Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0331

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0330 and Echvi_0331 are separated by 281 nucleotidesEchvi_0331 and Echvi_0332 are separated by 386 nucleotides Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089 _0330 Echvi_0331: Echvi_0331 - Uncharacterized conserved protein, at 347,371 to 348,957 _0331 Echvi_0332: Echvi_0332 - Zn-dependent protease with chaperone function, at 349,344 to 350,576 _0332 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2 3at 346.378 kb on - strand, within Echvi_0330at 346.562 kb on - strand, within Echvi_0330at 346.606 kb on - strand, within Echvi_0330at 346.938 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.969 kb on - strand, within Echvi_0330at 346.969 kb on - strand, within Echvi_0330at 346.978 kb on + strand, within Echvi_0330at 346.978 kb on + strand, within Echvi_0330at 347.072 kb on - strandat 347.075 kb on + strandat 347.185 kb on + strandat 347.186 kb on - strandat 347.204 kb on + strandat 347.271 kb on + strandat 347.276 kb on - strandat 347.276 kb on - strandat 347.276 kb on - strandat 347.287 kb on - strandat 347.294 kb on - strandat 347.308 kb on - strandat 347.355 kb on + strandat 347.356 kb on - strandat 347.365 kb on + strandat 347.532 kb on + strand, within Echvi_0331at 347.533 kb on - strand, within Echvi_0331at 347.537 kb on + strand, within Echvi_0331at 347.538 kb on - strand, within Echvi_0331at 347.556 kb on - strand, within Echvi_0331at 347.630 kb on + strand, within Echvi_0331at 347.631 kb on - strand, within Echvi_0331at 347.631 kb on - strand, within Echvi_0331at 347.756 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.856 kb on - strand, within Echvi_0331at 348.231 kb on - strand, within Echvi_0331at 348.281 kb on - strand, within Echvi_0331at 348.299 kb on + strand, within Echvi_0331at 348.299 kb on + strand, within Echvi_0331at 348.299 kb on + strand, within Echvi_0331at 348.309 kb on - strand, within Echvi_0331at 348.334 kb on + strand, within Echvi_0331at 348.568 kb on - strand, within Echvi_0331at 348.588 kb on - strand, within Echvi_0331at 348.588 kb on - strand, within Echvi_0331at 348.687 kb on + strand, within Echvi_0331at 348.687 kb on + strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.740 kb on + strand, within Echvi_0331at 348.741 kb on - strand, within Echvi_0331at 348.882 kb on + strandat 348.882 kb on + strandat 348.883 kb on - strandat 348.888 kb on + strandat 348.934 kb on + strandat 348.935 kb on - strandat 348.938 kb on - strandat 348.953 kb on - strandat 348.958 kb on - strandat 348.976 kb on + strandat 348.976 kb on + strandat 348.984 kb on + strandat 349.038 kb on + strandat 349.084 kb on - strandat 349.134 kb on + strandat 349.135 kb on - strandat 349.140 kb on - strandat 349.231 kb on + strandat 349.231 kb on + strandat 349.237 kb on + strandat 349.238 kb on - strandat 349.273 kb on + strandat 349.274 kb on - strandat 349.306 kb on + strandat 349.307 kb on - strandat 349.307 kb on - strandat 349.307 kb on - strandat 349.345 kb on + strandat 349.346 kb on - strandat 349.483 kb on + strand, within Echvi_0332at 349.499 kb on - strand, within Echvi_0332at 349.581 kb on + strand, within Echvi_0332at 349.581 kb on + strand, within Echvi_0332at 349.582 kb on - strand, within Echvi_0332at 349.582 kb on - strand, within Echvi_0332at 349.722 kb on - strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.800 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.921 kb on + strand, within Echvi_0332

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
346,378 - Echvi_0330 0.12 +1.2
346,562 - Echvi_0330 0.35 +1.3
346,606 - Echvi_0330 0.40 +1.5
346,938 + Echvi_0330 0.81 +0.1
346,968 + Echvi_0330 0.85 +1.5
346,968 + Echvi_0330 0.85 +1.4
346,968 + Echvi_0330 0.85 +0.1
346,969 - Echvi_0330 0.85 -0.6
346,969 - Echvi_0330 0.85 -0.4
346,978 + Echvi_0330 0.86 +1.0
346,978 + Echvi_0330 0.86 +0.4
347,072 - -0.4
347,075 + -0.2
347,185 + +0.2
347,186 - +1.0
347,204 + +0.4
347,271 + +1.0
347,276 - -0.6
347,276 - +0.0
347,276 - -0.6
347,287 - +0.0
347,294 - -1.9
347,308 - +1.0
347,355 + -1.2
347,356 - +0.9
347,365 + +0.1
347,532 + Echvi_0331 0.10 -0.4
347,533 - Echvi_0331 0.10 -1.0
347,537 + Echvi_0331 0.10 +0.7
347,538 - Echvi_0331 0.11 -0.6
347,556 - Echvi_0331 0.12 +0.6
347,630 + Echvi_0331 0.16 +0.1
347,631 - Echvi_0331 0.16 -0.7
347,631 - Echvi_0331 0.16 -1.9
347,756 + Echvi_0331 0.24 -0.9
347,855 + Echvi_0331 0.30 +0.1
347,855 + Echvi_0331 0.30 -1.5
347,855 + Echvi_0331 0.30 +3.0
347,856 - Echvi_0331 0.31 -0.9
348,231 - Echvi_0331 0.54 +1.0
348,281 - Echvi_0331 0.57 -0.0
348,299 + Echvi_0331 0.58 -0.3
348,299 + Echvi_0331 0.58 -0.4
348,299 + Echvi_0331 0.58 -2.3
348,309 - Echvi_0331 0.59 -1.3
348,334 + Echvi_0331 0.61 +0.7
348,568 - Echvi_0331 0.75 -0.4
348,588 - Echvi_0331 0.77 +0.7
348,588 - Echvi_0331 0.77 -1.4
348,687 + Echvi_0331 0.83 -0.6
348,687 + Echvi_0331 0.83 +0.0
348,688 - Echvi_0331 0.83 -1.9
348,688 - Echvi_0331 0.83 -0.1
348,688 - Echvi_0331 0.83 -1.1
348,740 + Echvi_0331 0.86 +0.7
348,741 - Echvi_0331 0.86 -0.4
348,882 + -0.3
348,882 + +1.0
348,883 - +1.0
348,888 + +0.2
348,934 + -0.6
348,935 - -2.0
348,938 - +0.5
348,953 - +1.1
348,958 - -0.7
348,976 + -1.0
348,976 + +0.1
348,984 + -0.4
349,038 + +0.6
349,084 - +2.0
349,134 + -2.0
349,135 - +0.1
349,140 - +1.4
349,231 + -1.0
349,231 + +1.0
349,237 + -0.7
349,238 - +2.2
349,273 + -0.2
349,274 - +2.0
349,306 + -1.2
349,307 - +0.1
349,307 - +1.5
349,307 - +0.8
349,345 + +0.1
349,346 - +0.5
349,483 + Echvi_0332 0.11 +0.7
349,499 - Echvi_0332 0.13 -0.9
349,581 + Echvi_0332 0.19 -0.0
349,581 + Echvi_0332 0.19 -2.0
349,582 - Echvi_0332 0.19 +0.4
349,582 - Echvi_0332 0.19 -0.0
349,722 - Echvi_0332 0.31 -0.3
349,733 + Echvi_0332 0.32 -0.0
349,733 + Echvi_0332 0.32 -0.6
349,734 - Echvi_0332 0.32 -0.2
349,734 - Echvi_0332 0.32 +1.3
349,734 - Echvi_0332 0.32 +0.5
349,734 - Echvi_0332 0.32 -0.4
349,734 - Echvi_0332 0.32 +0.2
349,736 - Echvi_0332 0.32 +0.1
349,736 - Echvi_0332 0.32 +0.2
349,781 + Echvi_0332 0.35 +0.3
349,781 + Echvi_0332 0.35 +0.6
349,781 + Echvi_0332 0.35 -0.4
349,782 - Echvi_0332 0.36 +0.7
349,782 - Echvi_0332 0.36 -0.1
349,782 - Echvi_0332 0.36 +1.6
349,782 - Echvi_0332 0.36 +2.4
349,782 - Echvi_0332 0.36 +0.5
349,800 - Echvi_0332 0.37 -0.9
349,805 - Echvi_0332 0.37 +1.2
349,805 - Echvi_0332 0.37 -0.5
349,921 + Echvi_0332 0.47 -1.3

Or see this region's nucleotide sequence