Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0379 and Echvi_0380 are separated by 71 nucleotides Echvi_0380 and Echvi_0381 overlap by 1 nucleotides
Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087
_0379
Echvi_0380: Echvi_0380 - hypothetical protein, at 406,159 to 406,518
_0380
Echvi_0381: Echvi_0381 - Restriction endonuclease S subunits, at 406,518 to 407,846
_0381
Position (kb) 406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 406.200 kb on + strand, within Echvi_0380 at 406.215 kb on + strand, within Echvi_0380 at 406.220 kb on + strand, within Echvi_0380 at 406.262 kb on + strand, within Echvi_0380 at 406.263 kb on - strand, within Echvi_0380 at 406.277 kb on + strand, within Echvi_0380 at 406.278 kb on - strand, within Echvi_0380 at 406.289 kb on - strand, within Echvi_0380 at 406.295 kb on - strand, within Echvi_0380 at 406.368 kb on + strand, within Echvi_0380 at 406.393 kb on - strand, within Echvi_0380 at 406.415 kb on - strand, within Echvi_0380 at 406.417 kb on - strand, within Echvi_0380 at 406.427 kb on + strand, within Echvi_0380 at 406.428 kb on - strand, within Echvi_0380 at 406.428 kb on - strand, within Echvi_0380 at 406.472 kb on + strand, within Echvi_0380 at 406.479 kb on + strand, within Echvi_0380 at 406.481 kb on + strand, within Echvi_0380 at 406.481 kb on + strand, within Echvi_0380 at 406.481 kb on + strand, within Echvi_0380 at 406.604 kb on + strand at 406.604 kb on + strand at 406.605 kb on - strand at 406.627 kb on + strand at 406.641 kb on - strand at 406.645 kb on - strand at 406.645 kb on - strand at 406.695 kb on + strand, within Echvi_0381 at 406.695 kb on + strand, within Echvi_0381 at 406.695 kb on + strand, within Echvi_0381 at 406.695 kb on + strand, within Echvi_0381 at 406.696 kb on - strand, within Echvi_0381 at 406.696 kb on - strand, within Echvi_0381 at 406.696 kb on - strand, within Echvi_0381 at 406.696 kb on - strand, within Echvi_0381 at 406.860 kb on + strand, within Echvi_0381 at 406.860 kb on + strand, within Echvi_0381 at 406.860 kb on + strand, within Echvi_0381 at 406.860 kb on + strand, within Echvi_0381 at 406.860 kb on + strand, within Echvi_0381 at 406.904 kb on + strand, within Echvi_0381 at 406.905 kb on - strand, within Echvi_0381 at 406.916 kb on + strand, within Echvi_0381 at 406.916 kb on + strand, within Echvi_0381 at 406.916 kb on + strand, within Echvi_0381 at 406.962 kb on + strand, within Echvi_0381 at 406.963 kb on - strand, within Echvi_0381 at 406.986 kb on - strand, within Echvi_0381 at 406.989 kb on + strand, within Echvi_0381 at 406.990 kb on - strand, within Echvi_0381 at 406.990 kb on - strand, within Echvi_0381 at 406.993 kb on - strand, within Echvi_0381 at 407.074 kb on + strand, within Echvi_0381 at 407.082 kb on - strand, within Echvi_0381 at 407.103 kb on - strand, within Echvi_0381 at 407.129 kb on + strand, within Echvi_0381 at 407.165 kb on + strand, within Echvi_0381 at 407.301 kb on - strand, within Echvi_0381 at 407.301 kb on - strand, within Echvi_0381 at 407.301 kb on - strand, within Echvi_0381 at 407.391 kb on - strand, within Echvi_0381 at 407.425 kb on - strand, within Echvi_0381 at 407.481 kb on + strand, within Echvi_0381 at 407.482 kb on - strand, within Echvi_0381 at 407.510 kb on + strand, within Echvi_0381
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 406,200 + Echvi_0380 0.11 -1.0 406,215 + Echvi_0380 0.16 -0.9 406,220 + Echvi_0380 0.17 +0.6 406,262 + Echvi_0380 0.29 +0.8 406,263 - Echvi_0380 0.29 -1.3 406,277 + Echvi_0380 0.33 +1.5 406,278 - Echvi_0380 0.33 +1.6 406,289 - Echvi_0380 0.36 +1.5 406,295 - Echvi_0380 0.38 -0.0 406,368 + Echvi_0380 0.58 +0.8 406,393 - Echvi_0380 0.65 -0.3 406,415 - Echvi_0380 0.71 -0.3 406,417 - Echvi_0380 0.72 -0.8 406,427 + Echvi_0380 0.74 -1.9 406,428 - Echvi_0380 0.75 -0.1 406,428 - Echvi_0380 0.75 +0.1 406,472 + Echvi_0380 0.87 +3.3 406,479 + Echvi_0380 0.89 -0.6 406,481 + Echvi_0380 0.89 +0.4 406,481 + Echvi_0380 0.89 +0.7 406,481 + Echvi_0380 0.89 +1.0 406,604 + -1.7 406,604 + +0.0 406,605 - -0.0 406,627 + -0.6 406,641 - -0.8 406,645 - -1.0 406,645 - -3.5 406,695 + Echvi_0381 0.13 -2.9 406,695 + Echvi_0381 0.13 -0.6 406,695 + Echvi_0381 0.13 +0.4 406,695 + Echvi_0381 0.13 +0.6 406,696 - Echvi_0381 0.13 +1.5 406,696 - Echvi_0381 0.13 -0.0 406,696 - Echvi_0381 0.13 -0.6 406,696 - Echvi_0381 0.13 +0.2 406,860 + Echvi_0381 0.26 -2.0 406,860 + Echvi_0381 0.26 +0.2 406,860 + Echvi_0381 0.26 -0.4 406,860 + Echvi_0381 0.26 +0.4 406,860 + Echvi_0381 0.26 -0.6 406,904 + Echvi_0381 0.29 +0.4 406,905 - Echvi_0381 0.29 -1.2 406,916 + Echvi_0381 0.30 +0.1 406,916 + Echvi_0381 0.30 -0.5 406,916 + Echvi_0381 0.30 -0.9 406,962 + Echvi_0381 0.33 -0.5 406,963 - Echvi_0381 0.33 -1.0 406,986 - Echvi_0381 0.35 -0.5 406,989 + Echvi_0381 0.35 -0.1 406,990 - Echvi_0381 0.36 -0.1 406,990 - Echvi_0381 0.36 -2.2 406,993 - Echvi_0381 0.36 +0.5 407,074 + Echvi_0381 0.42 +0.1 407,082 - Echvi_0381 0.42 -2.3 407,103 - Echvi_0381 0.44 -2.9 407,129 + Echvi_0381 0.46 -0.1 407,165 + Echvi_0381 0.49 -0.4 407,301 - Echvi_0381 0.59 -0.2 407,301 - Echvi_0381 0.59 +0.7 407,301 - Echvi_0381 0.59 -1.0 407,391 - Echvi_0381 0.66 -0.4 407,425 - Echvi_0381 0.68 -2.1 407,481 + Echvi_0381 0.72 +0.4 407,482 - Echvi_0381 0.73 -0.8 407,510 + Echvi_0381 0.75 -1.8
Or see this region's nucleotide sequence