Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0274

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0270 and Echvi_0271 are separated by 57 nucleotidesEchvi_0271 and Echvi_0272 are separated by 36 nucleotidesEchvi_0272 and Echvi_0273 are separated by 222 nucleotidesEchvi_0273 and Echvi_0274 are separated by 166 nucleotidesEchvi_0274 and Echvi_0275 are separated by 48 nucleotidesEchvi_0275 and Echvi_0276 are separated by 100 nucleotides Echvi_0270: Echvi_0270 - translation elongation factor TU, at 274,683 to 275,870 _0270 Echvi_0271: Echvi_0271 - tRNA, at 275,928 to 276,002 _0271 Echvi_0272: Echvi_0272 - tRNA, at 276,039 to 276,114 _0272 Echvi_0273: Echvi_0273 - tRNA, at 276,337 to 276,419 _0273 Echvi_0274: Echvi_0274 - Aminopeptidase N, at 276,586 to 279,156 _0274 Echvi_0275: Echvi_0275 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 279,205 to 279,699 _0275 Echvi_0276: Echvi_0276 - uridylate kinase, at 279,800 to 280,510 _0276 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 276.633 kb on + strandat 276.662 kb on - strandat 276.664 kb on - strandat 276.682 kb on + strandat 276.683 kb on - strandat 276.699 kb on + strandat 276.700 kb on - strandat 276.737 kb on + strandat 276.738 kb on - strandat 276.818 kb on + strandat 276.819 kb on - strandat 276.819 kb on - strandat 276.842 kb on + strandat 276.842 kb on + strandat 276.843 kb on - strand, within Echvi_0274at 276.843 kb on - strand, within Echvi_0274at 276.843 kb on - strand, within Echvi_0274at 276.843 kb on - strand, within Echvi_0274at 276.847 kb on + strand, within Echvi_0274at 276.847 kb on + strand, within Echvi_0274at 276.848 kb on - strand, within Echvi_0274at 276.864 kb on + strand, within Echvi_0274at 276.864 kb on + strand, within Echvi_0274at 276.864 kb on + strand, within Echvi_0274at 276.872 kb on + strand, within Echvi_0274at 276.873 kb on - strand, within Echvi_0274at 276.873 kb on - strand, within Echvi_0274at 276.873 kb on - strand, within Echvi_0274at 276.884 kb on - strand, within Echvi_0274at 276.939 kb on + strand, within Echvi_0274at 276.940 kb on - strand, within Echvi_0274at 276.979 kb on + strand, within Echvi_0274at 276.979 kb on + strand, within Echvi_0274at 276.980 kb on - strand, within Echvi_0274at 277.019 kb on + strand, within Echvi_0274at 277.019 kb on + strand, within Echvi_0274at 277.019 kb on + strand, within Echvi_0274at 277.019 kb on + strand, within Echvi_0274at 277.020 kb on - strand, within Echvi_0274at 277.020 kb on - strand, within Echvi_0274at 277.076 kb on + strand, within Echvi_0274at 277.076 kb on + strand, within Echvi_0274at 277.076 kb on + strand, within Echvi_0274at 277.077 kb on - strand, within Echvi_0274at 277.088 kb on + strand, within Echvi_0274at 277.108 kb on + strand, within Echvi_0274at 277.108 kb on + strand, within Echvi_0274at 277.109 kb on - strand, within Echvi_0274at 277.109 kb on - strand, within Echvi_0274at 277.109 kb on - strand, within Echvi_0274at 277.193 kb on - strand, within Echvi_0274at 277.197 kb on + strand, within Echvi_0274at 277.197 kb on + strand, within Echvi_0274at 277.198 kb on - strand, within Echvi_0274at 277.325 kb on + strand, within Echvi_0274at 277.383 kb on + strand, within Echvi_0274at 277.384 kb on - strand, within Echvi_0274at 277.384 kb on - strand, within Echvi_0274at 277.408 kb on + strand, within Echvi_0274at 277.408 kb on + strand, within Echvi_0274at 277.427 kb on + strand, within Echvi_0274at 277.428 kb on - strand, within Echvi_0274at 277.488 kb on + strand, within Echvi_0274at 277.489 kb on - strand, within Echvi_0274at 277.520 kb on + strand, within Echvi_0274at 277.521 kb on - strand, within Echvi_0274at 277.521 kb on - strand, within Echvi_0274at 277.521 kb on - strand, within Echvi_0274at 277.521 kb on - strand, within Echvi_0274at 277.547 kb on + strand, within Echvi_0274at 277.547 kb on + strand, within Echvi_0274at 277.548 kb on - strand, within Echvi_0274at 277.549 kb on + strand, within Echvi_0274at 277.550 kb on - strand, within Echvi_0274at 277.550 kb on - strand, within Echvi_0274at 277.550 kb on - strand, within Echvi_0274at 277.557 kb on + strand, within Echvi_0274at 277.558 kb on - strand, within Echvi_0274at 277.796 kb on + strand, within Echvi_0274at 277.796 kb on + strand, within Echvi_0274at 277.809 kb on + strand, within Echvi_0274at 277.809 kb on + strand, within Echvi_0274at 277.809 kb on + strand, within Echvi_0274at 277.809 kb on + strand, within Echvi_0274at 277.809 kb on + strand, within Echvi_0274at 277.809 kb on + strand, within Echvi_0274at 277.810 kb on - strand, within Echvi_0274at 277.810 kb on - strand, within Echvi_0274at 277.835 kb on + strand, within Echvi_0274at 277.871 kb on + strand, within Echvi_0274at 277.871 kb on + strand, within Echvi_0274at 277.872 kb on - strand, within Echvi_0274at 277.919 kb on + strand, within Echvi_0274at 277.919 kb on + strand, within Echvi_0274at 277.939 kb on - strand, within Echvi_0274at 277.988 kb on + strand, within Echvi_0274at 277.988 kb on + strand, within Echvi_0274at 277.988 kb on + strand, within Echvi_0274at 277.988 kb on + strand, within Echvi_0274at 278.051 kb on + strand, within Echvi_0274at 278.052 kb on - strand, within Echvi_0274at 278.100 kb on - strand, within Echvi_0274at 278.152 kb on - strand, within Echvi_0274at 278.210 kb on + strand, within Echvi_0274at 278.210 kb on + strand, within Echvi_0274at 278.211 kb on - strand, within Echvi_0274at 278.318 kb on + strand, within Echvi_0274at 278.319 kb on - strand, within Echvi_0274at 278.319 kb on - strand, within Echvi_0274at 278.322 kb on - strand, within Echvi_0274at 278.322 kb on - strand, within Echvi_0274at 278.590 kb on + strand, within Echvi_0274at 278.633 kb on + strand, within Echvi_0274at 278.676 kb on + strand, within Echvi_0274at 278.677 kb on - strand, within Echvi_0274at 278.721 kb on + strand, within Echvi_0274at 278.739 kb on + strand, within Echvi_0274at 278.740 kb on - strand, within Echvi_0274at 278.759 kb on - strand, within Echvi_0274at 278.775 kb on - strand, within Echvi_0274at 278.778 kb on + strand, within Echvi_0274at 278.944 kb on - strandat 278.944 kb on - strandat 278.944 kb on - strandat 278.944 kb on - strandat 278.980 kb on - strandat 279.011 kb on - strandat 279.055 kb on + strandat 279.067 kb on - strandat 279.100 kb on - strandat 279.181 kb on - strandat 279.237 kb on + strandat 279.297 kb on - strand, within Echvi_0275at 279.328 kb on - strand, within Echvi_0275at 279.613 kb on - strand, within Echvi_0275at 279.648 kb on - strand, within Echvi_0275at 279.698 kb on - strandat 279.712 kb on - strandat 279.752 kb on + strandat 279.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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276,633 + +0.7
276,662 - +0.1
276,664 - -0.5
276,682 + -0.1
276,683 - -1.1
276,699 + +1.0
276,700 - +0.3
276,737 + +1.0
276,738 - +1.0
276,818 + +0.8
276,819 - -2.7
276,819 - +0.2
276,842 + -0.4
276,842 + -0.0
276,843 - Echvi_0274 0.10 -0.6
276,843 - Echvi_0274 0.10 -0.2
276,843 - Echvi_0274 0.10 -0.4
276,843 - Echvi_0274 0.10 +0.4
276,847 + Echvi_0274 0.10 +1.3
276,847 + Echvi_0274 0.10 +0.8
276,848 - Echvi_0274 0.10 -1.0
276,864 + Echvi_0274 0.11 -0.4
276,864 + Echvi_0274 0.11 +1.3
276,864 + Echvi_0274 0.11 +0.2
276,872 + Echvi_0274 0.11 +0.4
276,873 - Echvi_0274 0.11 +0.7
276,873 - Echvi_0274 0.11 -1.0
276,873 - Echvi_0274 0.11 +1.5
276,884 - Echvi_0274 0.12 +0.4
276,939 + Echvi_0274 0.14 +0.6
276,940 - Echvi_0274 0.14 -1.4
276,979 + Echvi_0274 0.15 +0.1
276,979 + Echvi_0274 0.15 -0.2
276,980 - Echvi_0274 0.15 -0.0
277,019 + Echvi_0274 0.17 +1.6
277,019 + Echvi_0274 0.17 +0.3
277,019 + Echvi_0274 0.17 -0.1
277,019 + Echvi_0274 0.17 +0.4
277,020 - Echvi_0274 0.17 -0.0
277,020 - Echvi_0274 0.17 -2.9
277,076 + Echvi_0274 0.19 +1.7
277,076 + Echvi_0274 0.19 +0.7
277,076 + Echvi_0274 0.19 -1.9
277,077 - Echvi_0274 0.19 -0.9
277,088 + Echvi_0274 0.20 -0.9
277,108 + Echvi_0274 0.20 +4.5
277,108 + Echvi_0274 0.20 +1.6
277,109 - Echvi_0274 0.20 +0.4
277,109 - Echvi_0274 0.20 +0.3
277,109 - Echvi_0274 0.20 +0.5
277,193 - Echvi_0274 0.24 +0.1
277,197 + Echvi_0274 0.24 +0.1
277,197 + Echvi_0274 0.24 +0.6
277,198 - Echvi_0274 0.24 -1.3
277,325 + Echvi_0274 0.29 -0.7
277,383 + Echvi_0274 0.31 -1.6
277,384 - Echvi_0274 0.31 -1.0
277,384 - Echvi_0274 0.31 +0.1
277,408 + Echvi_0274 0.32 -1.0
277,408 + Echvi_0274 0.32 -0.7
277,427 + Echvi_0274 0.33 +1.9
277,428 - Echvi_0274 0.33 +1.2
277,488 + Echvi_0274 0.35 -1.2
277,489 - Echvi_0274 0.35 +1.0
277,520 + Echvi_0274 0.36 +1.6
277,521 - Echvi_0274 0.36 +0.7
277,521 - Echvi_0274 0.36 -0.7
277,521 - Echvi_0274 0.36 +1.1
277,521 - Echvi_0274 0.36 -1.2
277,547 + Echvi_0274 0.37 +1.1
277,547 + Echvi_0274 0.37 -2.0
277,548 - Echvi_0274 0.37 -1.0
277,549 + Echvi_0274 0.37 +0.6
277,550 - Echvi_0274 0.37 -1.5
277,550 - Echvi_0274 0.37 -0.5
277,550 - Echvi_0274 0.37 -1.9
277,557 + Echvi_0274 0.38 +0.5
277,558 - Echvi_0274 0.38 +0.1
277,796 + Echvi_0274 0.47 +1.1
277,796 + Echvi_0274 0.47 -0.2
277,809 + Echvi_0274 0.48 +0.5
277,809 + Echvi_0274 0.48 -0.5
277,809 + Echvi_0274 0.48 +0.7
277,809 + Echvi_0274 0.48 +0.6
277,809 + Echvi_0274 0.48 +1.0
277,809 + Echvi_0274 0.48 -1.0
277,810 - Echvi_0274 0.48 +0.7
277,810 - Echvi_0274 0.48 -0.9
277,835 + Echvi_0274 0.49 -0.6
277,871 + Echvi_0274 0.50 -1.0
277,871 + Echvi_0274 0.50 +0.7
277,872 - Echvi_0274 0.50 +0.6
277,919 + Echvi_0274 0.52 -1.4
277,919 + Echvi_0274 0.52 +1.0
277,939 - Echvi_0274 0.53 -1.6
277,988 + Echvi_0274 0.55 -1.7
277,988 + Echvi_0274 0.55 -1.2
277,988 + Echvi_0274 0.55 -0.9
277,988 + Echvi_0274 0.55 +0.4
278,051 + Echvi_0274 0.57 +0.9
278,052 - Echvi_0274 0.57 -1.7
278,100 - Echvi_0274 0.59 -0.3
278,152 - Echvi_0274 0.61 +0.3
278,210 + Echvi_0274 0.63 -0.5
278,210 + Echvi_0274 0.63 -0.0
278,211 - Echvi_0274 0.63 -0.6
278,318 + Echvi_0274 0.67 +0.6
278,319 - Echvi_0274 0.67 -0.4
278,319 - Echvi_0274 0.67 -0.7
278,322 - Echvi_0274 0.68 +0.3
278,322 - Echvi_0274 0.68 +1.1
278,590 + Echvi_0274 0.78 +2.8
278,633 + Echvi_0274 0.80 +0.8
278,676 + Echvi_0274 0.81 -1.8
278,677 - Echvi_0274 0.81 -0.4
278,721 + Echvi_0274 0.83 -2.0
278,739 + Echvi_0274 0.84 +0.9
278,740 - Echvi_0274 0.84 -0.3
278,759 - Echvi_0274 0.85 -0.8
278,775 - Echvi_0274 0.85 +1.2
278,778 + Echvi_0274 0.85 +1.1
278,944 - -0.6
278,944 - +0.2
278,944 - -0.6
278,944 - +0.5
278,980 - +0.4
279,011 - -1.0
279,055 + +1.1
279,067 - -0.2
279,100 - -1.1
279,181 - +0.5
279,237 + -1.4
279,297 - Echvi_0275 0.19 +1.5
279,328 - Echvi_0275 0.25 +0.0
279,613 - Echvi_0275 0.82 +0.6
279,648 - Echvi_0275 0.89 +0.7
279,698 - -1.4
279,712 - -1.8
279,752 + +2.2
279,785 + -0.2

Or see this region's nucleotide sequence