Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0404

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0403 and Echvi_0404 are separated by 143 nucleotidesEchvi_0404 and Echvi_0405 are separated by 87 nucleotides Echvi_0403: Echvi_0403 - Endoglucanase, at 433,091 to 437,203 _0403 Echvi_0404: Echvi_0404 - hypothetical protein, at 437,347 to 440,667 _0404 Echvi_0405: Echvi_0405 - L-arabinose isomerase, at 440,755 to 442,245 _0405 Position (kb) 437 438 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 436.369 kb on - strand, within Echvi_0403at 436.507 kb on + strand, within Echvi_0403at 436.535 kb on + strand, within Echvi_0403at 436.535 kb on + strand, within Echvi_0403at 436.559 kb on - strand, within Echvi_0403at 436.598 kb on - strand, within Echvi_0403at 436.600 kb on + strand, within Echvi_0403at 436.601 kb on - strand, within Echvi_0403at 436.601 kb on - strand, within Echvi_0403at 436.604 kb on + strand, within Echvi_0403at 436.604 kb on + strand, within Echvi_0403at 436.604 kb on + strand, within Echvi_0403at 436.605 kb on - strand, within Echvi_0403at 436.605 kb on - strand, within Echvi_0403at 436.605 kb on - strand, within Echvi_0403at 436.605 kb on - strand, within Echvi_0403at 436.620 kb on - strand, within Echvi_0403at 436.635 kb on + strand, within Echvi_0403at 436.695 kb on + strand, within Echvi_0403at 436.695 kb on + strand, within Echvi_0403at 436.696 kb on - strand, within Echvi_0403at 436.696 kb on - strand, within Echvi_0403at 436.732 kb on - strand, within Echvi_0403at 436.809 kb on + strandat 437.006 kb on - strandat 437.035 kb on - strandat 437.151 kb on + strandat 437.151 kb on + strandat 437.183 kb on + strandat 437.184 kb on - strandat 437.203 kb on + strandat 437.204 kb on - strandat 437.204 kb on - strandat 437.204 kb on - strandat 437.204 kb on - strandat 437.208 kb on + strandat 437.209 kb on - strandat 437.233 kb on + strandat 437.236 kb on + strandat 437.236 kb on + strandat 437.284 kb on - strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.312 kb on + strandat 437.317 kb on + strandat 437.317 kb on + strandat 437.361 kb on + strandat 437.393 kb on - strandat 437.400 kb on - strandat 437.451 kb on - strandat 437.552 kb on - strandat 437.569 kb on - strandat 437.609 kb on + strandat 437.648 kb on + strandat 437.724 kb on + strand, within Echvi_0404at 437.727 kb on + strand, within Echvi_0404at 437.739 kb on - strand, within Echvi_0404at 437.744 kb on + strand, within Echvi_0404at 437.744 kb on + strand, within Echvi_0404at 437.744 kb on + strand, within Echvi_0404at 437.802 kb on + strand, within Echvi_0404at 437.882 kb on - strand, within Echvi_0404at 437.882 kb on - strand, within Echvi_0404at 437.882 kb on - strand, within Echvi_0404at 437.935 kb on + strand, within Echvi_0404at 437.935 kb on + strand, within Echvi_0404at 437.935 kb on + strand, within Echvi_0404at 437.940 kb on - strand, within Echvi_0404at 437.940 kb on - strand, within Echvi_0404at 437.972 kb on - strand, within Echvi_0404at 438.001 kb on + strand, within Echvi_0404at 438.143 kb on - strand, within Echvi_0404at 438.143 kb on - strand, within Echvi_0404at 438.184 kb on - strand, within Echvi_0404at 438.204 kb on + strand, within Echvi_0404at 438.210 kb on + strand, within Echvi_0404at 438.235 kb on - strand, within Echvi_0404at 438.268 kb on - strand, within Echvi_0404at 438.274 kb on + strand, within Echvi_0404at 438.332 kb on - strand, within Echvi_0404at 438.332 kb on - strand, within Echvi_0404at 438.334 kb on - strand, within Echvi_0404at 438.393 kb on - strand, within Echvi_0404at 438.393 kb on - strand, within Echvi_0404at 438.401 kb on + strand, within Echvi_0404at 438.401 kb on + strand, within Echvi_0404at 438.402 kb on - strand, within Echvi_0404at 438.404 kb on - strand, within Echvi_0404at 438.468 kb on - strand, within Echvi_0404at 438.561 kb on - strand, within Echvi_0404at 438.672 kb on + strand, within Echvi_0404at 438.818 kb on + strand, within Echvi_0404at 438.822 kb on + strand, within Echvi_0404at 438.823 kb on - strand, within Echvi_0404at 438.827 kb on - strand, within Echvi_0404at 438.861 kb on + strand, within Echvi_0404at 438.899 kb on + strand, within Echvi_0404at 438.983 kb on + strand, within Echvi_0404at 438.985 kb on + strand, within Echvi_0404at 438.985 kb on + strand, within Echvi_0404at 438.998 kb on + strand, within Echvi_0404at 439.133 kb on + strand, within Echvi_0404at 439.133 kb on + strand, within Echvi_0404at 439.134 kb on - strand, within Echvi_0404at 439.134 kb on - strand, within Echvi_0404at 439.157 kb on - strand, within Echvi_0404at 439.209 kb on + strand, within Echvi_0404at 439.314 kb on + strand, within Echvi_0404at 439.317 kb on + strand, within Echvi_0404at 439.401 kb on + strand, within Echvi_0404at 439.422 kb on + strand, within Echvi_0404at 439.433 kb on + strand, within Echvi_0404at 439.594 kb on + strand, within Echvi_0404at 439.603 kb on + strand, within Echvi_0404at 439.652 kb on + strand, within Echvi_0404at 439.700 kb on + strand, within Echvi_0404at 439.700 kb on + strand, within Echvi_0404at 439.803 kb on + strand, within Echvi_0404at 439.804 kb on - strand, within Echvi_0404at 439.804 kb on - strand, within Echvi_0404at 439.807 kb on + strand, within Echvi_0404at 439.807 kb on + strand, within Echvi_0404at 439.807 kb on + strand, within Echvi_0404at 439.840 kb on + strand, within Echvi_0404at 439.840 kb on + strand, within Echvi_0404at 439.840 kb on + strand, within Echvi_0404at 439.841 kb on - strand, within Echvi_0404at 439.841 kb on - strand, within Echvi_0404at 439.897 kb on + strand, within Echvi_0404at 439.897 kb on + strand, within Echvi_0404at 439.898 kb on - strand, within Echvi_0404at 439.899 kb on + strand, within Echvi_0404at 439.900 kb on - strand, within Echvi_0404at 440.016 kb on + strand, within Echvi_0404at 440.017 kb on - strand, within Echvi_0404at 440.140 kb on + strand, within Echvi_0404at 440.144 kb on + strand, within Echvi_0404at 440.145 kb on - strand, within Echvi_0404at 440.228 kb on + strand, within Echvi_0404at 440.228 kb on + strand, within Echvi_0404at 440.228 kb on + strand, within Echvi_0404at 440.229 kb on - strand, within Echvi_0404at 440.229 kb on - strand, within Echvi_0404at 440.229 kb on - strand, within Echvi_0404at 440.235 kb on - strand, within Echvi_0404at 440.235 kb on - strand, within Echvi_0404at 440.397 kb on + strandat 440.397 kb on + strandat 440.398 kb on - strandat 440.433 kb on - strandat 440.438 kb on - strandat 440.671 kb on + strandat 440.685 kb on + strandat 440.705 kb on - strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.751 kb on + strandat 440.756 kb on + strandat 440.756 kb on + strandat 440.764 kb on + strandat 440.765 kb on - strandat 440.765 kb on - strandat 440.786 kb on + strandat 440.884 kb on + strandat 440.884 kb on + strandat 440.885 kb on - strandat 440.987 kb on + strand, within Echvi_0405at 440.987 kb on + strand, within Echvi_0405at 440.987 kb on + strand, within Echvi_0405at 441.013 kb on - strand, within Echvi_0405at 441.016 kb on - strand, within Echvi_0405at 441.072 kb on - strand, within Echvi_0405at 441.099 kb on + strand, within Echvi_0405at 441.099 kb on + strand, within Echvi_0405at 441.117 kb on + strand, within Echvi_0405at 441.117 kb on + strand, within Echvi_0405at 441.118 kb on - strand, within Echvi_0405at 441.121 kb on - strand, within Echvi_0405at 441.121 kb on - strand, within Echvi_0405at 441.311 kb on - strand, within Echvi_0405at 441.344 kb on + strand, within Echvi_0405at 441.351 kb on - strand, within Echvi_0405at 441.351 kb on - strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.631 kb on - strand, within Echvi_0405at 441.639 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.650 kb on - strand, within Echvi_0405at 441.650 kb on - strand, within Echvi_0405at 441.651 kb on + strand, within Echvi_0405at 441.652 kb on - strand, within Echvi_0405

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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436,369 - Echvi_0403 0.80 -1.5
436,507 + Echvi_0403 0.83 +1.0
436,535 + Echvi_0403 0.84 -0.1
436,535 + Echvi_0403 0.84 +1.0
436,559 - Echvi_0403 0.84 +2.4
436,598 - Echvi_0403 0.85 -2.5
436,600 + Echvi_0403 0.85 -0.1
436,601 - Echvi_0403 0.85 -0.2
436,601 - Echvi_0403 0.85 -0.9
436,604 + Echvi_0403 0.85 -0.7
436,604 + Echvi_0403 0.85 -0.9
436,604 + Echvi_0403 0.85 +0.7
436,605 - Echvi_0403 0.85 +0.5
436,605 - Echvi_0403 0.85 +1.5
436,605 - Echvi_0403 0.85 -0.5
436,605 - Echvi_0403 0.85 +0.7
436,620 - Echvi_0403 0.86 +0.5
436,635 + Echvi_0403 0.86 +1.1
436,695 + Echvi_0403 0.88 -1.0
436,695 + Echvi_0403 0.88 +0.2
436,696 - Echvi_0403 0.88 -1.1
436,696 - Echvi_0403 0.88 +2.8
436,732 - Echvi_0403 0.89 +1.2
436,809 + -0.9
437,006 - +1.0
437,035 - -0.9
437,151 + -0.2
437,151 + -0.4
437,183 + -1.0
437,184 - +0.3
437,203 + +0.6
437,204 - -0.0
437,204 - -0.1
437,204 - +0.4
437,204 - +0.7
437,208 + -0.0
437,209 - -0.4
437,233 + +2.0
437,236 + +1.2
437,236 + +0.4
437,284 - -0.9
437,308 + +0.2
437,308 + -0.8
437,312 + -0.5
437,317 + +0.9
437,317 + -0.3
437,361 + +0.3
437,393 - -2.6
437,400 - -2.3
437,451 - +0.6
437,552 - +1.0
437,569 - -1.2
437,609 + +0.5
437,648 + -1.9
437,724 + Echvi_0404 0.11 -0.0
437,727 + Echvi_0404 0.11 +0.6
437,739 - Echvi_0404 0.12 -1.1
437,744 + Echvi_0404 0.12 -1.1
437,744 + Echvi_0404 0.12 -3.3
437,744 + Echvi_0404 0.12 +1.4
437,802 + Echvi_0404 0.14 -0.1
437,882 - Echvi_0404 0.16 -0.6
437,882 - Echvi_0404 0.16 -0.0
437,882 - Echvi_0404 0.16 -0.2
437,935 + Echvi_0404 0.18 -1.6
437,935 + Echvi_0404 0.18 +0.2
437,935 + Echvi_0404 0.18 -1.6
437,940 - Echvi_0404 0.18 -2.7
437,940 - Echvi_0404 0.18 -1.6
437,972 - Echvi_0404 0.19 -1.0
438,001 + Echvi_0404 0.20 +0.1
438,143 - Echvi_0404 0.24 -0.8
438,143 - Echvi_0404 0.24 -1.0
438,184 - Echvi_0404 0.25 -1.2
438,204 + Echvi_0404 0.26 +0.0
438,210 + Echvi_0404 0.26 -2.4
438,235 - Echvi_0404 0.27 -0.6
438,268 - Echvi_0404 0.28 -1.3
438,274 + Echvi_0404 0.28 -0.2
438,332 - Echvi_0404 0.30 +0.1
438,332 - Echvi_0404 0.30 -2.0
438,334 - Echvi_0404 0.30 -1.7
438,393 - Echvi_0404 0.31 -2.2
438,393 - Echvi_0404 0.31 +2.7
438,401 + Echvi_0404 0.32 +0.4
438,401 + Echvi_0404 0.32 +1.0
438,402 - Echvi_0404 0.32 -1.5
438,404 - Echvi_0404 0.32 -1.0
438,468 - Echvi_0404 0.34 +0.6
438,561 - Echvi_0404 0.37 -2.2
438,672 + Echvi_0404 0.40 +1.7
438,818 + Echvi_0404 0.44 +0.8
438,822 + Echvi_0404 0.44 -0.2
438,823 - Echvi_0404 0.44 -1.3
438,827 - Echvi_0404 0.45 -2.1
438,861 + Echvi_0404 0.46 +0.0
438,899 + Echvi_0404 0.47 -0.6
438,983 + Echvi_0404 0.49 -1.3
438,985 + Echvi_0404 0.49 +0.3
438,985 + Echvi_0404 0.49 +0.7
438,998 + Echvi_0404 0.50 +0.1
439,133 + Echvi_0404 0.54 -0.1
439,133 + Echvi_0404 0.54 +0.6
439,134 - Echvi_0404 0.54 -0.5
439,134 - Echvi_0404 0.54 -1.9
439,157 - Echvi_0404 0.55 -0.0
439,209 + Echvi_0404 0.56 +0.1
439,314 + Echvi_0404 0.59 -0.7
439,317 + Echvi_0404 0.59 +1.2
439,401 + Echvi_0404 0.62 +0.7
439,422 + Echvi_0404 0.62 +2.7
439,433 + Echvi_0404 0.63 +0.9
439,594 + Echvi_0404 0.68 +0.2
439,603 + Echvi_0404 0.68 -0.1
439,652 + Echvi_0404 0.69 +1.0
439,700 + Echvi_0404 0.71 -1.2
439,700 + Echvi_0404 0.71 -0.9
439,803 + Echvi_0404 0.74 -0.0
439,804 - Echvi_0404 0.74 -1.4
439,804 - Echvi_0404 0.74 -1.6
439,807 + Echvi_0404 0.74 -0.7
439,807 + Echvi_0404 0.74 -0.1
439,807 + Echvi_0404 0.74 +0.1
439,840 + Echvi_0404 0.75 +0.8
439,840 + Echvi_0404 0.75 -1.0
439,840 + Echvi_0404 0.75 +2.3
439,841 - Echvi_0404 0.75 -2.2
439,841 - Echvi_0404 0.75 -1.0
439,897 + Echvi_0404 0.77 -0.3
439,897 + Echvi_0404 0.77 +0.8
439,898 - Echvi_0404 0.77 +0.8
439,899 + Echvi_0404 0.77 +0.0
439,900 - Echvi_0404 0.77 +0.5
440,016 + Echvi_0404 0.80 -2.0
440,017 - Echvi_0404 0.80 -2.1
440,140 + Echvi_0404 0.84 -0.5
440,144 + Echvi_0404 0.84 -0.2
440,145 - Echvi_0404 0.84 -1.1
440,228 + Echvi_0404 0.87 -0.4
440,228 + Echvi_0404 0.87 -0.9
440,228 + Echvi_0404 0.87 -1.2
440,229 - Echvi_0404 0.87 -1.5
440,229 - Echvi_0404 0.87 -0.4
440,229 - Echvi_0404 0.87 -1.9
440,235 - Echvi_0404 0.87 -1.2
440,235 - Echvi_0404 0.87 -0.4
440,397 + +0.1
440,397 + -0.2
440,398 - -0.0
440,433 - -1.9
440,438 - -0.5
440,671 + +2.0
440,685 + +0.1
440,705 - +0.2
440,727 + +0.4
440,727 + -0.4
440,751 + -0.8
440,756 + -0.3
440,756 + +0.1
440,764 + +1.7
440,765 - -0.2
440,765 - -3.4
440,786 + -0.6
440,884 + -0.6
440,884 + -1.2
440,885 - -0.6
440,987 + Echvi_0405 0.16 -1.0
440,987 + Echvi_0405 0.16 -0.6
440,987 + Echvi_0405 0.16 +0.1
441,013 - Echvi_0405 0.17 -1.4
441,016 - Echvi_0405 0.18 -0.3
441,072 - Echvi_0405 0.21 -1.4
441,099 + Echvi_0405 0.23 +1.1
441,099 + Echvi_0405 0.23 +0.1
441,117 + Echvi_0405 0.24 -1.2
441,117 + Echvi_0405 0.24 -1.2
441,118 - Echvi_0405 0.24 +1.0
441,121 - Echvi_0405 0.25 -0.3
441,121 - Echvi_0405 0.25 -0.4
441,311 - Echvi_0405 0.37 -0.2
441,344 + Echvi_0405 0.40 -0.4
441,351 - Echvi_0405 0.40 -1.8
441,351 - Echvi_0405 0.40 -2.0
441,630 + Echvi_0405 0.59 +1.0
441,630 + Echvi_0405 0.59 -0.9
441,630 + Echvi_0405 0.59 +0.3
441,630 + Echvi_0405 0.59 -0.6
441,631 - Echvi_0405 0.59 -2.7
441,639 + Echvi_0405 0.59 +0.2
441,649 + Echvi_0405 0.60 +0.1
441,649 + Echvi_0405 0.60 +0.7
441,649 + Echvi_0405 0.60 +0.1
441,649 + Echvi_0405 0.60 -0.3
441,649 + Echvi_0405 0.60 -0.4
441,650 - Echvi_0405 0.60 -0.0
441,650 - Echvi_0405 0.60 +0.0
441,651 + Echvi_0405 0.60 -0.1
441,652 - Echvi_0405 0.60 -0.7

Or see this region's nucleotide sequence