Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0417

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0416 and Echvi_0417 are separated by 162 nucleotidesEchvi_0417 and Echvi_0418 are separated by 234 nucleotides Echvi_0416: Echvi_0416 - Transposase and inactivated derivatives, at 456,513 to 457,412 _0416 Echvi_0417: Echvi_0417 - hypothetical protein, at 457,575 to 457,829 _0417 Echvi_0418: Echvi_0418 - Deoxycytidylate deaminase, at 458,064 to 459,644 _0418 Position (kb) 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1at 456.581 kb on + strandat 456.582 kb on - strandat 456.603 kb on - strand, within Echvi_0416at 456.643 kb on + strandat 456.699 kb on - strand, within Echvi_0416at 456.701 kb on + strand, within Echvi_0416at 456.702 kb on - strand, within Echvi_0416at 456.727 kb on + strand, within Echvi_0416at 456.728 kb on - strand, within Echvi_0416at 456.774 kb on - strand, within Echvi_0416at 456.774 kb on - strand, within Echvi_0416at 456.778 kb on + strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.783 kb on - strand, within Echvi_0416at 456.809 kb on - strand, within Echvi_0416at 456.902 kb on - strand, within Echvi_0416at 457.294 kb on + strand, within Echvi_0416at 457.326 kb on + strandat 457.327 kb on - strandat 457.334 kb on + strandat 457.334 kb on + strandat 457.423 kb on + strandat 457.423 kb on + strandat 457.423 kb on + strandat 457.423 kb on + strandat 457.424 kb on - strandat 457.424 kb on - strandat 457.424 kb on - strandat 457.425 kb on + strandat 457.426 kb on - strandat 457.426 kb on - strandat 457.426 kb on - strandat 457.426 kb on - strandat 457.456 kb on + strandat 457.476 kb on - strandat 457.555 kb on + strandat 457.577 kb on - strandat 457.650 kb on + strand, within Echvi_0417at 457.650 kb on + strand, within Echvi_0417at 457.667 kb on - strand, within Echvi_0417at 457.667 kb on - strand, within Echvi_0417at 457.667 kb on - strand, within Echvi_0417at 457.699 kb on + strand, within Echvi_0417at 457.716 kb on - strand, within Echvi_0417at 457.716 kb on - strand, within Echvi_0417at 457.718 kb on + strand, within Echvi_0417at 457.718 kb on + strand, within Echvi_0417at 457.738 kb on + strand, within Echvi_0417at 457.738 kb on + strand, within Echvi_0417at 457.741 kb on + strand, within Echvi_0417at 457.741 kb on + strand, within Echvi_0417at 457.741 kb on + strand, within Echvi_0417at 457.742 kb on - strand, within Echvi_0417at 457.742 kb on - strand, within Echvi_0417at 457.754 kb on + strand, within Echvi_0417at 457.755 kb on - strand, within Echvi_0417at 457.755 kb on - strand, within Echvi_0417at 457.757 kb on + strand, within Echvi_0417at 457.757 kb on + strand, within Echvi_0417at 457.758 kb on - strand, within Echvi_0417at 457.852 kb on + strandat 457.867 kb on + strandat 457.893 kb on - strandat 457.893 kb on - strandat 457.893 kb on - strandat 457.894 kb on + strandat 457.895 kb on - strandat 457.898 kb on - strandat 457.898 kb on - strandat 457.902 kb on + strandat 457.902 kb on + strandat 457.903 kb on - strandat 457.907 kb on - strandat 457.917 kb on + strandat 457.933 kb on - strandat 457.997 kb on - strandat 458.045 kb on - strandat 458.063 kb on + strandat 458.108 kb on + strandat 458.129 kb on + strandat 458.129 kb on + strandat 458.130 kb on - strandat 458.240 kb on - strand, within Echvi_0418at 458.240 kb on - strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.248 kb on + strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.250 kb on + strand, within Echvi_0418at 458.288 kb on - strand, within Echvi_0418at 458.290 kb on + strand, within Echvi_0418at 458.315 kb on + strand, within Echvi_0418at 458.356 kb on + strand, within Echvi_0418at 458.378 kb on + strandat 458.394 kb on + strand, within Echvi_0418at 458.394 kb on + strand, within Echvi_0418at 458.394 kb on + strand, within Echvi_0418at 458.395 kb on - strand, within Echvi_0418at 458.395 kb on - strand, within Echvi_0418at 458.408 kb on - strand, within Echvi_0418at 458.425 kb on + strand, within Echvi_0418at 458.426 kb on - strand, within Echvi_0418at 458.448 kb on + strand, within Echvi_0418at 458.459 kb on + strand, within Echvi_0418at 458.460 kb on - strand, within Echvi_0418at 458.460 kb on - strand, within Echvi_0418at 458.460 kb on - strand, within Echvi_0418at 458.479 kb on + strand, within Echvi_0418at 458.480 kb on - strand, within Echvi_0418at 458.517 kb on - strand, within Echvi_0418at 458.531 kb on - strand, within Echvi_0418at 458.561 kb on - strand, within Echvi_0418at 458.673 kb on - strand, within Echvi_0418at 458.673 kb on - strand, within Echvi_0418at 458.674 kb on + strand, within Echvi_0418at 458.706 kb on - strand, within Echvi_0418at 458.738 kb on + strand, within Echvi_0418at 458.765 kb on - strand, within Echvi_0418at 458.778 kb on - strand, within Echvi_0418at 458.790 kb on - strand, within Echvi_0418

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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456,581 + +1.7
456,582 - +1.3
456,603 - Echvi_0416 0.10 -0.4
456,643 + -0.0
456,699 - Echvi_0416 0.21 +1.0
456,701 + Echvi_0416 0.21 -0.1
456,702 - Echvi_0416 0.21 +0.3
456,727 + Echvi_0416 0.24 -1.2
456,728 - Echvi_0416 0.24 +0.2
456,774 - Echvi_0416 0.29 +0.7
456,774 - Echvi_0416 0.29 -0.5
456,778 + Echvi_0416 0.29 +0.5
456,779 - Echvi_0416 0.30 -2.6
456,779 - Echvi_0416 0.30 -0.5
456,779 - Echvi_0416 0.30 -1.0
456,779 - Echvi_0416 0.30 -1.6
456,779 - Echvi_0416 0.30 +0.1
456,783 - Echvi_0416 0.30 -0.2
456,809 - Echvi_0416 0.33 -0.9
456,902 - Echvi_0416 0.43 +0.5
457,294 + Echvi_0416 0.87 +0.4
457,326 + +1.0
457,327 - -1.0
457,334 + -1.0
457,334 + -0.6
457,423 + +0.4
457,423 + -0.7
457,423 + -0.0
457,423 + +1.1
457,424 - -1.9
457,424 - -0.0
457,424 - -0.0
457,425 + -1.1
457,426 - +0.3
457,426 - -1.5
457,426 - +0.2
457,426 - -0.4
457,456 + +0.1
457,476 - -0.5
457,555 + +0.1
457,577 - +0.4
457,650 + Echvi_0417 0.29 +1.2
457,650 + Echvi_0417 0.29 -3.1
457,667 - Echvi_0417 0.36 -0.1
457,667 - Echvi_0417 0.36 +1.0
457,667 - Echvi_0417 0.36 +0.8
457,699 + Echvi_0417 0.49 -0.4
457,716 - Echvi_0417 0.55 -1.4
457,716 - Echvi_0417 0.55 -0.8
457,718 + Echvi_0417 0.56 -1.1
457,718 + Echvi_0417 0.56 -0.5
457,738 + Echvi_0417 0.64 -0.5
457,738 + Echvi_0417 0.64 -0.7
457,741 + Echvi_0417 0.65 -0.6
457,741 + Echvi_0417 0.65 +0.3
457,741 + Echvi_0417 0.65 -0.9
457,742 - Echvi_0417 0.65 +0.2
457,742 - Echvi_0417 0.65 -1.5
457,754 + Echvi_0417 0.70 +0.1
457,755 - Echvi_0417 0.71 -1.1
457,755 - Echvi_0417 0.71 -0.8
457,757 + Echvi_0417 0.71 -0.0
457,757 + Echvi_0417 0.71 -2.0
457,758 - Echvi_0417 0.72 -0.6
457,852 + +1.2
457,867 + +0.9
457,893 - -0.3
457,893 - -0.6
457,893 - +0.1
457,894 + +0.6
457,895 - -0.7
457,898 - -1.5
457,898 - +1.1
457,902 + -1.5
457,902 + +0.1
457,903 - +0.3
457,907 - -0.3
457,917 + -0.9
457,933 - -0.0
457,997 - -0.4
458,045 - +0.5
458,063 + +0.7
458,108 + -0.1
458,129 + +0.3
458,129 + -1.5
458,130 - -0.2
458,240 - Echvi_0418 0.11 +0.3
458,240 - Echvi_0418 0.11 -2.2
458,244 + Echvi_0418 0.11 -0.2
458,244 + Echvi_0418 0.11 -0.7
458,244 + Echvi_0418 0.11 +1.1
458,244 + Echvi_0418 0.11 +1.1
458,248 + Echvi_0418 0.12 +0.7
458,249 - Echvi_0418 0.12 +1.6
458,249 - Echvi_0418 0.12 +0.2
458,249 - Echvi_0418 0.12 +0.4
458,249 - Echvi_0418 0.12 +0.2
458,250 + Echvi_0418 0.12 -0.4
458,288 - Echvi_0418 0.14 -0.4
458,290 + Echvi_0418 0.14 -1.6
458,315 + Echvi_0418 0.16 +0.4
458,356 + Echvi_0418 0.18 -0.6
458,378 + -0.6
458,394 + Echvi_0418 0.21 +0.1
458,394 + Echvi_0418 0.21 -1.2
458,394 + Echvi_0418 0.21 +1.0
458,395 - Echvi_0418 0.21 +0.0
458,395 - Echvi_0418 0.21 +0.5
458,408 - Echvi_0418 0.22 -0.6
458,425 + Echvi_0418 0.23 -0.3
458,426 - Echvi_0418 0.23 +0.1
458,448 + Echvi_0418 0.24 +0.1
458,459 + Echvi_0418 0.25 +1.5
458,460 - Echvi_0418 0.25 +0.4
458,460 - Echvi_0418 0.25 +0.3
458,460 - Echvi_0418 0.25 +1.0
458,479 + Echvi_0418 0.26 -0.4
458,480 - Echvi_0418 0.26 +0.4
458,517 - Echvi_0418 0.29 +0.1
458,531 - Echvi_0418 0.30 +0.2
458,561 - Echvi_0418 0.31 -0.7
458,673 - Echvi_0418 0.39 +1.0
458,673 - Echvi_0418 0.39 +1.0
458,674 + Echvi_0418 0.39 +0.4
458,706 - Echvi_0418 0.41 +1.1
458,738 + Echvi_0418 0.43 +0.0
458,765 - Echvi_0418 0.44 -1.0
458,778 - Echvi_0418 0.45 +1.5
458,790 - Echvi_0418 0.46 +0.0

Or see this region's nucleotide sequence