Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0386 and Echvi_0387 are separated by 16 nucleotides Echvi_0387 and Echvi_0388 are separated by 577 nucleotides Echvi_0388 and Echvi_0389 are separated by 115 nucleotides Echvi_0389 and Echvi_0390 are separated by 185 nucleotides
Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768
_0386
Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171
_0387
Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171
_0388
Echvi_0389: Echvi_0389 - hypothetical protein, at 415,287 to 415,751
_0389
Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112
_0390
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 413.768 kb on + strand at 413.768 kb on + strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.780 kb on + strand at 413.781 kb on - strand at 413.781 kb on - strand at 413.793 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.821 kb on - strand at 413.857 kb on + strand, within Echvi_0387 at 413.949 kb on + strand, within Echvi_0387 at 413.972 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.035 kb on + strand, within Echvi_0387 at 414.081 kb on + strand, within Echvi_0387 at 414.082 kb on - strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.121 kb on + strand, within Echvi_0387 at 414.172 kb on - strand at 414.172 kb on - strand at 414.175 kb on + strand at 414.176 kb on - strand at 414.176 kb on - strand at 414.182 kb on + strand at 414.182 kb on + strand at 414.183 kb on - strand at 414.187 kb on - strand at 414.193 kb on - strand at 414.193 kb on - strand at 414.204 kb on + strand at 414.204 kb on + strand at 414.233 kb on + strand at 414.233 kb on + strand at 414.234 kb on - strand at 414.237 kb on + strand at 414.246 kb on - strand at 414.246 kb on - strand at 414.247 kb on + strand at 414.314 kb on + strand at 414.314 kb on + strand at 414.315 kb on - strand at 414.320 kb on + strand at 414.320 kb on + strand at 414.321 kb on - strand at 414.321 kb on - strand at 414.460 kb on + strand at 414.479 kb on - strand at 414.499 kb on + strand at 414.512 kb on + strand at 414.520 kb on + strand at 414.520 kb on + strand at 414.523 kb on + strand at 414.551 kb on + strand at 414.552 kb on - strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.574 kb on - strand at 414.588 kb on + strand at 414.588 kb on + strand at 414.601 kb on - strand at 414.603 kb on + strand at 414.634 kb on - strand at 414.640 kb on - strand at 414.653 kb on - strand at 414.669 kb on - strand at 414.880 kb on - strand, within Echvi_0388 at 414.882 kb on + strand, within Echvi_0388 at 414.900 kb on + strand, within Echvi_0388 at 414.911 kb on - strand, within Echvi_0388 at 414.941 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 415.006 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.147 kb on - strand at 415.166 kb on - strand at 415.186 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.191 kb on - strand at 415.191 kb on - strand at 415.259 kb on + strand at 415.260 kb on - strand at 415.269 kb on - strand at 415.280 kb on + strand at 415.280 kb on + strand at 415.316 kb on - strand at 415.335 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.357 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.430 kb on - strand, within Echvi_0389 at 415.447 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.555 kb on - strand, within Echvi_0389 at 415.560 kb on - strand, within Echvi_0389 at 415.652 kb on - strand, within Echvi_0389 at 415.665 kb on - strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.675 kb on - strand, within Echvi_0389 at 415.691 kb on + strand, within Echvi_0389 at 415.692 kb on - strand, within Echvi_0389 at 415.750 kb on - strand at 415.754 kb on + strand at 415.755 kb on - strand at 415.804 kb on + strand at 415.804 kb on + strand at 415.805 kb on - strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.817 kb on + strand at 415.817 kb on + strand at 415.818 kb on - strand at 415.818 kb on - strand at 415.825 kb on + strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.837 kb on + strand at 415.896 kb on - strand at 415.905 kb on - strand at 415.905 kb on - strand at 415.913 kb on - strand at 415.948 kb on + strand at 415.948 kb on + strand at 415.949 kb on - strand at 415.991 kb on + strand at 416.035 kb on + strand at 416.045 kb on - strand at 416.065 kb on + strand, within Echvi_0390 at 416.065 kb on + strand, within Echvi_0390 at 416.071 kb on - strand, within Echvi_0390 at 416.109 kb on - strand, within Echvi_0390 at 416.165 kb on + strand, within Echvi_0390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 413,768 + +0.0 413,768 + +0.3 413,769 - +1.2 413,769 - +0.7 413,769 - +1.5 413,780 + -2.3 413,781 - -0.5 413,781 - +0.3 413,793 + +1.0 413,820 + -1.2 413,820 + -0.3 413,820 + -0.5 413,820 + -1.4 413,820 + -0.2 413,821 - +0.3 413,857 + Echvi_0387 0.19 +2.1 413,949 + Echvi_0387 0.42 +1.0 413,972 + Echvi_0387 0.48 -0.2 414,026 + Echvi_0387 0.62 +1.2 414,026 + Echvi_0387 0.62 -1.0 414,027 - Echvi_0387 0.63 -0.1 414,027 - Echvi_0387 0.63 +1.0 414,027 - Echvi_0387 0.63 -0.3 414,027 - Echvi_0387 0.63 +1.1 414,035 + Echvi_0387 0.65 +1.0 414,081 + Echvi_0387 0.76 +0.3 414,082 - Echvi_0387 0.77 +0.8 414,111 + Echvi_0387 0.84 +0.7 414,111 + Echvi_0387 0.84 -0.8 414,111 + Echvi_0387 0.84 -0.4 414,112 - Echvi_0387 0.84 +0.4 414,112 - Echvi_0387 0.84 +1.4 414,114 + Echvi_0387 0.85 +0.6 414,114 + Echvi_0387 0.85 -0.2 414,115 - Echvi_0387 0.85 +1.0 414,115 - Echvi_0387 0.85 -0.5 414,115 - Echvi_0387 0.85 -0.6 414,115 - Echvi_0387 0.85 -0.3 414,115 - Echvi_0387 0.85 -0.3 414,115 - Echvi_0387 0.85 +0.0 414,121 + Echvi_0387 0.87 -0.9 414,172 - +2.0 414,172 - -1.0 414,175 + +1.2 414,176 - -0.4 414,176 - +0.4 414,182 + -0.1 414,182 + +0.3 414,183 - -0.0 414,187 - +0.8 414,193 - +0.1 414,193 - +0.5 414,204 + -0.0 414,204 + +1.2 414,233 + -1.8 414,233 + +0.4 414,234 - -1.0 414,237 + -0.3 414,246 - +1.1 414,246 - +0.3 414,247 + +2.3 414,314 + +0.8 414,314 + +0.2 414,315 - +1.3 414,320 + +0.2 414,320 + +0.6 414,321 - -0.1 414,321 - +1.1 414,460 + +0.2 414,479 - +0.1 414,499 + +1.0 414,512 + -1.1 414,520 + +0.3 414,520 + -0.0 414,523 + -0.5 414,551 + -0.9 414,552 - +0.5 414,567 + +0.5 414,567 + +0.1 414,567 + +0.6 414,567 + +0.2 414,567 + -0.2 414,574 - +1.2 414,588 + -1.2 414,588 + +3.3 414,601 - +2.3 414,603 + -0.9 414,634 - +2.2 414,640 - +1.2 414,653 - +0.2 414,669 - +0.8 414,880 - Echvi_0388 0.31 +1.0 414,882 + Echvi_0388 0.31 -1.3 414,900 + Echvi_0388 0.36 -3.3 414,911 - Echvi_0388 0.38 +0.6 414,941 - Echvi_0388 0.45 -1.0 414,992 - Echvi_0388 0.57 -1.0 414,992 - Echvi_0388 0.57 +1.2 414,992 - Echvi_0388 0.57 +1.8 414,992 - Echvi_0388 0.57 -1.3 415,006 + Echvi_0388 0.61 +0.2 415,048 + Echvi_0388 0.71 +0.5 415,048 + Echvi_0388 0.71 -0.4 415,049 - Echvi_0388 0.71 +1.1 415,049 - Echvi_0388 0.71 -0.4 415,049 - Echvi_0388 0.71 +1.0 415,147 - +1.8 415,166 - +0.5 415,186 + +0.8 415,190 + -0.4 415,190 + -0.1 415,190 + -0.5 415,191 - +0.3 415,191 - -1.6 415,259 + -0.8 415,260 - +0.2 415,269 - -1.8 415,280 + +1.1 415,280 + -0.0 415,316 - -0.3 415,335 + Echvi_0389 0.10 +0.3 415,356 + Echvi_0389 0.15 +0.5 415,356 + Echvi_0389 0.15 -0.3 415,357 - Echvi_0389 0.15 +1.7 415,385 - Echvi_0389 0.21 +1.5 415,385 - Echvi_0389 0.21 +0.8 415,411 + Echvi_0389 0.27 -0.2 415,411 + Echvi_0389 0.27 -0.6 415,411 + Echvi_0389 0.27 +1.2 415,411 + Echvi_0389 0.27 -0.4 415,412 - Echvi_0389 0.27 -0.0 415,412 - Echvi_0389 0.27 +0.1 415,412 - Echvi_0389 0.27 -0.5 415,430 - Echvi_0389 0.31 +0.1 415,447 + Echvi_0389 0.34 +0.7 415,468 + Echvi_0389 0.39 +1.2 415,468 + Echvi_0389 0.39 +0.9 415,469 - Echvi_0389 0.39 -1.0 415,469 - Echvi_0389 0.39 -2.2 415,469 - Echvi_0389 0.39 +1.5 415,481 + Echvi_0389 0.42 +1.2 415,481 + Echvi_0389 0.42 +1.4 415,481 + Echvi_0389 0.42 +1.0 415,482 - Echvi_0389 0.42 -2.4 415,482 - Echvi_0389 0.42 +1.3 415,555 - Echvi_0389 0.58 +1.0 415,560 - Echvi_0389 0.59 -0.0 415,652 - Echvi_0389 0.78 -0.4 415,665 - Echvi_0389 0.81 -1.2 415,670 + Echvi_0389 0.82 -0.2 415,670 + Echvi_0389 0.82 -0.0 415,670 + Echvi_0389 0.82 -0.8 415,670 + Echvi_0389 0.82 -1.4 415,670 + Echvi_0389 0.82 -2.4 415,670 + Echvi_0389 0.82 -0.8 415,670 + Echvi_0389 0.82 +0.1 415,670 + Echvi_0389 0.82 +1.3 415,670 + Echvi_0389 0.82 -0.4 415,670 + Echvi_0389 0.82 +0.5 415,670 + Echvi_0389 0.82 -1.0 415,670 + Echvi_0389 0.82 -0.2 415,671 - Echvi_0389 0.83 +0.8 415,671 - Echvi_0389 0.83 +0.1 415,671 - Echvi_0389 0.83 -0.8 415,671 - Echvi_0389 0.83 +1.0 415,671 - Echvi_0389 0.83 -0.7 415,671 - Echvi_0389 0.83 +0.6 415,671 - Echvi_0389 0.83 +0.3 415,671 - Echvi_0389 0.83 -0.2 415,671 - Echvi_0389 0.83 -0.4 415,671 - Echvi_0389 0.83 -0.4 415,671 - Echvi_0389 0.83 +2.2 415,671 - Echvi_0389 0.83 +0.4 415,674 + Echvi_0389 0.83 -1.0 415,674 + Echvi_0389 0.83 +2.0 415,674 + Echvi_0389 0.83 +0.9 415,675 - Echvi_0389 0.83 -0.9 415,691 + Echvi_0389 0.87 -0.7 415,692 - Echvi_0389 0.87 -1.6 415,750 - -0.4 415,754 + +0.3 415,755 - +0.2 415,804 + -0.3 415,804 + -0.3 415,805 - +0.7 415,815 + +0.0 415,815 + +2.4 415,815 + +0.3 415,817 + -0.8 415,817 + +0.2 415,818 - +0.1 415,818 - +2.7 415,825 + +0.1 415,826 - -0.7 415,826 - +0.2 415,826 - -0.4 415,837 + -0.3 415,896 - -1.5 415,905 - -2.3 415,905 - -0.4 415,913 - -0.4 415,948 + +1.3 415,948 + +0.4 415,949 - -1.2 415,991 + -0.3 416,035 + +1.4 416,045 - +0.4 416,065 + Echvi_0390 0.11 -2.4 416,065 + Echvi_0390 0.11 +2.2 416,071 - Echvi_0390 0.11 -3.1 416,109 - Echvi_0390 0.15 -0.2 416,165 + Echvi_0390 0.19 -0.4
Or see this region's nucleotide sequence