Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0504 and Echvi_0505 are separated by 4 nucleotides Echvi_0505 and Echvi_0506 overlap by 10 nucleotides Echvi_0506 and Echvi_0507 are separated by 263 nucleotides
Echvi_0504: Echvi_0504 - Signal transduction histidine kinase, at 561,240 to 564,401
_0504
Echvi_0505: Echvi_0505 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 564,406 to 564,996
_0505
Echvi_0506: Echvi_0506 - Predicted neuraminidase (sialidase), at 564,987 to 566,087
_0506
Echvi_0507: Echvi_0507 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 566,351 to 567,364
_0507
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 564.014 kb on + strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.047 kb on - strand, within Echvi_0504 at 564.085 kb on - strand at 564.086 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.355 kb on + strand at 564.355 kb on + strand at 564.356 kb on - strand at 564.356 kb on - strand at 564.386 kb on + strand at 564.399 kb on + strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.425 kb on + strand at 564.426 kb on - strand at 564.434 kb on + strand at 564.435 kb on - strand at 564.473 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.580 kb on - strand, within Echvi_0505 at 564.592 kb on - strand, within Echvi_0505 at 564.727 kb on + strand, within Echvi_0505 at 564.825 kb on + strand, within Echvi_0505 at 564.899 kb on - strand, within Echvi_0505 at 564.957 kb on + strand at 564.957 kb on + strand at 564.958 kb on - strand at 564.974 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.003 kb on - strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.045 kb on + strand at 565.052 kb on + strand at 565.053 kb on - strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.218 kb on - strand, within Echvi_0506 at 565.218 kb on - strand, within Echvi_0506 at 565.219 kb on + strand, within Echvi_0506 at 565.220 kb on - strand, within Echvi_0506 at 565.227 kb on + strand, within Echvi_0506 at 565.279 kb on - strand, within Echvi_0506 at 565.310 kb on + strand, within Echvi_0506 at 565.311 kb on - strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.399 kb on - strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.421 kb on - strand, within Echvi_0506 at 565.421 kb on - strand, within Echvi_0506 at 565.576 kb on - strand, within Echvi_0506 at 565.576 kb on - strand, within Echvi_0506 at 565.639 kb on + strand, within Echvi_0506 at 565.639 kb on + strand, within Echvi_0506 at 565.639 kb on + strand, within Echvi_0506 at 565.640 kb on - strand, within Echvi_0506 at 565.640 kb on - strand, within Echvi_0506 at 565.676 kb on + strand, within Echvi_0506 at 565.736 kb on - strand, within Echvi_0506 at 565.752 kb on + strand, within Echvi_0506 at 565.887 kb on + strand, within Echvi_0506 at 565.888 kb on - strand, within Echvi_0506 at 565.895 kb on + strand, within Echvi_0506 at 565.896 kb on - strand, within Echvi_0506 at 565.957 kb on - strand, within Echvi_0506 at 566.016 kb on + strand at 566.053 kb on - strand at 566.088 kb on - strand at 566.107 kb on + strand at 566.107 kb on + strand at 566.108 kb on - strand at 566.108 kb on - strand at 566.108 kb on - strand at 566.138 kb on + strand at 566.163 kb on + strand at 566.291 kb on + strand at 566.292 kb on - strand at 566.292 kb on - strand at 566.344 kb on + strand at 566.344 kb on + strand at 566.345 kb on - strand at 566.350 kb on - strand at 566.353 kb on - strand at 566.374 kb on + strand at 566.375 kb on - strand at 566.450 kb on - strand at 566.450 kb on - strand at 566.450 kb on - strand at 566.451 kb on + strand at 566.451 kb on + strand at 566.451 kb on + strand at 566.452 kb on - strand at 566.452 kb on - strand at 566.452 kb on - strand at 566.569 kb on + strand, within Echvi_0507 at 566.570 kb on - strand, within Echvi_0507 at 566.598 kb on - strand, within Echvi_0507 at 566.607 kb on + strand, within Echvi_0507 at 566.607 kb on + strand, within Echvi_0507 at 566.607 kb on + strand, within Echvi_0507 at 566.608 kb on - strand, within Echvi_0507 at 566.746 kb on + strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 567.044 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 564,014 + Echvi_0504 0.88 +0.2 564,022 - Echvi_0504 0.88 +1.5 564,022 - Echvi_0504 0.88 +0.7 564,047 - Echvi_0504 0.89 +1.4 564,085 - +0.1 564,086 + +0.6 564,181 + +0.6 564,181 + +0.6 564,181 + +0.9 564,182 - +0.8 564,182 - +0.6 564,182 - -0.3 564,355 + +0.2 564,355 + +0.3 564,356 - -0.3 564,356 - -0.5 564,386 + -0.3 564,399 + +0.6 564,400 - -0.1 564,400 - +1.4 564,400 - -0.3 564,425 + -0.3 564,426 - +2.9 564,434 + +1.2 564,435 - +0.8 564,473 + Echvi_0505 0.11 -0.4 564,500 + Echvi_0505 0.16 +0.1 564,500 + Echvi_0505 0.16 +0.6 564,500 + Echvi_0505 0.16 -0.9 564,501 - Echvi_0505 0.16 -0.6 564,501 - Echvi_0505 0.16 +0.0 564,501 - Echvi_0505 0.16 +1.6 564,501 - Echvi_0505 0.16 -0.1 564,501 - Echvi_0505 0.16 +1.1 564,580 - Echvi_0505 0.29 +0.1 564,592 - Echvi_0505 0.31 -0.7 564,727 + Echvi_0505 0.54 +0.3 564,825 + Echvi_0505 0.71 +0.9 564,899 - Echvi_0505 0.83 +0.1 564,957 + +0.5 564,957 + -1.8 564,958 - -0.9 564,974 + +2.2 564,988 + +0.2 564,988 + +0.2 564,988 + +0.4 564,999 + +2.7 564,999 + +1.4 564,999 + +0.6 565,000 - -0.4 565,000 - -2.1 565,003 - -0.3 565,043 + -1.5 565,043 + -0.8 565,043 + -0.9 565,045 + +0.8 565,052 + -0.1 565,053 - -1.0 565,056 + -0.1 565,056 + -1.1 565,056 + +1.9 565,218 - Echvi_0506 0.21 +1.0 565,218 - Echvi_0506 0.21 -0.9 565,219 + Echvi_0506 0.21 -0.1 565,220 - Echvi_0506 0.21 -1.4 565,227 + Echvi_0506 0.22 -1.0 565,279 - Echvi_0506 0.27 -0.9 565,310 + Echvi_0506 0.29 -1.3 565,311 - Echvi_0506 0.29 -0.0 565,398 + Echvi_0506 0.37 -0.4 565,398 + Echvi_0506 0.37 -1.4 565,399 - Echvi_0506 0.37 +0.2 565,400 + Echvi_0506 0.38 -0.4 565,400 + Echvi_0506 0.38 +2.2 565,400 + Echvi_0506 0.38 -0.0 565,400 + Echvi_0506 0.38 -0.1 565,421 - Echvi_0506 0.39 -1.4 565,421 - Echvi_0506 0.39 +0.4 565,576 - Echvi_0506 0.53 +0.2 565,576 - Echvi_0506 0.53 +0.1 565,639 + Echvi_0506 0.59 -0.6 565,639 + Echvi_0506 0.59 +0.8 565,639 + Echvi_0506 0.59 +0.1 565,640 - Echvi_0506 0.59 -1.3 565,640 - Echvi_0506 0.59 -1.6 565,676 + Echvi_0506 0.63 -1.6 565,736 - Echvi_0506 0.68 -0.8 565,752 + Echvi_0506 0.69 -1.2 565,887 + Echvi_0506 0.82 +0.6 565,888 - Echvi_0506 0.82 -0.5 565,895 + Echvi_0506 0.82 -0.3 565,896 - Echvi_0506 0.83 -0.2 565,957 - Echvi_0506 0.88 +0.3 566,016 + -0.3 566,053 - -0.1 566,088 - -1.4 566,107 + -0.2 566,107 + +0.6 566,108 - +3.3 566,108 - +1.0 566,108 - -0.3 566,138 + +0.0 566,163 + -2.2 566,291 + +0.0 566,292 - -0.1 566,292 - +0.4 566,344 + -1.1 566,344 + +0.9 566,345 - -0.1 566,350 - +0.7 566,353 - -0.4 566,374 + +0.0 566,375 - -0.3 566,450 - +1.4 566,450 - -0.3 566,450 - -1.5 566,451 + -1.2 566,451 + +1.9 566,451 + -2.5 566,452 - -0.3 566,452 - -0.1 566,452 - -2.4 566,569 + Echvi_0507 0.21 -0.1 566,570 - Echvi_0507 0.22 +1.9 566,598 - Echvi_0507 0.24 -0.4 566,607 + Echvi_0507 0.25 -1.7 566,607 + Echvi_0507 0.25 +1.1 566,607 + Echvi_0507 0.25 -0.4 566,608 - Echvi_0507 0.25 -0.1 566,746 + Echvi_0507 0.39 -0.1 566,747 - Echvi_0507 0.39 +1.0 566,747 - Echvi_0507 0.39 +0.2 566,780 + Echvi_0507 0.42 +2.4 566,780 + Echvi_0507 0.42 -0.2 567,044 + Echvi_0507 0.68 -0.1 567,055 + Echvi_0507 0.69 +1.1 567,055 + Echvi_0507 0.69 +0.2
Or see this region's nucleotide sequence