Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0470 and Echvi_0471 overlap by 4 nucleotides Echvi_0471 and Echvi_0472 are separated by 331 nucleotides Echvi_0472 and Echvi_0473 are separated by 34 nucleotides
Echvi_0470: Echvi_0470 - beta-ketoacyl-acyl-carrier-protein synthase II, at 518,337 to 519,581
_0470
Echvi_0471: Echvi_0471 - Bacterial regulatory proteins, tetR family., at 519,578 to 520,138
_0471
Echvi_0472: Echvi_0472 - hypothetical protein, at 520,470 to 520,688
_0472
Echvi_0473: Echvi_0473 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,723 to 521,754
_0473
Position (kb) 520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 519.504 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.570 kb on + strand at 519.581 kb on + strand at 519.582 kb on - strand at 519.589 kb on + strand at 519.596 kb on + strand at 519.608 kb on - strand at 519.725 kb on - strand, within Echvi_0471 at 519.887 kb on - strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.903 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 520.017 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.124 kb on - strand at 520.124 kb on - strand at 520.132 kb on + strand at 520.132 kb on + strand at 520.133 kb on - strand at 520.133 kb on - strand at 520.143 kb on + strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.186 kb on + strand at 520.187 kb on - strand at 520.190 kb on + strand at 520.191 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.243 kb on + strand at 520.340 kb on + strand at 520.340 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.446 kb on - strand at 520.446 kb on - strand at 520.480 kb on + strand at 520.488 kb on + strand at 520.497 kb on + strand, within Echvi_0472 at 520.499 kb on + strand, within Echvi_0472 at 520.616 kb on - strand, within Echvi_0472 at 520.677 kb on - strand at 520.730 kb on - strand at 520.730 kb on - strand at 520.735 kb on + strand at 520.770 kb on - strand at 520.770 kb on - strand at 520.833 kb on - strand, within Echvi_0473 at 520.962 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.031 kb on - strand, within Echvi_0473 at 521.111 kb on - strand, within Echvi_0473 at 521.123 kb on + strand, within Echvi_0473 at 521.124 kb on - strand, within Echvi_0473 at 521.141 kb on + strand, within Echvi_0473 at 521.174 kb on + strand, within Echvi_0473 at 521.175 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.196 kb on + strand, within Echvi_0473 at 521.197 kb on - strand, within Echvi_0473 at 521.254 kb on + strand, within Echvi_0473 at 521.254 kb on + strand, within Echvi_0473 at 521.256 kb on + strand, within Echvi_0473 at 521.257 kb on - strand, within Echvi_0473 at 521.288 kb on - strand, within Echvi_0473 at 521.294 kb on - strand, within Echvi_0473 at 521.361 kb on - strand, within Echvi_0473 at 521.483 kb on - strand, within Echvi_0473 at 521.489 kb on + strand, within Echvi_0473 at 521.490 kb on - strand, within Echvi_0473 at 521.490 kb on - strand, within Echvi_0473 at 521.625 kb on + strand, within Echvi_0473
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 519,504 + -0.1 519,525 + +0.1 519,525 + +0.4 519,525 + -0.8 519,525 + +0.2 519,570 + +0.5 519,581 + -0.6 519,582 - -2.8 519,589 + -0.6 519,596 + -0.5 519,608 - -2.1 519,725 - Echvi_0471 0.26 +0.2 519,887 - Echvi_0471 0.55 -2.4 519,888 + Echvi_0471 0.55 +0.9 519,888 + Echvi_0471 0.55 -0.6 519,888 + Echvi_0471 0.55 -0.1 519,889 - Echvi_0471 0.55 -0.9 519,889 - Echvi_0471 0.55 -1.1 519,889 - Echvi_0471 0.55 -2.1 519,889 - Echvi_0471 0.55 +0.5 519,903 - Echvi_0471 0.58 +0.9 519,909 - Echvi_0471 0.59 -2.1 519,909 - Echvi_0471 0.59 -1.5 520,017 + Echvi_0471 0.78 -0.2 520,022 + Echvi_0471 0.79 -2.2 520,022 + Echvi_0471 0.79 -0.7 520,022 + Echvi_0471 0.79 +0.7 520,023 - Echvi_0471 0.79 +0.5 520,023 - Echvi_0471 0.79 -0.7 520,078 + Echvi_0471 0.89 +0.2 520,078 + Echvi_0471 0.89 -1.1 520,124 - -0.9 520,124 - -3.7 520,132 + +2.5 520,132 + -1.2 520,133 - +0.8 520,133 - -0.6 520,143 + -0.2 520,144 - +0.6 520,144 - +0.4 520,144 - +0.0 520,186 + -0.4 520,187 - -0.4 520,190 + -0.1 520,191 - -2.9 520,193 - +0.2 520,193 - -0.5 520,193 - -1.3 520,243 + +0.9 520,340 + -0.5 520,340 + -0.6 520,445 + +0.4 520,445 + -1.1 520,445 + -0.4 520,446 - -1.4 520,446 - -0.7 520,480 + -1.8 520,488 + +1.3 520,497 + Echvi_0472 0.12 -0.5 520,499 + Echvi_0472 0.13 -1.4 520,616 - Echvi_0472 0.67 -1.0 520,677 - -1.5 520,730 - +0.1 520,730 - +0.2 520,735 + -1.5 520,770 - -1.1 520,770 - +3.5 520,833 - Echvi_0473 0.11 -2.2 520,962 + Echvi_0473 0.23 +0.2 521,030 + Echvi_0473 0.30 +0.3 521,030 + Echvi_0473 0.30 -1.1 521,030 + Echvi_0473 0.30 +0.3 521,031 - Echvi_0473 0.30 -0.4 521,111 - Echvi_0473 0.38 +1.7 521,123 + Echvi_0473 0.39 -0.8 521,124 - Echvi_0473 0.39 -0.2 521,141 + Echvi_0473 0.41 -0.9 521,174 + Echvi_0473 0.44 +0.6 521,175 - Echvi_0473 0.44 +0.1 521,195 - Echvi_0473 0.46 -0.7 521,195 - Echvi_0473 0.46 -0.1 521,195 - Echvi_0473 0.46 +0.6 521,195 - Echvi_0473 0.46 +1.2 521,196 + Echvi_0473 0.46 +0.7 521,197 - Echvi_0473 0.46 +0.6 521,254 + Echvi_0473 0.51 +0.1 521,254 + Echvi_0473 0.51 +0.5 521,256 + Echvi_0473 0.52 -0.1 521,257 - Echvi_0473 0.52 -1.6 521,288 - Echvi_0473 0.55 -2.3 521,294 - Echvi_0473 0.55 -0.3 521,361 - Echvi_0473 0.62 +0.5 521,483 - Echvi_0473 0.74 +0.0 521,489 + Echvi_0473 0.74 -0.5 521,490 - Echvi_0473 0.74 -0.8 521,490 - Echvi_0473 0.74 -1.7 521,625 + Echvi_0473 0.87 -0.7
Or see this region's nucleotide sequence