Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0366

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0365 and Echvi_0366 are separated by 160 nucleotidesEchvi_0366 and Echvi_0367 are separated by 59 nucleotides Echvi_0365: Echvi_0365 - adenylosuccinate lyase, at 392,547 to 393,890 _0365 Echvi_0366: Echvi_0366 - Uncharacterized protein conserved in bacteria containing a pentein-type domain, at 394,051 to 394,995 _0366 Echvi_0367: Echvi_0367 - hypothetical protein, at 395,055 to 395,969 _0367 Position (kb) 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 393.896 kb on - strandat 393.923 kb on + strandat 393.923 kb on + strandat 393.923 kb on + strandat 393.923 kb on + strandat 393.924 kb on - strandat 393.930 kb on + strandat 393.930 kb on + strandat 394.029 kb on + strandat 394.104 kb on + strandat 394.135 kb on - strandat 394.161 kb on + strand, within Echvi_0366at 394.162 kb on - strand, within Echvi_0366at 394.163 kb on + strand, within Echvi_0366at 394.195 kb on - strand, within Echvi_0366at 394.206 kb on - strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.264 kb on - strand, within Echvi_0366at 394.264 kb on - strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.542 kb on - strand, within Echvi_0366at 394.618 kb on - strand, within Echvi_0366at 394.642 kb on - strand, within Echvi_0366at 394.660 kb on + strand, within Echvi_0366at 394.661 kb on - strand, within Echvi_0366at 394.661 kb on - strand, within Echvi_0366at 394.666 kb on + strand, within Echvi_0366at 394.720 kb on + strand, within Echvi_0366at 394.911 kb on - strandat 394.911 kb on - strandat 394.914 kb on + strandat 394.915 kb on - strandat 394.915 kb on - strandat 394.939 kb on - strandat 394.967 kb on - strandat 394.974 kb on + strandat 394.975 kb on - strandat 395.030 kb on - strandat 395.065 kb on + strandat 395.069 kb on - strandat 395.108 kb on + strandat 395.173 kb on + strand, within Echvi_0367at 395.174 kb on - strand, within Echvi_0367at 395.242 kb on + strand, within Echvi_0367at 395.267 kb on + strand, within Echvi_0367at 395.292 kb on - strand, within Echvi_0367at 395.328 kb on + strand, within Echvi_0367at 395.338 kb on - strand, within Echvi_0367at 395.359 kb on - strand, within Echvi_0367at 395.381 kb on - strand, within Echvi_0367at 395.388 kb on - strand, within Echvi_0367at 395.406 kb on - strand, within Echvi_0367at 395.414 kb on + strand, within Echvi_0367at 395.415 kb on - strand, within Echvi_0367at 395.416 kb on + strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.502 kb on + strandat 395.563 kb on + strand, within Echvi_0367at 395.576 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.597 kb on - strand, within Echvi_0367at 395.597 kb on - strand, within Echvi_0367at 395.602 kb on + strand, within Echvi_0367at 395.640 kb on - strand, within Echvi_0367at 395.659 kb on + strand, within Echvi_0367at 395.659 kb on + strand, within Echvi_0367at 395.660 kb on - strand, within Echvi_0367at 395.660 kb on - strand, within Echvi_0367at 395.712 kb on - strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.714 kb on - strand, within Echvi_0367at 395.750 kb on - strand, within Echvi_0367at 395.759 kb on + strand, within Echvi_0367at 395.759 kb on + strand, within Echvi_0367at 395.760 kb on - strand, within Echvi_0367at 395.891 kb on - strandat 395.891 kb on - strandat 395.892 kb on + strandat 395.893 kb on - strandat 395.912 kb on - strandat 395.936 kb on + strandat 395.948 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
393,896 - -0.9
393,923 + -1.1
393,923 + -1.3
393,923 + -1.8
393,923 + +3.0
393,924 - +0.5
393,930 + +0.2
393,930 + -0.4
394,029 + -0.7
394,104 + -1.2
394,135 - +1.3
394,161 + Echvi_0366 0.12 -0.0
394,162 - Echvi_0366 0.12 +1.5
394,163 + Echvi_0366 0.12 +4.5
394,195 - Echvi_0366 0.15 +1.2
394,206 - Echvi_0366 0.16 +0.0
394,263 + Echvi_0366 0.22 -1.8
394,263 + Echvi_0366 0.22 -0.7
394,263 + Echvi_0366 0.22 +0.3
394,263 + Echvi_0366 0.22 +0.3
394,264 - Echvi_0366 0.23 -0.4
394,264 - Echvi_0366 0.23 -0.0
394,440 + Echvi_0366 0.41 +1.5
394,440 + Echvi_0366 0.41 -1.1
394,440 + Echvi_0366 0.41 +1.0
394,542 - Echvi_0366 0.52 +0.6
394,618 - Echvi_0366 0.60 -0.5
394,642 - Echvi_0366 0.63 +0.3
394,660 + Echvi_0366 0.64 +1.5
394,661 - Echvi_0366 0.65 +0.6
394,661 - Echvi_0366 0.65 +0.6
394,666 + Echvi_0366 0.65 +0.6
394,720 + Echvi_0366 0.71 -1.5
394,911 - +1.0
394,911 - -0.5
394,914 + -0.4
394,915 - +1.0
394,915 - +1.5
394,939 - +0.2
394,967 - +0.1
394,974 + -1.1
394,975 - -0.5
395,030 - -0.9
395,065 + +0.4
395,069 - +1.0
395,108 + -0.8
395,173 + Echvi_0367 0.13 -0.3
395,174 - Echvi_0367 0.13 -0.5
395,242 + Echvi_0367 0.20 -1.2
395,267 + Echvi_0367 0.23 -1.2
395,292 - Echvi_0367 0.26 +3.0
395,328 + Echvi_0367 0.30 +1.0
395,338 - Echvi_0367 0.31 +2.6
395,359 - Echvi_0367 0.33 -1.8
395,381 - Echvi_0367 0.36 +0.3
395,388 - Echvi_0367 0.36 -0.0
395,406 - Echvi_0367 0.38 -0.1
395,414 + Echvi_0367 0.39 -0.4
395,415 - Echvi_0367 0.39 +1.0
395,416 + Echvi_0367 0.39 +0.4
395,417 - Echvi_0367 0.40 +0.9
395,417 - Echvi_0367 0.40 -0.4
395,417 - Echvi_0367 0.40 -0.3
395,417 - Echvi_0367 0.40 -0.0
395,417 - Echvi_0367 0.40 -1.0
395,417 - Echvi_0367 0.40 +1.4
395,502 + +1.0
395,563 + Echvi_0367 0.56 -1.2
395,576 + Echvi_0367 0.57 -0.2
395,596 + Echvi_0367 0.59 +0.7
395,596 + Echvi_0367 0.59 -0.5
395,596 + Echvi_0367 0.59 -1.7
395,596 + Echvi_0367 0.59 +0.5
395,596 + Echvi_0367 0.59 +0.9
395,597 - Echvi_0367 0.59 +0.3
395,597 - Echvi_0367 0.59 +1.4
395,602 + Echvi_0367 0.60 +0.4
395,640 - Echvi_0367 0.64 -0.2
395,659 + Echvi_0367 0.66 -0.2
395,659 + Echvi_0367 0.66 -1.0
395,660 - Echvi_0367 0.66 -1.4
395,660 - Echvi_0367 0.66 -0.4
395,712 - Echvi_0367 0.72 -1.4
395,713 + Echvi_0367 0.72 +0.0
395,713 + Echvi_0367 0.72 -1.9
395,713 + Echvi_0367 0.72 -0.3
395,714 - Echvi_0367 0.72 -1.0
395,750 - Echvi_0367 0.76 +0.4
395,759 + Echvi_0367 0.77 -0.7
395,759 + Echvi_0367 0.77 -0.5
395,760 - Echvi_0367 0.77 -1.4
395,891 - +1.0
395,891 - +1.8
395,892 + +0.2
395,893 - -0.9
395,912 - -1.4
395,936 + -0.7
395,948 + -0.0

Or see this region's nucleotide sequence