Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0221 and Echvi_0222 are separated by 15 nucleotides Echvi_0222 and Echvi_0223 overlap by 20 nucleotides Echvi_0223 and Echvi_0224 are separated by 261 nucleotides Echvi_0224 and Echvi_0225 are separated by 144 nucleotides
Echvi_0221: Echvi_0221 - Serine acetyltransferase, at 239,684 to 240,526
_0221
Echvi_0222: Echvi_0222 - hypothetical protein, at 240,542 to 241,114
_0222
Echvi_0223: Echvi_0223 - Septum formation initiator., at 241,095 to 241,382
_0223
Echvi_0224: Echvi_0224 - hypothetical protein, at 241,644 to 242,017
_0224
Echvi_0225: Echvi_0225 - phosphopyruvate hydratase, at 242,162 to 243,439
_0225
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.537 kb on - strand at 240.544 kb on - strand at 240.546 kb on - strand at 240.571 kb on - strand at 240.571 kb on - strand at 240.571 kb on - strand at 240.583 kb on - strand at 240.586 kb on + strand at 240.615 kb on + strand, within Echvi_0222 at 240.664 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.735 kb on + strand, within Echvi_0222 at 240.736 kb on - strand, within Echvi_0222 at 240.736 kb on - strand, within Echvi_0222 at 240.736 kb on - strand, within Echvi_0222 at 240.744 kb on - strand, within Echvi_0222 at 240.760 kb on - strand, within Echvi_0222 at 240.794 kb on - strand, within Echvi_0222 at 240.795 kb on + strand, within Echvi_0222 at 240.796 kb on - strand, within Echvi_0222 at 240.820 kb on - strand, within Echvi_0222 at 240.820 kb on - strand, within Echvi_0222 at 240.848 kb on - strand, within Echvi_0222 at 240.864 kb on + strand, within Echvi_0222 at 240.865 kb on - strand, within Echvi_0222 at 240.933 kb on + strand, within Echvi_0222 at 240.933 kb on + strand, within Echvi_0222 at 240.934 kb on - strand, within Echvi_0222 at 241.044 kb on - strand, within Echvi_0222 at 241.398 kb on - strand at 241.402 kb on - strand at 241.411 kb on - strand at 241.419 kb on + strand at 241.448 kb on + strand at 241.448 kb on + strand at 241.449 kb on - strand at 241.454 kb on - strand at 241.460 kb on + strand at 241.487 kb on + strand at 241.496 kb on + strand at 241.496 kb on + strand at 241.501 kb on - strand at 241.503 kb on + strand at 241.560 kb on + strand at 241.561 kb on - strand at 241.650 kb on + strand at 241.651 kb on - strand at 241.651 kb on - strand at 241.691 kb on + strand, within Echvi_0224 at 241.692 kb on - strand, within Echvi_0224 at 241.764 kb on - strand, within Echvi_0224 at 241.768 kb on - strand, within Echvi_0224 at 241.782 kb on - strand, within Echvi_0224 at 241.890 kb on + strand, within Echvi_0224 at 241.891 kb on - strand, within Echvi_0224 at 241.962 kb on + strand, within Echvi_0224 at 241.963 kb on - strand, within Echvi_0224 at 241.996 kb on - strand at 242.142 kb on + strand at 242.145 kb on + strand at 242.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 240,537 - -0.3 240,544 - +1.2 240,546 - +0.4 240,571 - -0.2 240,571 - -1.0 240,571 - -0.2 240,583 - -0.3 240,586 + +0.4 240,615 + Echvi_0222 0.13 -1.5 240,664 - Echvi_0222 0.21 -0.9 240,734 - Echvi_0222 0.34 +2.5 240,734 - Echvi_0222 0.34 -1.6 240,734 - Echvi_0222 0.34 -1.1 240,734 - Echvi_0222 0.34 -0.5 240,735 + Echvi_0222 0.34 +0.4 240,736 - Echvi_0222 0.34 -1.1 240,736 - Echvi_0222 0.34 -1.9 240,736 - Echvi_0222 0.34 -0.0 240,744 - Echvi_0222 0.35 -1.6 240,760 - Echvi_0222 0.38 -0.0 240,794 - Echvi_0222 0.44 -1.4 240,795 + Echvi_0222 0.44 +3.3 240,796 - Echvi_0222 0.44 +0.6 240,820 - Echvi_0222 0.49 -2.9 240,820 - Echvi_0222 0.49 -1.7 240,848 - Echvi_0222 0.53 +0.1 240,864 + Echvi_0222 0.56 -0.6 240,865 - Echvi_0222 0.56 -0.2 240,933 + Echvi_0222 0.68 -1.6 240,933 + Echvi_0222 0.68 -1.2 240,934 - Echvi_0222 0.68 -0.7 241,044 - Echvi_0222 0.88 -0.6 241,398 - +0.4 241,402 - +1.3 241,411 - +0.6 241,419 + -0.2 241,448 + -1.5 241,448 + +0.6 241,449 - -2.9 241,454 - +0.4 241,460 + -0.6 241,487 + -0.7 241,496 + -1.0 241,496 + -0.9 241,501 - -0.8 241,503 + +0.4 241,560 + -0.4 241,561 - -0.4 241,650 + -0.3 241,651 - -1.0 241,651 - -0.0 241,691 + Echvi_0224 0.13 +0.5 241,692 - Echvi_0224 0.13 +0.3 241,764 - Echvi_0224 0.32 -2.3 241,768 - Echvi_0224 0.33 -1.5 241,782 - Echvi_0224 0.37 -1.7 241,890 + Echvi_0224 0.66 +0.6 241,891 - Echvi_0224 0.66 -0.0 241,962 + Echvi_0224 0.85 -0.6 241,963 - Echvi_0224 0.85 -0.9 241,996 - -0.6 242,142 + -0.5 242,145 + +1.0 242,163 + +0.3
Or see this region's nucleotide sequence