Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0398

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0397 and Echvi_0398 are separated by 23 nucleotidesEchvi_0398 and Echvi_0399 are separated by 290 nucleotides Echvi_0397: Echvi_0397 - hypothetical protein, at 421,112 to 422,476 _0397 Echvi_0398: Echvi_0398 - Beta-glucosidase-related glycosidases, at 422,500 to 424,824 _0398 Echvi_0399: Echvi_0399 - Lysophospholipase L1 and related esterases, at 425,115 to 425,825 _0399 Position (kb) 422 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 421.557 kb on + strand, within Echvi_0397at 421.561 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.584 kb on - strand, within Echvi_0397at 421.593 kb on + strand, within Echvi_0397at 421.594 kb on - strand, within Echvi_0397at 421.608 kb on - strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.691 kb on - strand, within Echvi_0397at 421.736 kb on + strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.838 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397at 421.940 kb on + strand, within Echvi_0397at 421.941 kb on - strand, within Echvi_0397at 421.996 kb on - strand, within Echvi_0397at 421.999 kb on + strand, within Echvi_0397at 421.999 kb on + strand, within Echvi_0397at 422.000 kb on - strand, within Echvi_0397at 422.000 kb on - strand, within Echvi_0397at 422.002 kb on - strand, within Echvi_0397at 422.059 kb on + strand, within Echvi_0397at 422.191 kb on - strand, within Echvi_0397at 422.248 kb on + strand, within Echvi_0397at 422.278 kb on - strand, within Echvi_0397at 422.278 kb on - strand, within Echvi_0397at 422.283 kb on + strand, within Echvi_0397at 422.283 kb on + strand, within Echvi_0397at 422.284 kb on - strand, within Echvi_0397at 422.284 kb on - strand, within Echvi_0397at 422.284 kb on - strand, within Echvi_0397at 422.636 kb on + strandat 422.810 kb on + strand, within Echvi_0398at 422.981 kb on + strand, within Echvi_0398at 422.981 kb on + strand, within Echvi_0398at 422.985 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 423.000 kb on - strand, within Echvi_0398at 423.063 kb on + strand, within Echvi_0398at 423.286 kb on + strand, within Echvi_0398at 423.370 kb on + strand, within Echvi_0398at 423.370 kb on + strand, within Echvi_0398at 423.371 kb on - strand, within Echvi_0398at 423.518 kb on + strand, within Echvi_0398at 423.527 kb on + strand, within Echvi_0398at 423.583 kb on + strand, within Echvi_0398at 423.584 kb on - strand, within Echvi_0398at 423.589 kb on + strand, within Echvi_0398at 423.590 kb on - strand, within Echvi_0398at 423.644 kb on + strand, within Echvi_0398at 423.645 kb on - strand, within Echvi_0398at 423.650 kb on + strand, within Echvi_0398at 423.651 kb on - strand, within Echvi_0398at 423.688 kb on + strand, within Echvi_0398at 423.783 kb on + strandat 423.801 kb on + strand, within Echvi_0398at 423.801 kb on + strand, within Echvi_0398at 423.823 kb on + strand, within Echvi_0398at 423.823 kb on + strand, within Echvi_0398at 424.056 kb on + strand, within Echvi_0398at 424.058 kb on + strand, within Echvi_0398at 424.058 kb on + strand, within Echvi_0398at 424.059 kb on - strand, within Echvi_0398at 424.059 kb on - strand, within Echvi_0398at 424.059 kb on - strand, within Echvi_0398at 424.078 kb on - strand, within Echvi_0398at 424.078 kb on - strand, within Echvi_0398at 424.079 kb on + strand, within Echvi_0398at 424.177 kb on + strand, within Echvi_0398at 424.177 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.251 kb on + strand, within Echvi_0398at 424.305 kb on - strand, within Echvi_0398at 424.308 kb on - strand, within Echvi_0398at 424.308 kb on - strand, within Echvi_0398at 424.308 kb on - strand, within Echvi_0398at 424.479 kb on - strand, within Echvi_0398at 424.482 kb on - strand, within Echvi_0398at 424.514 kb on - strand, within Echvi_0398at 424.684 kb on + strandat 424.684 kb on + strandat 424.685 kb on - strandat 424.685 kb on - strandat 424.685 kb on - strandat 424.699 kb on + strandat 424.700 kb on - strandat 424.700 kb on - strandat 424.702 kb on - strandat 424.741 kb on - strandat 424.741 kb on - strandat 424.749 kb on + strandat 424.763 kb on - strandat 424.764 kb on + strandat 424.764 kb on + strandat 424.804 kb on - strandat 424.807 kb on - strandat 424.807 kb on - strandat 424.807 kb on - strandat 424.807 kb on - strandat 424.832 kb on + strandat 424.836 kb on + strandat 424.843 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 425.012 kb on + strandat 425.041 kb on + strandat 425.041 kb on + strandat 425.051 kb on + strandat 425.051 kb on + strandat 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.188 kb on + strand, within Echvi_0399at 425.188 kb on + strand, within Echvi_0399at 425.189 kb on - strand, within Echvi_0399at 425.195 kb on + strand, within Echvi_0399at 425.195 kb on + strand, within Echvi_0399at 425.196 kb on - strand, within Echvi_0399at 425.196 kb on - strand, within Echvi_0399at 425.198 kb on + strand, within Echvi_0399at 425.199 kb on - strand, within Echvi_0399at 425.199 kb on - strand, within Echvi_0399at 425.199 kb on - strand, within Echvi_0399at 425.367 kb on + strand, within Echvi_0399at 425.367 kb on + strand, within Echvi_0399at 425.524 kb on + strand, within Echvi_0399at 425.588 kb on + strand, within Echvi_0399at 425.589 kb on - strand, within Echvi_0399at 425.596 kb on - strand, within Echvi_0399at 425.600 kb on + strand, within Echvi_0399at 425.601 kb on - strand, within Echvi_0399at 425.601 kb on - strand, within Echvi_0399at 425.603 kb on + strand, within Echvi_0399at 425.608 kb on + strand, within Echvi_0399at 425.738 kb on - strand, within Echvi_0399at 425.738 kb on - strand, within Echvi_0399at 425.747 kb on + strand, within Echvi_0399

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
421,557 + Echvi_0397 0.33 -1.2
421,561 + Echvi_0397 0.33 +1.0
421,583 + Echvi_0397 0.35 -0.4
421,583 + Echvi_0397 0.35 +0.1
421,584 - Echvi_0397 0.35 -2.2
421,593 + Echvi_0397 0.35 -0.5
421,594 - Echvi_0397 0.35 -0.7
421,608 - Echvi_0397 0.36 -2.6
421,668 + Echvi_0397 0.41 -0.9
421,668 + Echvi_0397 0.41 -0.4
421,668 + Echvi_0397 0.41 -2.0
421,669 - Echvi_0397 0.41 -0.9
421,669 - Echvi_0397 0.41 -0.9
421,691 - Echvi_0397 0.42 -0.7
421,736 + Echvi_0397 0.46 +0.2
421,772 - Echvi_0397 0.48 -0.7
421,772 - Echvi_0397 0.48 -0.9
421,772 - Echvi_0397 0.48 -0.1
421,772 - Echvi_0397 0.48 -1.4
421,838 + Echvi_0397 0.53 +2.3
421,901 + Echvi_0397 0.58 +2.4
421,901 + Echvi_0397 0.58 -0.1
421,940 + Echvi_0397 0.61 -0.6
421,941 - Echvi_0397 0.61 -0.9
421,996 - Echvi_0397 0.65 -1.2
421,999 + Echvi_0397 0.65 -0.0
421,999 + Echvi_0397 0.65 +0.1
422,000 - Echvi_0397 0.65 -0.0
422,000 - Echvi_0397 0.65 +1.0
422,002 - Echvi_0397 0.65 +0.1
422,059 + Echvi_0397 0.69 +1.4
422,191 - Echvi_0397 0.79 +0.4
422,248 + Echvi_0397 0.83 -1.2
422,278 - Echvi_0397 0.85 -2.9
422,278 - Echvi_0397 0.85 +1.1
422,283 + Echvi_0397 0.86 +1.6
422,283 + Echvi_0397 0.86 -0.1
422,284 - Echvi_0397 0.86 +0.0
422,284 - Echvi_0397 0.86 +0.9
422,284 - Echvi_0397 0.86 -2.4
422,636 + +1.0
422,810 + Echvi_0398 0.13 -1.1
422,981 + Echvi_0398 0.21 -0.6
422,981 + Echvi_0398 0.21 -0.6
422,985 - Echvi_0398 0.21 -1.3
422,996 - Echvi_0398 0.21 -0.9
422,996 - Echvi_0398 0.21 -0.8
422,996 - Echvi_0398 0.21 +0.2
422,996 - Echvi_0398 0.21 +0.1
423,000 - Echvi_0398 0.22 -1.2
423,063 + Echvi_0398 0.24 -0.9
423,286 + Echvi_0398 0.34 -1.2
423,370 + Echvi_0398 0.37 -0.2
423,370 + Echvi_0398 0.37 -1.2
423,371 - Echvi_0398 0.37 +0.6
423,518 + Echvi_0398 0.44 -0.8
423,527 + Echvi_0398 0.44 -1.6
423,583 + Echvi_0398 0.47 -0.3
423,584 - Echvi_0398 0.47 +1.0
423,589 + Echvi_0398 0.47 +0.6
423,590 - Echvi_0398 0.47 +0.0
423,644 + Echvi_0398 0.49 +2.0
423,645 - Echvi_0398 0.49 -0.6
423,650 + Echvi_0398 0.49 +0.1
423,651 - Echvi_0398 0.50 +0.4
423,688 + Echvi_0398 0.51 -1.2
423,783 + -0.4
423,801 + Echvi_0398 0.56 +0.4
423,801 + Echvi_0398 0.56 +0.4
423,823 + Echvi_0398 0.57 -1.1
423,823 + Echvi_0398 0.57 -0.4
424,056 + Echvi_0398 0.67 +1.1
424,058 + Echvi_0398 0.67 -0.4
424,058 + Echvi_0398 0.67 -0.6
424,059 - Echvi_0398 0.67 +0.7
424,059 - Echvi_0398 0.67 +0.9
424,059 - Echvi_0398 0.67 -0.1
424,078 - Echvi_0398 0.68 +0.9
424,078 - Echvi_0398 0.68 +0.6
424,079 + Echvi_0398 0.68 +2.7
424,177 + Echvi_0398 0.72 -1.0
424,177 + Echvi_0398 0.72 -0.9
424,249 + Echvi_0398 0.75 -0.9
424,249 + Echvi_0398 0.75 -0.6
424,249 + Echvi_0398 0.75 -1.6
424,249 + Echvi_0398 0.75 +0.8
424,251 + Echvi_0398 0.75 -0.1
424,305 - Echvi_0398 0.78 -0.7
424,308 - Echvi_0398 0.78 -1.2
424,308 - Echvi_0398 0.78 -0.5
424,308 - Echvi_0398 0.78 -0.9
424,479 - Echvi_0398 0.85 -0.4
424,482 - Echvi_0398 0.85 -0.8
424,514 - Echvi_0398 0.87 +0.6
424,684 + -0.1
424,684 + +0.8
424,685 - -1.3
424,685 - -0.4
424,685 - -0.4
424,699 + +2.0
424,700 - +0.1
424,700 - +1.7
424,702 - -0.9
424,741 - -2.1
424,741 - +0.6
424,749 + -0.3
424,763 - -0.4
424,764 + +0.2
424,764 + -0.5
424,804 - +0.0
424,807 - +0.6
424,807 - -1.0
424,807 - -0.0
424,807 - -0.4
424,832 + -0.4
424,836 + +1.2
424,843 + -0.9
424,862 + -2.1
424,862 + +2.0
424,862 + -0.1
424,862 + +1.4
424,862 + -0.2
425,012 + +0.5
425,041 + +0.1
425,041 + +2.5
425,051 + +0.6
425,051 + +0.1
425,186 + Echvi_0399 0.10 -1.3
425,186 + Echvi_0399 0.10 +0.1
425,186 + Echvi_0399 0.10 +2.5
425,186 + Echvi_0399 0.10 +0.0
425,186 + Echvi_0399 0.10 +0.4
425,186 + Echvi_0399 0.10 +1.1
425,186 + Echvi_0399 0.10 -0.5
425,186 + Echvi_0399 0.10 -1.2
425,187 - Echvi_0399 0.10 -0.1
425,187 - Echvi_0399 0.10 +0.2
425,187 - Echvi_0399 0.10 -0.5
425,187 - Echvi_0399 0.10 -0.6
425,188 + Echvi_0399 0.10 +0.3
425,188 + Echvi_0399 0.10 -0.8
425,189 - Echvi_0399 0.10 -0.5
425,195 + Echvi_0399 0.11 -1.5
425,195 + Echvi_0399 0.11 -0.5
425,196 - Echvi_0399 0.11 +1.1
425,196 - Echvi_0399 0.11 -1.7
425,198 + Echvi_0399 0.12 -0.0
425,199 - Echvi_0399 0.12 +0.8
425,199 - Echvi_0399 0.12 -1.0
425,199 - Echvi_0399 0.12 -0.4
425,367 + Echvi_0399 0.35 -1.0
425,367 + Echvi_0399 0.35 -0.6
425,524 + Echvi_0399 0.58 +2.0
425,588 + Echvi_0399 0.67 +1.8
425,589 - Echvi_0399 0.67 +0.2
425,596 - Echvi_0399 0.68 -2.0
425,600 + Echvi_0399 0.68 +0.0
425,601 - Echvi_0399 0.68 +0.4
425,601 - Echvi_0399 0.68 -0.6
425,603 + Echvi_0399 0.69 +1.1
425,608 + Echvi_0399 0.69 -0.9
425,738 - Echvi_0399 0.88 -0.6
425,738 - Echvi_0399 0.88 -0.3
425,747 + Echvi_0399 0.89 +1.4

Or see this region's nucleotide sequence