Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0499

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0498 and Echvi_0499 are separated by 191 nucleotidesEchvi_0499 and Echvi_0500 are separated by 282 nucleotides Echvi_0498: Echvi_0498 - hypothetical protein, at 554,629 to 555,726 _0498 Echvi_0499: Echvi_0499 - Glycosyl hydrolases family 43., at 555,918 to 556,859 _0499 Echvi_0500: Echvi_0500 - Beta-xylosidase, at 557,142 to 558,122 _0500 Position (kb) 555 556 557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 554.930 kb on + strand, within Echvi_0498at 555.039 kb on + strand, within Echvi_0498at 555.075 kb on + strand, within Echvi_0498at 555.075 kb on + strand, within Echvi_0498at 555.119 kb on + strand, within Echvi_0498at 555.119 kb on + strand, within Echvi_0498at 555.122 kb on + strand, within Echvi_0498at 555.122 kb on + strand, within Echvi_0498at 555.123 kb on - strand, within Echvi_0498at 555.123 kb on - strand, within Echvi_0498at 555.123 kb on - strand, within Echvi_0498at 555.123 kb on - strand, within Echvi_0498at 555.156 kb on + strand, within Echvi_0498at 555.158 kb on + strand, within Echvi_0498at 555.161 kb on + strand, within Echvi_0498at 555.161 kb on + strand, within Echvi_0498at 555.162 kb on - strand, within Echvi_0498at 555.191 kb on + strand, within Echvi_0498at 555.220 kb on + strand, within Echvi_0498at 555.238 kb on - strand, within Echvi_0498at 555.280 kb on - strand, within Echvi_0498at 555.391 kb on + strand, within Echvi_0498at 555.391 kb on + strand, within Echvi_0498at 555.438 kb on + strand, within Echvi_0498at 555.439 kb on - strand, within Echvi_0498at 555.439 kb on - strand, within Echvi_0498at 555.629 kb on - strandat 555.652 kb on - strandat 555.652 kb on - strandat 555.721 kb on - strandat 555.721 kb on - strandat 555.721 kb on - strandat 555.794 kb on + strandat 555.850 kb on + strandat 555.850 kb on + strandat 555.850 kb on + strandat 555.850 kb on + strandat 555.851 kb on - strandat 555.866 kb on - strandat 555.880 kb on - strandat 555.880 kb on - strandat 555.883 kb on - strandat 555.887 kb on + strandat 555.888 kb on - strandat 555.914 kb on - strandat 555.917 kb on + strandat 556.045 kb on - strand, within Echvi_0499at 556.086 kb on - strand, within Echvi_0499at 556.139 kb on + strand, within Echvi_0499at 556.140 kb on - strand, within Echvi_0499at 556.209 kb on + strand, within Echvi_0499at 556.210 kb on - strand, within Echvi_0499at 556.312 kb on - strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.333 kb on - strand, within Echvi_0499at 556.334 kb on + strand, within Echvi_0499at 556.334 kb on + strand, within Echvi_0499at 556.335 kb on - strand, within Echvi_0499at 556.352 kb on + strand, within Echvi_0499at 556.352 kb on + strand, within Echvi_0499at 556.353 kb on - strand, within Echvi_0499at 556.355 kb on + strand, within Echvi_0499at 556.402 kb on - strand, within Echvi_0499at 556.409 kb on + strand, within Echvi_0499at 556.409 kb on + strand, within Echvi_0499at 556.409 kb on + strand, within Echvi_0499at 556.410 kb on - strand, within Echvi_0499at 556.410 kb on - strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.417 kb on - strand, within Echvi_0499at 556.417 kb on - strand, within Echvi_0499at 556.421 kb on + strand, within Echvi_0499at 556.422 kb on - strand, within Echvi_0499at 556.422 kb on - strand, within Echvi_0499at 556.521 kb on + strand, within Echvi_0499at 556.522 kb on - strand, within Echvi_0499at 556.522 kb on - strand, within Echvi_0499at 556.697 kb on + strand, within Echvi_0499at 556.701 kb on + strand, within Echvi_0499at 556.701 kb on + strand, within Echvi_0499at 556.701 kb on + strand, within Echvi_0499at 556.702 kb on - strand, within Echvi_0499at 556.839 kb on - strandat 556.862 kb on + strandat 556.862 kb on + strandat 556.863 kb on - strandat 556.920 kb on + strandat 556.921 kb on - strandat 557.016 kb on + strandat 557.017 kb on - strandat 557.017 kb on - strandat 557.180 kb on - strandat 557.265 kb on + strand, within Echvi_0500at 557.313 kb on + strand, within Echvi_0500at 557.313 kb on + strand, within Echvi_0500at 557.317 kb on + strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.340 kb on - strand, within Echvi_0500at 557.353 kb on - strand, within Echvi_0500at 557.473 kb on + strand, within Echvi_0500at 557.489 kb on + strand, within Echvi_0500at 557.489 kb on + strand, within Echvi_0500at 557.570 kb on - strand, within Echvi_0500at 557.570 kb on - strand, within Echvi_0500at 557.706 kb on - strand, within Echvi_0500at 557.706 kb on - strand, within Echvi_0500at 557.715 kb on + strand, within Echvi_0500at 557.715 kb on + strand, within Echvi_0500at 557.716 kb on - strand, within Echvi_0500at 557.716 kb on - strand, within Echvi_0500at 557.718 kb on + strand, within Echvi_0500at 557.719 kb on - strand, within Echvi_0500at 557.736 kb on - strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.767 kb on - strand, within Echvi_0500at 557.781 kb on - strand, within Echvi_0500at 557.824 kb on - strand, within Echvi_0500at 557.826 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.836 kb on - strand, within Echvi_0500at 557.836 kb on - strand, within Echvi_0500at 557.843 kb on + strand, within Echvi_0500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
554,930 + Echvi_0498 0.27 -0.1
555,039 + Echvi_0498 0.37 -0.8
555,075 + Echvi_0498 0.41 +0.4
555,075 + Echvi_0498 0.41 -0.4
555,119 + Echvi_0498 0.45 -0.8
555,119 + Echvi_0498 0.45 -2.6
555,122 + Echvi_0498 0.45 -0.4
555,122 + Echvi_0498 0.45 +3.3
555,123 - Echvi_0498 0.45 -0.8
555,123 - Echvi_0498 0.45 +0.1
555,123 - Echvi_0498 0.45 +0.8
555,123 - Echvi_0498 0.45 +0.2
555,156 + Echvi_0498 0.48 -1.8
555,158 + Echvi_0498 0.48 +1.3
555,161 + Echvi_0498 0.48 +0.3
555,161 + Echvi_0498 0.48 +1.3
555,162 - Echvi_0498 0.49 +1.9
555,191 + Echvi_0498 0.51 +0.5
555,220 + Echvi_0498 0.54 -0.3
555,238 - Echvi_0498 0.55 +0.6
555,280 - Echvi_0498 0.59 +0.6
555,391 + Echvi_0498 0.69 -1.0
555,391 + Echvi_0498 0.69 -0.2
555,438 + Echvi_0498 0.74 +1.3
555,439 - Echvi_0498 0.74 -1.0
555,439 - Echvi_0498 0.74 -2.0
555,629 - +0.2
555,652 - +0.2
555,652 - +1.3
555,721 - +0.3
555,721 - +0.9
555,721 - +0.2
555,794 + -0.8
555,850 + -0.1
555,850 + -1.2
555,850 + +0.0
555,850 + +2.2
555,851 - +0.0
555,866 - -0.9
555,880 - -0.5
555,880 - -0.9
555,883 - -1.0
555,887 + +0.1
555,888 - -1.0
555,914 - +1.1
555,917 + -0.8
556,045 - Echvi_0499 0.13 -0.1
556,086 - Echvi_0499 0.18 +0.3
556,139 + Echvi_0499 0.23 -1.9
556,140 - Echvi_0499 0.24 -0.9
556,209 + Echvi_0499 0.31 +1.2
556,210 - Echvi_0499 0.31 -1.1
556,312 - Echvi_0499 0.42 -1.8
556,332 + Echvi_0499 0.44 -1.4
556,332 + Echvi_0499 0.44 +1.3
556,332 + Echvi_0499 0.44 -0.9
556,332 + Echvi_0499 0.44 +0.3
556,332 + Echvi_0499 0.44 -0.7
556,332 + Echvi_0499 0.44 -0.9
556,332 + Echvi_0499 0.44 -0.2
556,333 - Echvi_0499 0.44 -1.5
556,334 + Echvi_0499 0.44 -1.2
556,334 + Echvi_0499 0.44 -0.2
556,335 - Echvi_0499 0.44 +0.8
556,352 + Echvi_0499 0.46 -1.8
556,352 + Echvi_0499 0.46 +0.1
556,353 - Echvi_0499 0.46 -0.3
556,355 + Echvi_0499 0.46 -0.2
556,402 - Echvi_0499 0.51 -0.1
556,409 + Echvi_0499 0.52 +0.6
556,409 + Echvi_0499 0.52 +0.5
556,409 + Echvi_0499 0.52 -0.8
556,410 - Echvi_0499 0.52 +0.6
556,410 - Echvi_0499 0.52 -0.3
556,416 + Echvi_0499 0.53 +0.9
556,416 + Echvi_0499 0.53 -0.7
556,416 + Echvi_0499 0.53 +0.2
556,416 + Echvi_0499 0.53 -2.2
556,417 - Echvi_0499 0.53 -0.7
556,417 - Echvi_0499 0.53 -0.5
556,421 + Echvi_0499 0.53 -0.7
556,422 - Echvi_0499 0.54 -0.4
556,422 - Echvi_0499 0.54 -0.2
556,521 + Echvi_0499 0.64 -0.6
556,522 - Echvi_0499 0.64 -0.2
556,522 - Echvi_0499 0.64 +0.6
556,697 + Echvi_0499 0.83 +0.2
556,701 + Echvi_0499 0.83 -0.9
556,701 + Echvi_0499 0.83 -0.6
556,701 + Echvi_0499 0.83 -0.4
556,702 - Echvi_0499 0.83 -1.4
556,839 - -0.8
556,862 + +1.3
556,862 + +0.2
556,863 - -0.4
556,920 + -0.3
556,921 - -2.3
557,016 + -0.4
557,017 - +0.3
557,017 - -0.1
557,180 - -0.3
557,265 + Echvi_0500 0.13 -0.0
557,313 + Echvi_0500 0.17 -0.6
557,313 + Echvi_0500 0.17 -2.4
557,317 + Echvi_0500 0.18 +1.4
557,318 - Echvi_0500 0.18 +0.1
557,318 - Echvi_0500 0.18 -1.3
557,318 - Echvi_0500 0.18 -1.1
557,318 - Echvi_0500 0.18 +0.8
557,318 - Echvi_0500 0.18 +1.6
557,318 - Echvi_0500 0.18 -0.5
557,318 - Echvi_0500 0.18 +1.2
557,340 - Echvi_0500 0.20 -0.5
557,353 - Echvi_0500 0.22 +0.3
557,473 + Echvi_0500 0.34 -0.3
557,489 + Echvi_0500 0.35 -0.1
557,489 + Echvi_0500 0.35 +0.9
557,570 - Echvi_0500 0.44 -1.1
557,570 - Echvi_0500 0.44 +0.1
557,706 - Echvi_0500 0.57 -0.7
557,706 - Echvi_0500 0.57 -2.0
557,715 + Echvi_0500 0.58 -1.5
557,715 + Echvi_0500 0.58 -1.1
557,716 - Echvi_0500 0.59 -1.1
557,716 - Echvi_0500 0.59 +0.2
557,718 + Echvi_0500 0.59 +0.9
557,719 - Echvi_0500 0.59 +0.7
557,736 - Echvi_0500 0.61 -1.1
557,738 + Echvi_0500 0.61 +0.6
557,738 + Echvi_0500 0.61 -0.7
557,738 + Echvi_0500 0.61 -1.7
557,738 + Echvi_0500 0.61 -0.7
557,739 - Echvi_0500 0.61 -1.1
557,739 - Echvi_0500 0.61 +0.2
557,739 - Echvi_0500 0.61 -0.3
557,767 - Echvi_0500 0.64 +1.2
557,781 - Echvi_0500 0.65 -0.4
557,824 - Echvi_0500 0.70 -0.2
557,826 + Echvi_0500 0.70 +0.1
557,835 + Echvi_0500 0.71 -0.3
557,835 + Echvi_0500 0.71 +0.1
557,835 + Echvi_0500 0.71 -1.1
557,836 - Echvi_0500 0.71 -0.7
557,836 - Echvi_0500 0.71 -2.2
557,843 + Echvi_0500 0.71 +0.2

Or see this region's nucleotide sequence