Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0401

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0400 and Echvi_0401 are separated by 80 nucleotidesEchvi_0401 and Echvi_0402 are separated by 18 nucleotides Echvi_0400: Echvi_0400 - hypothetical protein, at 425,837 to 428,392 _0400 Echvi_0401: Echvi_0401 - SusD family., at 428,473 to 429,894 _0401 Echvi_0402: Echvi_0402 - TonB-linked outer membrane protein, SusC/RagA family, at 429,913 to 433,086 _0402 Position (kb) 428 429 430Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 427.580 kb on - strand, within Echvi_0400at 427.588 kb on + strand, within Echvi_0400at 427.636 kb on + strand, within Echvi_0400at 427.638 kb on + strand, within Echvi_0400at 427.638 kb on + strand, within Echvi_0400at 427.764 kb on + strand, within Echvi_0400at 427.764 kb on + strand, within Echvi_0400at 427.764 kb on + strand, within Echvi_0400at 427.765 kb on - strand, within Echvi_0400at 427.769 kb on - strand, within Echvi_0400at 427.870 kb on + strand, within Echvi_0400at 427.925 kb on - strand, within Echvi_0400at 427.939 kb on + strand, within Echvi_0400at 427.950 kb on + strand, within Echvi_0400at 427.977 kb on + strand, within Echvi_0400at 427.978 kb on - strand, within Echvi_0400at 428.056 kb on - strand, within Echvi_0400at 428.056 kb on - strand, within Echvi_0400at 428.056 kb on - strand, within Echvi_0400at 428.103 kb on - strand, within Echvi_0400at 428.205 kb on + strandat 428.251 kb on + strandat 428.252 kb on - strandat 428.252 kb on - strandat 428.277 kb on - strandat 428.277 kb on - strandat 428.320 kb on + strandat 428.393 kb on - strandat 428.393 kb on - strandat 428.396 kb on + strandat 428.396 kb on + strandat 428.397 kb on - strandat 428.397 kb on - strandat 428.397 kb on - strandat 428.461 kb on - strandat 428.466 kb on + strandat 428.467 kb on - strandat 428.474 kb on + strandat 428.474 kb on + strandat 428.580 kb on + strandat 428.581 kb on - strandat 428.585 kb on + strandat 428.586 kb on - strandat 428.723 kb on - strand, within Echvi_0401at 428.749 kb on + strand, within Echvi_0401at 428.754 kb on - strand, within Echvi_0401at 428.754 kb on - strand, within Echvi_0401at 428.801 kb on + strand, within Echvi_0401at 428.972 kb on + strand, within Echvi_0401at 429.054 kb on + strand, within Echvi_0401at 429.068 kb on + strand, within Echvi_0401at 429.166 kb on + strand, within Echvi_0401at 429.166 kb on + strand, within Echvi_0401at 429.176 kb on + strand, within Echvi_0401at 429.177 kb on - strand, within Echvi_0401at 429.177 kb on - strand, within Echvi_0401at 429.243 kb on - strand, within Echvi_0401at 429.285 kb on - strand, within Echvi_0401at 429.396 kb on - strand, within Echvi_0401at 429.537 kb on + strand, within Echvi_0401at 429.537 kb on + strand, within Echvi_0401at 429.709 kb on - strand, within Echvi_0401at 429.711 kb on - strand, within Echvi_0401at 429.711 kb on - strand, within Echvi_0401at 429.726 kb on + strand, within Echvi_0401at 429.726 kb on + strand, within Echvi_0401at 429.726 kb on + strand, within Echvi_0401at 429.728 kb on + strand, within Echvi_0401at 429.749 kb on + strand, within Echvi_0401at 429.749 kb on + strand, within Echvi_0401at 429.750 kb on - strand, within Echvi_0401at 429.794 kb on + strandat 429.794 kb on + strandat 429.874 kb on + strandat 429.875 kb on - strandat 429.880 kb on + strandat 429.881 kb on - strandat 429.884 kb on + strandat 429.885 kb on - strandat 429.904 kb on - strandat 429.960 kb on - strandat 429.969 kb on - strandat 430.031 kb on + strandat 430.044 kb on + strandat 430.044 kb on + strandat 430.046 kb on + strandat 430.046 kb on + strandat 430.046 kb on + strandat 430.046 kb on + strandat 430.047 kb on - strandat 430.059 kb on + strandat 430.119 kb on + strandat 430.119 kb on + strandat 430.132 kb on - strandat 430.151 kb on + strandat 430.170 kb on - strandat 430.328 kb on + strand, within Echvi_0402at 430.410 kb on + strand, within Echvi_0402at 430.410 kb on + strand, within Echvi_0402at 430.555 kb on + strand, within Echvi_0402at 430.563 kb on + strand, within Echvi_0402at 430.563 kb on + strand, within Echvi_0402at 430.577 kb on + strand, within Echvi_0402at 430.600 kb on + strand, within Echvi_0402at 430.600 kb on + strand, within Echvi_0402at 430.600 kb on + strand, within Echvi_0402at 430.601 kb on - strand, within Echvi_0402at 430.601 kb on - strand, within Echvi_0402at 430.641 kb on + strand, within Echvi_0402at 430.665 kb on + strand, within Echvi_0402at 430.666 kb on - strand, within Echvi_0402at 430.676 kb on - strand, within Echvi_0402

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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427,580 - Echvi_0400 0.68 -1.0
427,588 + Echvi_0400 0.69 +0.6
427,636 + Echvi_0400 0.70 -0.8
427,638 + Echvi_0400 0.70 +1.1
427,638 + Echvi_0400 0.70 +0.5
427,764 + Echvi_0400 0.75 -0.5
427,764 + Echvi_0400 0.75 +1.0
427,764 + Echvi_0400 0.75 -0.4
427,765 - Echvi_0400 0.75 +0.1
427,769 - Echvi_0400 0.76 +0.3
427,870 + Echvi_0400 0.80 -0.0
427,925 - Echvi_0400 0.82 -0.5
427,939 + Echvi_0400 0.82 +2.7
427,950 + Echvi_0400 0.83 -0.7
427,977 + Echvi_0400 0.84 -0.8
427,978 - Echvi_0400 0.84 -0.2
428,056 - Echvi_0400 0.87 +0.3
428,056 - Echvi_0400 0.87 +1.4
428,056 - Echvi_0400 0.87 -0.6
428,103 - Echvi_0400 0.89 -0.9
428,205 + -0.9
428,251 + -2.2
428,252 - -0.1
428,252 - -0.5
428,277 - -0.3
428,277 - +1.3
428,320 + -0.6
428,393 - +0.4
428,393 - +0.0
428,396 + -3.2
428,396 + +0.3
428,397 - +0.4
428,397 - +0.8
428,397 - -0.7
428,461 - -0.6
428,466 + +0.8
428,467 - -0.5
428,474 + +0.1
428,474 + -0.8
428,580 + +0.4
428,581 - +0.6
428,585 + -0.2
428,586 - -0.7
428,723 - Echvi_0401 0.18 -0.0
428,749 + Echvi_0401 0.19 -2.0
428,754 - Echvi_0401 0.20 +0.1
428,754 - Echvi_0401 0.20 -0.0
428,801 + Echvi_0401 0.23 +0.1
428,972 + Echvi_0401 0.35 -1.1
429,054 + Echvi_0401 0.41 +0.3
429,068 + Echvi_0401 0.42 +1.1
429,166 + Echvi_0401 0.49 -0.9
429,166 + Echvi_0401 0.49 -1.7
429,176 + Echvi_0401 0.49 -0.6
429,177 - Echvi_0401 0.50 -0.7
429,177 - Echvi_0401 0.50 -0.2
429,243 - Echvi_0401 0.54 +0.9
429,285 - Echvi_0401 0.57 +0.3
429,396 - Echvi_0401 0.65 -0.8
429,537 + Echvi_0401 0.75 -2.3
429,537 + Echvi_0401 0.75 -1.1
429,709 - Echvi_0401 0.87 +1.0
429,711 - Echvi_0401 0.87 +1.0
429,711 - Echvi_0401 0.87 -0.1
429,726 + Echvi_0401 0.88 -0.6
429,726 + Echvi_0401 0.88 -0.5
429,726 + Echvi_0401 0.88 -0.9
429,728 + Echvi_0401 0.88 -1.4
429,749 + Echvi_0401 0.90 -0.2
429,749 + Echvi_0401 0.90 +0.4
429,750 - Echvi_0401 0.90 -0.9
429,794 + -1.0
429,794 + -0.9
429,874 + -0.3
429,875 - -0.2
429,880 + +0.3
429,881 - -0.5
429,884 + -0.3
429,885 - -0.0
429,904 - -3.1
429,960 - -0.5
429,969 - -1.6
430,031 + +0.2
430,044 + -0.7
430,044 + -0.2
430,046 + -0.2
430,046 + -0.4
430,046 + +4.5
430,046 + -2.1
430,047 - +1.1
430,059 + -0.7
430,119 + -1.5
430,119 + -0.9
430,132 - +0.3
430,151 + -1.0
430,170 - -1.2
430,328 + Echvi_0402 0.13 -0.7
430,410 + Echvi_0402 0.16 -0.0
430,410 + Echvi_0402 0.16 +0.8
430,555 + Echvi_0402 0.20 -0.8
430,563 + Echvi_0402 0.20 +0.3
430,563 + Echvi_0402 0.20 -0.2
430,577 + Echvi_0402 0.21 -0.3
430,600 + Echvi_0402 0.22 +0.1
430,600 + Echvi_0402 0.22 +1.0
430,600 + Echvi_0402 0.22 -0.8
430,601 - Echvi_0402 0.22 -0.3
430,601 - Echvi_0402 0.22 +1.0
430,641 + Echvi_0402 0.23 -0.1
430,665 + Echvi_0402 0.24 +0.3
430,666 - Echvi_0402 0.24 -1.4
430,676 - Echvi_0402 0.24 +1.0

Or see this region's nucleotide sequence