Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0428

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0425 and Echvi_0426 are separated by 13 nucleotidesEchvi_0426 and Echvi_0427 are separated by 16 nucleotidesEchvi_0427 and Echvi_0428 are separated by 81 nucleotidesEchvi_0428 and Echvi_0429 are separated by 163 nucleotidesEchvi_0429 and Echvi_0430 are separated by 33 nucleotides Echvi_0425: Echvi_0425 - hypothetical protein, at 470,787 to 471,176 _0425 Echvi_0426: Echvi_0426 - hypothetical protein, at 471,190 to 471,501 _0426 Echvi_0427: Echvi_0427 - hypothetical protein, at 471,518 to 471,616 _0427 Echvi_0428: Echvi_0428 - Helix-turn-helix., at 471,698 to 471,904 _0428 Echvi_0429: Echvi_0429 - hypothetical protein, at 472,068 to 472,493 _0429 Echvi_0430: Echvi_0430 - hypothetical protein, at 472,527 to 473,333 _0430 Position (kb) 471 472Strain fitness (log2 ratio) -2 -1 0 1 2at 470.763 kb on - strandat 470.779 kb on + strandat 470.806 kb on + strandat 470.830 kb on + strand, within Echvi_0425at 470.830 kb on + strand, within Echvi_0425at 470.831 kb on - strand, within Echvi_0425at 470.839 kb on + strand, within Echvi_0425at 470.852 kb on + strand, within Echvi_0425at 470.886 kb on + strand, within Echvi_0425at 470.887 kb on - strand, within Echvi_0425at 470.887 kb on - strand, within Echvi_0425at 470.887 kb on - strand, within Echvi_0425at 470.919 kb on - strand, within Echvi_0425at 470.944 kb on + strand, within Echvi_0425at 470.945 kb on - strand, within Echvi_0425at 470.959 kb on + strand, within Echvi_0425at 470.965 kb on + strand, within Echvi_0425at 470.966 kb on - strand, within Echvi_0425at 471.022 kb on - strand, within Echvi_0425at 471.024 kb on - strand, within Echvi_0425at 471.036 kb on + strand, within Echvi_0425at 471.037 kb on - strand, within Echvi_0425at 471.071 kb on - strand, within Echvi_0425at 471.074 kb on - strand, within Echvi_0425at 471.074 kb on - strand, within Echvi_0425at 471.081 kb on - strand, within Echvi_0425at 471.092 kb on + strand, within Echvi_0425at 471.092 kb on + strand, within Echvi_0425at 471.093 kb on - strand, within Echvi_0425at 471.093 kb on - strand, within Echvi_0425at 471.129 kb on - strand, within Echvi_0425at 471.129 kb on - strand, within Echvi_0425at 471.249 kb on + strand, within Echvi_0426at 471.249 kb on + strand, within Echvi_0426at 471.250 kb on - strand, within Echvi_0426at 471.250 kb on - strand, within Echvi_0426at 471.276 kb on + strand, within Echvi_0426at 471.277 kb on - strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.302 kb on + strand, within Echvi_0426at 471.302 kb on + strand, within Echvi_0426at 471.303 kb on - strand, within Echvi_0426at 471.309 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.315 kb on + strand, within Echvi_0426at 471.346 kb on + strand, within Echvi_0426at 471.430 kb on + strand, within Echvi_0426at 471.449 kb on - strand, within Echvi_0426at 471.449 kb on - strand, within Echvi_0426at 471.449 kb on - strand, within Echvi_0426at 471.470 kb on - strandat 471.474 kb on + strandat 471.474 kb on + strandat 471.474 kb on + strandat 471.475 kb on - strandat 471.492 kb on + strandat 471.501 kb on + strandat 471.502 kb on - strandat 471.510 kb on - strandat 471.513 kb on + strandat 471.548 kb on + strand, within Echvi_0427at 471.705 kb on + strandat 471.705 kb on + strandat 471.714 kb on + strandat 471.759 kb on + strand, within Echvi_0428at 471.759 kb on + strand, within Echvi_0428at 471.760 kb on - strand, within Echvi_0428at 471.767 kb on - strand, within Echvi_0428at 471.768 kb on + strand, within Echvi_0428at 471.788 kb on + strand, within Echvi_0428at 471.788 kb on + strand, within Echvi_0428at 471.789 kb on - strand, within Echvi_0428at 471.789 kb on - strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.845 kb on - strand, within Echvi_0428at 471.845 kb on - strand, within Echvi_0428at 471.845 kb on - strand, within Echvi_0428at 471.847 kb on + strand, within Echvi_0428at 471.847 kb on + strand, within Echvi_0428at 471.848 kb on - strand, within Echvi_0428at 471.848 kb on - strand, within Echvi_0428at 471.904 kb on + strandat 471.904 kb on + strandat 471.904 kb on + strandat 471.904 kb on + strandat 471.904 kb on + strandat 471.905 kb on - strandat 471.905 kb on - strandat 471.905 kb on - strandat 471.905 kb on - strandat 471.908 kb on + strandat 471.909 kb on - strandat 471.909 kb on - strandat 471.909 kb on - strandat 471.934 kb on + strandat 471.970 kb on + strandat 471.987 kb on - strandat 472.067 kb on + strandat 472.067 kb on + strandat 472.091 kb on + strandat 472.325 kb on + strand, within Echvi_0429at 472.325 kb on + strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.429 kb on - strand, within Echvi_0429at 472.513 kb on - strandat 472.525 kb on + strandat 472.630 kb on + strand, within Echvi_0430at 472.630 kb on + strand, within Echvi_0430at 472.679 kb on - strand, within Echvi_0430at 472.696 kb on + strand, within Echvi_0430at 472.697 kb on - strand, within Echvi_0430at 472.703 kb on + strand, within Echvi_0430at 472.704 kb on - strand, within Echvi_0430at 472.706 kb on - strand, within Echvi_0430at 472.733 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.741 kb on - strand, within Echvi_0430at 472.741 kb on - strand, within Echvi_0430at 472.742 kb on + strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.767 kb on - strand, within Echvi_0430at 472.787 kb on - strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.826 kb on - strand, within Echvi_0430at 472.838 kb on + strand, within Echvi_0430at 472.870 kb on + strand, within Echvi_0430at 472.870 kb on + strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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470,763 - +1.0
470,779 + -0.6
470,806 + +0.5
470,830 + Echvi_0425 0.11 +0.2
470,830 + Echvi_0425 0.11 +1.0
470,831 - Echvi_0425 0.11 +0.7
470,839 + Echvi_0425 0.13 +1.1
470,852 + Echvi_0425 0.17 +0.6
470,886 + Echvi_0425 0.25 +0.5
470,887 - Echvi_0425 0.26 +0.3
470,887 - Echvi_0425 0.26 -0.7
470,887 - Echvi_0425 0.26 -0.5
470,919 - Echvi_0425 0.34 -0.4
470,944 + Echvi_0425 0.40 -1.2
470,945 - Echvi_0425 0.41 +0.2
470,959 + Echvi_0425 0.44 +0.2
470,965 + Echvi_0425 0.46 +0.5
470,966 - Echvi_0425 0.46 -0.3
471,022 - Echvi_0425 0.60 -0.6
471,024 - Echvi_0425 0.61 +1.0
471,036 + Echvi_0425 0.64 -0.9
471,037 - Echvi_0425 0.64 -0.0
471,071 - Echvi_0425 0.73 -0.5
471,074 - Echvi_0425 0.74 -1.0
471,074 - Echvi_0425 0.74 +1.0
471,081 - Echvi_0425 0.75 +0.1
471,092 + Echvi_0425 0.78 +1.0
471,092 + Echvi_0425 0.78 +0.9
471,093 - Echvi_0425 0.78 -0.2
471,093 - Echvi_0425 0.78 -0.4
471,129 - Echvi_0425 0.88 +0.3
471,129 - Echvi_0425 0.88 -1.7
471,249 + Echvi_0426 0.19 -0.4
471,249 + Echvi_0426 0.19 +1.5
471,250 - Echvi_0426 0.19 +0.6
471,250 - Echvi_0426 0.19 +0.3
471,276 + Echvi_0426 0.28 -2.3
471,277 - Echvi_0426 0.28 -0.7
471,294 + Echvi_0426 0.33 -0.9
471,294 + Echvi_0426 0.33 -1.1
471,294 + Echvi_0426 0.33 -0.9
471,294 + Echvi_0426 0.33 +0.8
471,294 + Echvi_0426 0.33 -0.6
471,294 + Echvi_0426 0.33 -0.1
471,295 - Echvi_0426 0.34 -0.6
471,295 - Echvi_0426 0.34 -0.0
471,295 - Echvi_0426 0.34 -0.2
471,295 - Echvi_0426 0.34 +0.5
471,302 + Echvi_0426 0.36 -0.6
471,302 + Echvi_0426 0.36 +0.3
471,303 - Echvi_0426 0.36 -0.1
471,309 + Echvi_0426 0.38 +1.4
471,311 + Echvi_0426 0.39 +0.5
471,311 + Echvi_0426 0.39 +0.6
471,311 + Echvi_0426 0.39 -1.4
471,311 + Echvi_0426 0.39 -1.6
471,311 + Echvi_0426 0.39 +1.0
471,311 + Echvi_0426 0.39 +0.6
471,311 + Echvi_0426 0.39 -0.4
471,312 - Echvi_0426 0.39 -0.6
471,312 - Echvi_0426 0.39 +0.3
471,312 - Echvi_0426 0.39 +0.3
471,312 - Echvi_0426 0.39 +1.0
471,315 + Echvi_0426 0.40 +0.7
471,346 + Echvi_0426 0.50 +0.2
471,430 + Echvi_0426 0.77 +1.5
471,449 - Echvi_0426 0.83 -2.5
471,449 - Echvi_0426 0.83 +0.1
471,449 - Echvi_0426 0.83 +0.2
471,470 - -1.0
471,474 + +1.1
471,474 + +0.7
471,474 + -0.1
471,475 - +0.5
471,492 + +0.4
471,501 + -0.0
471,502 - -1.2
471,510 - +1.0
471,513 + +0.4
471,548 + Echvi_0427 0.30 +0.5
471,705 + -2.3
471,705 + -0.0
471,714 + +0.8
471,759 + Echvi_0428 0.29 +0.7
471,759 + Echvi_0428 0.29 +2.5
471,760 - Echvi_0428 0.30 -2.6
471,767 - Echvi_0428 0.33 -0.6
471,768 + Echvi_0428 0.34 +1.4
471,788 + Echvi_0428 0.43 +1.1
471,788 + Echvi_0428 0.43 +0.5
471,789 - Echvi_0428 0.44 +0.6
471,789 - Echvi_0428 0.44 +0.5
471,844 + Echvi_0428 0.71 -0.4
471,844 + Echvi_0428 0.71 +0.5
471,844 + Echvi_0428 0.71 +0.6
471,844 + Echvi_0428 0.71 +0.5
471,845 - Echvi_0428 0.71 -0.7
471,845 - Echvi_0428 0.71 -1.2
471,845 - Echvi_0428 0.71 +1.0
471,847 + Echvi_0428 0.72 +0.0
471,847 + Echvi_0428 0.72 +0.3
471,848 - Echvi_0428 0.72 -0.9
471,848 - Echvi_0428 0.72 +2.0
471,904 + +1.0
471,904 + +0.7
471,904 + +0.4
471,904 + -0.7
471,904 + +0.4
471,905 - +0.7
471,905 - -0.5
471,905 - -1.0
471,905 - +1.8
471,908 + +0.3
471,909 - +1.7
471,909 - -1.3
471,909 - +2.2
471,934 + +0.1
471,970 + +0.0
471,987 - +1.0
472,067 + -1.4
472,067 + +1.6
472,091 + -0.1
472,325 + Echvi_0429 0.60 +0.2
472,325 + Echvi_0429 0.60 -0.1
472,326 - Echvi_0429 0.61 +0.7
472,326 - Echvi_0429 0.61 +2.0
472,326 - Echvi_0429 0.61 +0.1
472,326 - Echvi_0429 0.61 -0.2
472,429 - Echvi_0429 0.85 -0.2
472,513 - -0.2
472,525 + -0.0
472,630 + Echvi_0430 0.13 -0.0
472,630 + Echvi_0430 0.13 -1.0
472,679 - Echvi_0430 0.19 -1.6
472,696 + Echvi_0430 0.21 -1.0
472,697 - Echvi_0430 0.21 -1.0
472,703 + Echvi_0430 0.22 -0.6
472,704 - Echvi_0430 0.22 +1.5
472,706 - Echvi_0430 0.22 +0.0
472,733 + Echvi_0430 0.26 +0.6
472,740 + Echvi_0430 0.26 +0.4
472,740 + Echvi_0430 0.26 +0.1
472,740 + Echvi_0430 0.26 -0.5
472,740 + Echvi_0430 0.26 +1.0
472,741 - Echvi_0430 0.27 -0.1
472,741 - Echvi_0430 0.27 -0.2
472,742 + Echvi_0430 0.27 -0.2
472,743 - Echvi_0430 0.27 +1.1
472,743 - Echvi_0430 0.27 -0.1
472,743 - Echvi_0430 0.27 +1.4
472,743 - Echvi_0430 0.27 +0.8
472,767 - Echvi_0430 0.30 +0.4
472,787 - Echvi_0430 0.32 -0.0
472,798 + Echvi_0430 0.34 -0.1
472,798 + Echvi_0430 0.34 -1.2
472,798 + Echvi_0430 0.34 +0.3
472,799 - Echvi_0430 0.34 +1.6
472,799 - Echvi_0430 0.34 -2.3
472,799 - Echvi_0430 0.34 +0.8
472,799 - Echvi_0430 0.34 +0.0
472,826 - Echvi_0430 0.37 +1.6
472,838 + Echvi_0430 0.39 -2.0
472,870 + Echvi_0430 0.43 +2.0
472,870 + Echvi_0430 0.43 +1.2
472,871 - Echvi_0430 0.43 -0.0
472,871 - Echvi_0430 0.43 -0.5
472,871 - Echvi_0430 0.43 +0.4
472,871 - Echvi_0430 0.43 -1.9
472,871 - Echvi_0430 0.43 +1.6

Or see this region's nucleotide sequence