Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0381

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0379 and Echvi_0380 are separated by 71 nucleotidesEchvi_0380 and Echvi_0381 overlap by 1 nucleotidesEchvi_0381 and Echvi_0382 overlap by 4 nucleotides Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087 _0379 Echvi_0380: Echvi_0380 - hypothetical protein, at 406,159 to 406,518 _0380 Echvi_0381: Echvi_0381 - Restriction endonuclease S subunits, at 406,518 to 407,846 _0381 Echvi_0382: Echvi_0382 - Type I restriction-modification system methyltransferase subunit, at 407,843 to 409,279 _0382 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 406.200 kb on + strand, within Echvi_0380at 406.215 kb on + strand, within Echvi_0380at 406.220 kb on + strand, within Echvi_0380at 406.262 kb on + strand, within Echvi_0380at 406.263 kb on - strand, within Echvi_0380at 406.277 kb on + strand, within Echvi_0380at 406.278 kb on - strand, within Echvi_0380at 406.289 kb on - strand, within Echvi_0380at 406.295 kb on - strand, within Echvi_0380at 406.368 kb on + strand, within Echvi_0380at 406.393 kb on - strand, within Echvi_0380at 406.415 kb on - strand, within Echvi_0380at 406.417 kb on - strand, within Echvi_0380at 406.427 kb on + strand, within Echvi_0380at 406.428 kb on - strand, within Echvi_0380at 406.428 kb on - strand, within Echvi_0380at 406.472 kb on + strand, within Echvi_0380at 406.479 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.604 kb on + strandat 406.604 kb on + strandat 406.605 kb on - strandat 406.627 kb on + strandat 406.641 kb on - strandat 406.645 kb on - strandat 406.645 kb on - strandat 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.904 kb on + strand, within Echvi_0381at 406.905 kb on - strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.962 kb on + strand, within Echvi_0381at 406.963 kb on - strand, within Echvi_0381at 406.986 kb on - strand, within Echvi_0381at 406.989 kb on + strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.993 kb on - strand, within Echvi_0381at 407.074 kb on + strand, within Echvi_0381at 407.082 kb on - strand, within Echvi_0381at 407.103 kb on - strand, within Echvi_0381at 407.129 kb on + strand, within Echvi_0381at 407.165 kb on + strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.391 kb on - strand, within Echvi_0381at 407.425 kb on - strand, within Echvi_0381at 407.481 kb on + strand, within Echvi_0381at 407.482 kb on - strand, within Echvi_0381at 407.510 kb on + strand, within Echvi_0381at 407.541 kb on + strand, within Echvi_0381at 407.542 kb on - strand, within Echvi_0381at 407.573 kb on + strand, within Echvi_0381at 407.574 kb on - strand, within Echvi_0381at 407.641 kb on - strand, within Echvi_0381at 407.693 kb on + strand, within Echvi_0381at 407.724 kb on - strandat 407.748 kb on + strandat 407.748 kb on + strandat 407.765 kb on + strandat 407.765 kb on + strandat 407.824 kb on - strandat 407.849 kb on + strandat 407.862 kb on - strandat 407.863 kb on + strandat 407.863 kb on + strandat 407.863 kb on + strandat 407.864 kb on - strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.871 kb on - strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.916 kb on - strandat 407.972 kb on + strandat 407.972 kb on + strandat 407.973 kb on - strandat 407.992 kb on + strand, within Echvi_0382at 407.992 kb on + strand, within Echvi_0382at 407.993 kb on - strand, within Echvi_0382at 408.074 kb on + strand, within Echvi_0382at 408.075 kb on - strand, within Echvi_0382at 408.094 kb on + strand, within Echvi_0382at 408.098 kb on - strand, within Echvi_0382at 408.099 kb on + strand, within Echvi_0382at 408.099 kb on + strand, within Echvi_0382at 408.100 kb on - strand, within Echvi_0382at 408.100 kb on - strand, within Echvi_0382at 408.132 kb on + strand, within Echvi_0382at 408.132 kb on + strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.136 kb on - strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.141 kb on - strand, within Echvi_0382at 408.141 kb on - strand, within Echvi_0382at 408.193 kb on + strand, within Echvi_0382at 408.193 kb on + strand, within Echvi_0382at 408.198 kb on + strand, within Echvi_0382at 408.198 kb on + strand, within Echvi_0382at 408.245 kb on - strand, within Echvi_0382at 408.269 kb on + strand, within Echvi_0382at 408.270 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.344 kb on + strand, within Echvi_0382at 408.345 kb on - strand, within Echvi_0382at 408.421 kb on + strand, within Echvi_0382at 408.422 kb on - strand, within Echvi_0382at 408.486 kb on + strand, within Echvi_0382at 408.487 kb on - strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.576 kb on + strand, within Echvi_0382at 408.591 kb on + strand, within Echvi_0382at 408.592 kb on - strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.635 kb on + strand, within Echvi_0382at 408.636 kb on - strand, within Echvi_0382at 408.641 kb on - strand, within Echvi_0382at 408.668 kb on - strand, within Echvi_0382at 408.681 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.775 kb on - strand, within Echvi_0382

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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406,200 + Echvi_0380 0.11 -1.0
406,215 + Echvi_0380 0.16 -0.9
406,220 + Echvi_0380 0.17 +0.6
406,262 + Echvi_0380 0.29 +0.8
406,263 - Echvi_0380 0.29 -1.3
406,277 + Echvi_0380 0.33 +1.5
406,278 - Echvi_0380 0.33 +1.6
406,289 - Echvi_0380 0.36 +1.5
406,295 - Echvi_0380 0.38 -0.0
406,368 + Echvi_0380 0.58 +0.8
406,393 - Echvi_0380 0.65 -0.3
406,415 - Echvi_0380 0.71 -0.3
406,417 - Echvi_0380 0.72 -0.8
406,427 + Echvi_0380 0.74 -1.9
406,428 - Echvi_0380 0.75 -0.1
406,428 - Echvi_0380 0.75 +0.1
406,472 + Echvi_0380 0.87 +3.3
406,479 + Echvi_0380 0.89 -0.6
406,481 + Echvi_0380 0.89 +0.4
406,481 + Echvi_0380 0.89 +0.7
406,481 + Echvi_0380 0.89 +1.0
406,604 + -1.7
406,604 + +0.0
406,605 - -0.0
406,627 + -0.6
406,641 - -0.8
406,645 - -1.0
406,645 - -3.5
406,695 + Echvi_0381 0.13 -2.9
406,695 + Echvi_0381 0.13 -0.6
406,695 + Echvi_0381 0.13 +0.4
406,695 + Echvi_0381 0.13 +0.6
406,696 - Echvi_0381 0.13 +1.5
406,696 - Echvi_0381 0.13 -0.0
406,696 - Echvi_0381 0.13 -0.6
406,696 - Echvi_0381 0.13 +0.2
406,860 + Echvi_0381 0.26 -2.0
406,860 + Echvi_0381 0.26 +0.2
406,860 + Echvi_0381 0.26 -0.4
406,860 + Echvi_0381 0.26 +0.4
406,860 + Echvi_0381 0.26 -0.6
406,904 + Echvi_0381 0.29 +0.4
406,905 - Echvi_0381 0.29 -1.2
406,916 + Echvi_0381 0.30 +0.1
406,916 + Echvi_0381 0.30 -0.5
406,916 + Echvi_0381 0.30 -0.9
406,962 + Echvi_0381 0.33 -0.5
406,963 - Echvi_0381 0.33 -1.0
406,986 - Echvi_0381 0.35 -0.5
406,989 + Echvi_0381 0.35 -0.1
406,990 - Echvi_0381 0.36 -0.1
406,990 - Echvi_0381 0.36 -2.2
406,993 - Echvi_0381 0.36 +0.5
407,074 + Echvi_0381 0.42 +0.1
407,082 - Echvi_0381 0.42 -2.3
407,103 - Echvi_0381 0.44 -2.9
407,129 + Echvi_0381 0.46 -0.1
407,165 + Echvi_0381 0.49 -0.4
407,301 - Echvi_0381 0.59 -0.2
407,301 - Echvi_0381 0.59 +0.7
407,301 - Echvi_0381 0.59 -1.0
407,391 - Echvi_0381 0.66 -0.4
407,425 - Echvi_0381 0.68 -2.1
407,481 + Echvi_0381 0.72 +0.4
407,482 - Echvi_0381 0.73 -0.8
407,510 + Echvi_0381 0.75 -1.8
407,541 + Echvi_0381 0.77 -1.0
407,542 - Echvi_0381 0.77 -0.7
407,573 + Echvi_0381 0.79 +0.6
407,574 - Echvi_0381 0.79 +1.0
407,641 - Echvi_0381 0.84 -1.8
407,693 + Echvi_0381 0.88 -1.2
407,724 - -0.4
407,748 + +0.5
407,748 + +0.5
407,765 + -1.0
407,765 + -0.9
407,824 - -1.4
407,849 + -0.5
407,862 - -0.9
407,863 + +0.5
407,863 + -1.7
407,863 + +0.8
407,864 - -1.7
407,870 + +2.0
407,870 + +0.4
407,870 + -1.7
407,870 + -1.9
407,870 + +0.3
407,870 + -0.5
407,871 - -1.2
407,873 + -2.0
407,873 + -0.0
407,873 + -0.2
407,873 + -0.5
407,873 + +0.5
407,873 + -1.0
407,874 - -0.2
407,874 - -1.1
407,874 - -0.4
407,916 - +0.2
407,972 + -0.3
407,972 + +2.0
407,973 - -1.0
407,992 + Echvi_0382 0.10 -1.7
407,992 + Echvi_0382 0.10 +1.0
407,993 - Echvi_0382 0.10 -0.3
408,074 + Echvi_0382 0.16 -0.3
408,075 - Echvi_0382 0.16 -0.4
408,094 + Echvi_0382 0.17 -1.8
408,098 - Echvi_0382 0.18 -2.1
408,099 + Echvi_0382 0.18 -0.1
408,099 + Echvi_0382 0.18 +0.2
408,100 - Echvi_0382 0.18 -0.4
408,100 - Echvi_0382 0.18 +1.4
408,132 + Echvi_0382 0.20 -0.0
408,132 + Echvi_0382 0.20 -2.4
408,133 - Echvi_0382 0.20 -0.0
408,133 - Echvi_0382 0.20 -0.2
408,133 - Echvi_0382 0.20 -1.7
408,135 + Echvi_0382 0.20 -0.5
408,135 + Echvi_0382 0.20 -1.3
408,135 + Echvi_0382 0.20 -1.7
408,136 - Echvi_0382 0.20 -0.4
408,140 + Echvi_0382 0.21 +0.8
408,140 + Echvi_0382 0.21 -0.6
408,140 + Echvi_0382 0.21 -1.4
408,141 - Echvi_0382 0.21 -2.1
408,141 - Echvi_0382 0.21 +0.5
408,193 + Echvi_0382 0.24 +0.1
408,193 + Echvi_0382 0.24 -0.6
408,198 + Echvi_0382 0.25 -0.2
408,198 + Echvi_0382 0.25 -1.2
408,245 - Echvi_0382 0.28 -1.5
408,269 + Echvi_0382 0.30 -3.7
408,270 - Echvi_0382 0.30 -0.1
408,329 - Echvi_0382 0.34 +1.5
408,329 - Echvi_0382 0.34 -0.7
408,344 + Echvi_0382 0.35 -0.9
408,345 - Echvi_0382 0.35 +0.3
408,421 + Echvi_0382 0.40 +0.4
408,422 - Echvi_0382 0.40 -2.9
408,486 + Echvi_0382 0.45 +0.0
408,487 - Echvi_0382 0.45 -2.5
408,541 + Echvi_0382 0.49 -1.0
408,541 + Echvi_0382 0.49 -0.4
408,541 + Echvi_0382 0.49 -0.5
408,576 + Echvi_0382 0.51 -1.8
408,591 + Echvi_0382 0.52 -0.8
408,592 - Echvi_0382 0.52 +0.4
408,617 + Echvi_0382 0.54 -0.4
408,617 + Echvi_0382 0.54 -0.4
408,619 + Echvi_0382 0.54 +3.0
408,619 + Echvi_0382 0.54 -0.2
408,620 - Echvi_0382 0.54 -0.6
408,620 - Echvi_0382 0.54 +2.0
408,620 - Echvi_0382 0.54 -0.8
408,620 - Echvi_0382 0.54 -2.6
408,635 + Echvi_0382 0.55 +0.2
408,636 - Echvi_0382 0.55 -0.8
408,641 - Echvi_0382 0.56 -0.9
408,668 - Echvi_0382 0.57 +0.4
408,681 + Echvi_0382 0.58 -1.2
408,700 + Echvi_0382 0.60 +2.2
408,700 + Echvi_0382 0.60 +0.3
408,700 + Echvi_0382 0.60 -0.6
408,700 + Echvi_0382 0.60 -1.1
408,775 - Echvi_0382 0.65 -1.4

Or see this region's nucleotide sequence