Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0479

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0478 and Echvi_0479 are separated by 309 nucleotidesEchvi_0479 and Echvi_0480 are separated by 76 nucleotides Echvi_0478: Echvi_0478 - 6-phosphogluconate dehydrogenase, decarboxylating, at 524,955 to 526,865 _0478 Echvi_0479: Echvi_0479 - Predicted dehydrogenases and related proteins, at 527,175 to 528,251 _0479 Echvi_0480: Echvi_0480 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 528,328 to 529,257 _0480 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 526.213 kb on - strand, within Echvi_0478at 526.267 kb on - strand, within Echvi_0478at 526.267 kb on - strand, within Echvi_0478at 526.296 kb on + strand, within Echvi_0478at 526.302 kb on + strand, within Echvi_0478at 526.374 kb on + strand, within Echvi_0478at 526.403 kb on + strand, within Echvi_0478at 526.413 kb on + strand, within Echvi_0478at 526.413 kb on + strand, within Echvi_0478at 526.414 kb on - strand, within Echvi_0478at 526.419 kb on - strand, within Echvi_0478at 526.443 kb on + strand, within Echvi_0478at 526.443 kb on + strand, within Echvi_0478at 526.491 kb on + strand, within Echvi_0478at 526.508 kb on + strand, within Echvi_0478at 526.508 kb on + strand, within Echvi_0478at 526.509 kb on - strand, within Echvi_0478at 526.509 kb on - strand, within Echvi_0478at 526.510 kb on + strand, within Echvi_0478at 526.510 kb on + strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.532 kb on + strand, within Echvi_0478at 526.532 kb on + strand, within Echvi_0478at 526.854 kb on + strandat 526.914 kb on + strandat 526.914 kb on + strandat 526.914 kb on + strandat 526.954 kb on + strandat 526.997 kb on + strandat 527.055 kb on - strandat 527.055 kb on - strandat 527.055 kb on - strandat 527.072 kb on - strandat 527.140 kb on + strandat 527.141 kb on - strandat 527.217 kb on - strandat 527.217 kb on - strandat 527.348 kb on + strand, within Echvi_0479at 527.348 kb on + strand, within Echvi_0479at 527.349 kb on - strand, within Echvi_0479at 527.349 kb on - strand, within Echvi_0479at 527.393 kb on + strand, within Echvi_0479at 527.393 kb on + strand, within Echvi_0479at 527.394 kb on - strand, within Echvi_0479at 527.394 kb on - strand, within Echvi_0479at 527.419 kb on - strand, within Echvi_0479at 527.477 kb on + strand, within Echvi_0479at 527.478 kb on - strand, within Echvi_0479at 527.482 kb on + strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.547 kb on - strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.716 kb on - strand, within Echvi_0479at 527.793 kb on - strand, within Echvi_0479at 527.808 kb on + strand, within Echvi_0479at 527.809 kb on - strand, within Echvi_0479at 527.809 kb on - strand, within Echvi_0479at 527.810 kb on + strand, within Echvi_0479at 527.810 kb on + strand, within Echvi_0479at 527.815 kb on - strand, within Echvi_0479at 527.880 kb on - strand, within Echvi_0479at 528.051 kb on - strand, within Echvi_0479at 528.321 kb on + strandat 528.322 kb on - strandat 528.358 kb on + strandat 528.511 kb on - strand, within Echvi_0480at 528.598 kb on + strand, within Echvi_0480at 528.599 kb on - strand, within Echvi_0480at 528.599 kb on - strand, within Echvi_0480at 528.604 kb on + strand, within Echvi_0480at 528.604 kb on + strand, within Echvi_0480at 528.632 kb on + strand, within Echvi_0480at 528.637 kb on + strand, within Echvi_0480at 528.822 kb on + strand, within Echvi_0480at 528.822 kb on + strand, within Echvi_0480at 528.888 kb on - strand, within Echvi_0480at 528.888 kb on - strand, within Echvi_0480at 528.988 kb on - strand, within Echvi_0480at 528.989 kb on + strand, within Echvi_0480at 528.989 kb on + strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 529.134 kb on - strand, within Echvi_0480at 529.138 kb on - strand, within Echvi_0480at 529.138 kb on - strand, within Echvi_0480at 529.226 kb on + strandat 529.227 kb on - strandat 529.239 kb on + strandat 529.240 kb on - strandat 529.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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526,213 - Echvi_0478 0.66 -1.8
526,267 - Echvi_0478 0.69 -2.3
526,267 - Echvi_0478 0.69 -1.2
526,296 + Echvi_0478 0.70 +1.2
526,302 + Echvi_0478 0.70 +0.6
526,374 + Echvi_0478 0.74 -1.6
526,403 + Echvi_0478 0.76 +0.6
526,413 + Echvi_0478 0.76 -0.4
526,413 + Echvi_0478 0.76 +0.5
526,414 - Echvi_0478 0.76 +1.3
526,419 - Echvi_0478 0.77 -0.7
526,443 + Echvi_0478 0.78 +0.1
526,443 + Echvi_0478 0.78 +0.4
526,491 + Echvi_0478 0.80 +4.5
526,508 + Echvi_0478 0.81 -0.1
526,508 + Echvi_0478 0.81 -3.2
526,509 - Echvi_0478 0.81 +0.4
526,509 - Echvi_0478 0.81 +1.9
526,510 + Echvi_0478 0.81 -1.2
526,510 + Echvi_0478 0.81 +0.2
526,511 - Echvi_0478 0.81 +0.9
526,511 - Echvi_0478 0.81 -0.6
526,511 - Echvi_0478 0.81 -0.6
526,511 - Echvi_0478 0.81 -1.8
526,511 - Echvi_0478 0.81 +0.5
526,511 - Echvi_0478 0.81 -0.2
526,511 - Echvi_0478 0.81 -0.8
526,511 - Echvi_0478 0.81 -1.0
526,532 + Echvi_0478 0.83 +1.6
526,532 + Echvi_0478 0.83 -0.3
526,854 + +1.3
526,914 + +0.1
526,914 + -0.1
526,914 + +0.2
526,954 + +2.9
526,997 + -0.4
527,055 - -0.3
527,055 - +0.7
527,055 - +1.5
527,072 - -2.4
527,140 + -0.1
527,141 - +0.2
527,217 - -0.9
527,217 - -1.3
527,348 + Echvi_0479 0.16 +0.9
527,348 + Echvi_0479 0.16 +1.7
527,349 - Echvi_0479 0.16 -0.5
527,349 - Echvi_0479 0.16 +0.4
527,393 + Echvi_0479 0.20 +1.0
527,393 + Echvi_0479 0.20 -2.9
527,394 - Echvi_0479 0.20 -0.3
527,394 - Echvi_0479 0.20 -0.7
527,419 - Echvi_0479 0.23 -1.7
527,477 + Echvi_0479 0.28 -0.5
527,478 - Echvi_0479 0.28 -1.8
527,482 + Echvi_0479 0.29 -0.7
527,545 - Echvi_0479 0.34 -1.6
527,545 - Echvi_0479 0.34 -1.4
527,545 - Echvi_0479 0.34 -1.3
527,547 - Echvi_0479 0.35 -0.2
527,715 + Echvi_0479 0.50 -0.9
527,715 + Echvi_0479 0.50 -0.4
527,715 + Echvi_0479 0.50 +1.5
527,716 - Echvi_0479 0.50 +0.2
527,793 - Echvi_0479 0.57 -0.6
527,808 + Echvi_0479 0.59 -1.5
527,809 - Echvi_0479 0.59 -0.5
527,809 - Echvi_0479 0.59 +0.1
527,810 + Echvi_0479 0.59 -1.1
527,810 + Echvi_0479 0.59 -1.3
527,815 - Echvi_0479 0.59 -1.0
527,880 - Echvi_0479 0.65 -0.4
528,051 - Echvi_0479 0.81 -1.2
528,321 + +0.9
528,322 - -2.0
528,358 + -0.9
528,511 - Echvi_0480 0.20 +1.6
528,598 + Echvi_0480 0.29 -0.4
528,599 - Echvi_0480 0.29 -0.9
528,599 - Echvi_0480 0.29 -0.4
528,604 + Echvi_0480 0.30 -0.1
528,604 + Echvi_0480 0.30 +0.2
528,632 + Echvi_0480 0.33 +0.8
528,637 + Echvi_0480 0.33 +1.0
528,822 + Echvi_0480 0.53 +1.1
528,822 + Echvi_0480 0.53 +0.2
528,888 - Echvi_0480 0.60 -0.5
528,888 - Echvi_0480 0.60 -1.0
528,988 - Echvi_0480 0.71 -0.9
528,989 + Echvi_0480 0.71 +0.8
528,989 + Echvi_0480 0.71 -0.8
528,990 - Echvi_0480 0.71 -1.4
528,990 - Echvi_0480 0.71 -0.6
528,990 - Echvi_0480 0.71 -0.3
529,134 - Echvi_0480 0.87 +0.2
529,138 - Echvi_0480 0.87 -0.3
529,138 - Echvi_0480 0.87 -0.1
529,226 + +1.4
529,227 - -0.4
529,239 + +0.3
529,240 - -0.6
529,240 - +1.5

Or see this region's nucleotide sequence