Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0328 and Echvi_0329 are separated by 69 nucleotides Echvi_0329 and Echvi_0330 are separated by 225 nucleotides
Echvi_0328: Echvi_0328 - hypothetical protein, at 345,113 to 345,778
_0328
Echvi_0329: Echvi_0329 - hypothetical protein, at 345,848 to 346,051
_0329
Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089
_0330
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.878 kb on - strand at 344.878 kb on - strand at 344.878 kb on - strand at 344.878 kb on - strand at 344.879 kb on + strand at 344.880 kb on - strand at 344.899 kb on - strand at 344.932 kb on + strand at 344.944 kb on + strand at 344.982 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.029 kb on + strand at 345.094 kb on + strand at 345.094 kb on + strand at 345.094 kb on + strand at 345.094 kb on + strand at 345.105 kb on - strand at 345.114 kb on + strand at 345.115 kb on - strand at 345.116 kb on + strand at 345.117 kb on - strand at 345.117 kb on - strand at 345.117 kb on - strand at 345.117 kb on - strand at 345.142 kb on - strand at 345.143 kb on + strand at 345.144 kb on - strand at 345.164 kb on - strand at 345.170 kb on + strand at 345.171 kb on - strand at 345.175 kb on - strand at 345.221 kb on + strand, within Echvi_0328 at 345.222 kb on - strand, within Echvi_0328 at 345.238 kb on + strand, within Echvi_0328 at 345.291 kb on - strand, within Echvi_0328 at 345.303 kb on + strand, within Echvi_0328 at 345.304 kb on - strand, within Echvi_0328 at 345.304 kb on - strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.369 kb on - strand, within Echvi_0328 at 345.369 kb on - strand, within Echvi_0328 at 345.408 kb on + strand, within Echvi_0328 at 345.416 kb on + strand, within Echvi_0328 at 345.438 kb on - strand, within Echvi_0328 at 345.476 kb on - strand, within Echvi_0328 at 345.481 kb on + strand, within Echvi_0328 at 345.506 kb on - strand, within Echvi_0328 at 345.632 kb on + strand, within Echvi_0328 at 345.731 kb on - strand at 345.770 kb on + strand at 345.818 kb on + strand at 345.829 kb on + strand at 345.829 kb on + strand at 345.851 kb on + strand at 345.917 kb on + strand, within Echvi_0329 at 345.944 kb on + strand, within Echvi_0329 at 345.945 kb on - strand, within Echvi_0329 at 345.946 kb on + strand, within Echvi_0329 at 345.998 kb on - strand, within Echvi_0329 at 345.999 kb on + strand, within Echvi_0329 at 346.055 kb on + strand at 346.056 kb on - strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.094 kb on - strand at 346.158 kb on + strand at 346.159 kb on - strand at 346.161 kb on + strand at 346.162 kb on - strand at 346.162 kb on - strand at 346.165 kb on - strand at 346.165 kb on - strand at 346.261 kb on - strand at 346.278 kb on + strand at 346.378 kb on - strand, within Echvi_0330 at 346.562 kb on - strand, within Echvi_0330 at 346.606 kb on - strand, within Echvi_0330 at 346.938 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.969 kb on - strand, within Echvi_0330 at 346.969 kb on - strand, within Echvi_0330 at 346.978 kb on + strand, within Echvi_0330 at 346.978 kb on + strand, within Echvi_0330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 344,878 - -1.9 344,878 - -1.3 344,878 - +0.6 344,878 - +1.3 344,879 + -0.5 344,880 - -0.4 344,899 - -0.8 344,932 + +0.6 344,944 + +1.4 344,982 + +0.5 345,009 + +0.1 345,009 + +2.3 345,009 + -1.0 345,009 + +0.9 345,009 + +1.0 345,010 - -0.6 345,010 - -1.2 345,029 + +0.1 345,094 + -0.5 345,094 + -0.3 345,094 + -0.9 345,094 + +0.7 345,105 - -0.5 345,114 + +0.6 345,115 - +0.5 345,116 + +1.3 345,117 - -0.1 345,117 - +0.7 345,117 - +1.3 345,117 - -0.7 345,142 - +0.2 345,143 + +1.0 345,144 - -0.5 345,164 - -1.4 345,170 + +0.5 345,171 - -0.9 345,175 - -0.3 345,221 + Echvi_0328 0.16 +1.4 345,222 - Echvi_0328 0.16 -1.4 345,238 + Echvi_0328 0.19 +2.0 345,291 - Echvi_0328 0.27 +0.5 345,303 + Echvi_0328 0.29 -0.1 345,304 - Echvi_0328 0.29 +0.2 345,304 - Echvi_0328 0.29 +0.1 345,368 + Echvi_0328 0.38 +0.7 345,368 + Echvi_0328 0.38 -0.2 345,368 + Echvi_0328 0.38 +0.5 345,368 + Echvi_0328 0.38 -0.3 345,369 - Echvi_0328 0.38 -0.1 345,369 - Echvi_0328 0.38 -0.3 345,408 + Echvi_0328 0.44 -0.5 345,416 + Echvi_0328 0.45 -0.2 345,438 - Echvi_0328 0.49 -0.1 345,476 - Echvi_0328 0.55 +0.7 345,481 + Echvi_0328 0.55 -1.0 345,506 - Echvi_0328 0.59 -1.2 345,632 + Echvi_0328 0.78 -1.3 345,731 - +0.1 345,770 + +2.0 345,818 + +0.5 345,829 + +0.5 345,829 + +0.7 345,851 + +0.5 345,917 + Echvi_0329 0.34 -0.9 345,944 + Echvi_0329 0.47 +1.4 345,945 - Echvi_0329 0.48 -1.0 345,946 + Echvi_0329 0.48 -0.2 345,998 - Echvi_0329 0.74 -1.7 345,999 + Echvi_0329 0.74 +0.4 346,055 + -0.0 346,056 - -0.3 346,058 + -0.9 346,058 + -0.2 346,058 + +0.1 346,058 + +0.4 346,094 - +0.7 346,158 + -1.6 346,159 - +0.4 346,161 + +0.3 346,162 - +0.3 346,162 - -2.1 346,165 - +0.5 346,165 - +0.4 346,261 - -1.5 346,278 + -0.9 346,378 - Echvi_0330 0.12 +1.2 346,562 - Echvi_0330 0.35 +1.3 346,606 - Echvi_0330 0.40 +1.5 346,938 + Echvi_0330 0.81 +0.1 346,968 + Echvi_0330 0.85 +1.5 346,968 + Echvi_0330 0.85 +1.4 346,968 + Echvi_0330 0.85 +0.1 346,969 - Echvi_0330 0.85 -0.6 346,969 - Echvi_0330 0.85 -0.4 346,978 + Echvi_0330 0.86 +1.0 346,978 + Echvi_0330 0.86 +0.4
Or see this region's nucleotide sequence