Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0205

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0204 and Echvi_0205 are separated by 9 nucleotidesEchvi_0205 and Echvi_0206 are separated by 73 nucleotides Echvi_0204: Echvi_0204 - N-acetyl-beta-hexosaminidase, at 222,220 to 224,154 _0204 Echvi_0205: Echvi_0205 - Metal-dependent hydrolase, at 224,164 to 224,958 _0205 Echvi_0206: Echvi_0206 - Transcriptional regulators of sugar metabolism, at 225,032 to 225,793 _0206 Position (kb) 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 223.188 kb on - strand, within Echvi_0204at 223.188 kb on - strand, within Echvi_0204at 223.188 kb on - strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.199 kb on + strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.200 kb on - strand, within Echvi_0204at 223.201 kb on + strand, within Echvi_0204at 223.201 kb on + strand, within Echvi_0204at 223.201 kb on + strand, within Echvi_0204at 223.202 kb on - strand, within Echvi_0204at 223.202 kb on - strand, within Echvi_0204at 223.379 kb on + strand, within Echvi_0204at 223.388 kb on - strand, within Echvi_0204at 223.396 kb on - strand, within Echvi_0204at 223.398 kb on + strand, within Echvi_0204at 223.399 kb on - strand, within Echvi_0204at 223.403 kb on + strand, within Echvi_0204at 223.570 kb on + strand, within Echvi_0204at 223.570 kb on + strand, within Echvi_0204at 223.571 kb on - strand, within Echvi_0204at 223.571 kb on - strand, within Echvi_0204at 223.571 kb on - strand, within Echvi_0204at 223.648 kb on + strand, within Echvi_0204at 223.710 kb on - strand, within Echvi_0204at 223.732 kb on + strand, within Echvi_0204at 223.732 kb on + strand, within Echvi_0204at 223.732 kb on + strand, within Echvi_0204at 223.733 kb on - strand, within Echvi_0204at 223.733 kb on - strand, within Echvi_0204at 223.759 kb on + strand, within Echvi_0204at 223.760 kb on - strand, within Echvi_0204at 223.760 kb on - strand, within Echvi_0204at 223.980 kb on + strandat 223.986 kb on - strandat 224.032 kb on + strandat 224.087 kb on + strandat 224.088 kb on - strandat 224.088 kb on - strandat 224.092 kb on + strandat 224.092 kb on + strandat 224.093 kb on - strandat 224.093 kb on - strandat 224.094 kb on + strandat 224.095 kb on - strandat 224.144 kb on + strandat 224.148 kb on + strandat 224.152 kb on + strandat 224.153 kb on - strandat 224.153 kb on - strandat 224.175 kb on - strandat 224.182 kb on - strandat 224.186 kb on + strandat 224.189 kb on + strandat 224.189 kb on + strandat 224.189 kb on + strandat 224.189 kb on + strandat 224.190 kb on - strandat 224.190 kb on - strandat 224.196 kb on - strandat 224.258 kb on - strand, within Echvi_0205at 224.306 kb on + strand, within Echvi_0205at 224.306 kb on + strand, within Echvi_0205at 224.307 kb on - strand, within Echvi_0205at 224.307 kb on - strand, within Echvi_0205at 224.377 kb on - strand, within Echvi_0205at 224.584 kb on + strand, within Echvi_0205at 224.585 kb on - strand, within Echvi_0205at 224.585 kb on - strand, within Echvi_0205at 224.585 kb on - strand, within Echvi_0205at 224.586 kb on + strand, within Echvi_0205at 224.587 kb on - strand, within Echvi_0205at 224.683 kb on + strand, within Echvi_0205at 224.709 kb on - strand, within Echvi_0205at 224.727 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.805 kb on + strand, within Echvi_0205at 224.806 kb on - strand, within Echvi_0205at 224.835 kb on + strand, within Echvi_0205at 224.851 kb on - strand, within Echvi_0205at 224.943 kb on - strandat 224.996 kb on + strandat 224.996 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.042 kb on - strandat 225.042 kb on - strandat 225.042 kb on - strandat 225.106 kb on + strandat 225.139 kb on + strand, within Echvi_0206at 225.153 kb on - strand, within Echvi_0206at 225.201 kb on - strand, within Echvi_0206at 225.202 kb on + strand, within Echvi_0206at 225.238 kb on + strand, within Echvi_0206at 225.238 kb on + strand, within Echvi_0206at 225.239 kb on - strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.298 kb on + strand, within Echvi_0206at 225.298 kb on + strand, within Echvi_0206at 225.298 kb on + strand, within Echvi_0206at 225.306 kb on - strand, within Echvi_0206at 225.399 kb on + strand, within Echvi_0206at 225.425 kb on + strand, within Echvi_0206at 225.508 kb on + strand, within Echvi_0206at 225.509 kb on - strand, within Echvi_0206at 225.509 kb on - strand, within Echvi_0206at 225.509 kb on - strand, within Echvi_0206at 225.511 kb on + strand, within Echvi_0206at 225.512 kb on - strand, within Echvi_0206at 225.557 kb on - strand, within Echvi_0206at 225.576 kb on - strand, within Echvi_0206at 225.608 kb on - strand, within Echvi_0206at 225.608 kb on - strand, within Echvi_0206at 225.608 kb on - strand, within Echvi_0206at 225.610 kb on + strand, within Echvi_0206at 225.619 kb on + strand, within Echvi_0206at 225.716 kb on + strand, within Echvi_0206at 225.716 kb on + strand, within Echvi_0206at 225.800 kb on - strandat 225.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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223,188 - Echvi_0204 0.50 -0.2
223,188 - Echvi_0204 0.50 +0.1
223,188 - Echvi_0204 0.50 -0.4
223,199 + Echvi_0204 0.51 -0.4
223,199 + Echvi_0204 0.51 -0.4
223,199 + Echvi_0204 0.51 +0.2
223,199 + Echvi_0204 0.51 +1.0
223,199 + Echvi_0204 0.51 +0.2
223,199 + Echvi_0204 0.51 +1.2
223,199 + Echvi_0204 0.51 -1.6
223,199 + Echvi_0204 0.51 -2.3
223,199 + Echvi_0204 0.51 -1.6
223,199 + Echvi_0204 0.51 -1.1
223,199 + Echvi_0204 0.51 -0.5
223,200 - Echvi_0204 0.51 -0.4
223,200 - Echvi_0204 0.51 -0.1
223,200 - Echvi_0204 0.51 -0.1
223,200 - Echvi_0204 0.51 -0.8
223,200 - Echvi_0204 0.51 -0.6
223,200 - Echvi_0204 0.51 -0.9
223,200 - Echvi_0204 0.51 +0.2
223,200 - Echvi_0204 0.51 +0.5
223,201 + Echvi_0204 0.51 -0.2
223,201 + Echvi_0204 0.51 +1.4
223,201 + Echvi_0204 0.51 +0.7
223,202 - Echvi_0204 0.51 +0.7
223,202 - Echvi_0204 0.51 -0.3
223,379 + Echvi_0204 0.60 +0.6
223,388 - Echvi_0204 0.60 +2.2
223,396 - Echvi_0204 0.61 +0.5
223,398 + Echvi_0204 0.61 +0.1
223,399 - Echvi_0204 0.61 +1.0
223,403 + Echvi_0204 0.61 -0.6
223,570 + Echvi_0204 0.70 +2.0
223,570 + Echvi_0204 0.70 +0.4
223,571 - Echvi_0204 0.70 -0.5
223,571 - Echvi_0204 0.70 -0.3
223,571 - Echvi_0204 0.70 +1.1
223,648 + Echvi_0204 0.74 -0.4
223,710 - Echvi_0204 0.77 -0.6
223,732 + Echvi_0204 0.78 +0.3
223,732 + Echvi_0204 0.78 +0.7
223,732 + Echvi_0204 0.78 +0.7
223,733 - Echvi_0204 0.78 +0.3
223,733 - Echvi_0204 0.78 +0.7
223,759 + Echvi_0204 0.80 -1.1
223,760 - Echvi_0204 0.80 +1.0
223,760 - Echvi_0204 0.80 -2.4
223,980 + -0.4
223,986 - -1.1
224,032 + -0.3
224,087 + +0.6
224,088 - +0.4
224,088 - +0.9
224,092 + +1.1
224,092 + +0.5
224,093 - +0.9
224,093 - +1.2
224,094 + -1.1
224,095 - -0.5
224,144 + +2.0
224,148 + +0.4
224,152 + -1.8
224,153 - -1.1
224,153 - -0.6
224,175 - -0.3
224,182 - -1.2
224,186 + -0.7
224,189 + +0.1
224,189 + -1.1
224,189 + +2.0
224,189 + -1.0
224,190 - +0.3
224,190 - -1.3
224,196 - -1.4
224,258 - Echvi_0205 0.12 +0.7
224,306 + Echvi_0205 0.18 -0.3
224,306 + Echvi_0205 0.18 +0.7
224,307 - Echvi_0205 0.18 -0.5
224,307 - Echvi_0205 0.18 -1.9
224,377 - Echvi_0205 0.27 -2.8
224,584 + Echvi_0205 0.53 +0.7
224,585 - Echvi_0205 0.53 -0.9
224,585 - Echvi_0205 0.53 +0.1
224,585 - Echvi_0205 0.53 -1.6
224,586 + Echvi_0205 0.53 +0.4
224,587 - Echvi_0205 0.53 +1.5
224,683 + Echvi_0205 0.65 +0.3
224,709 - Echvi_0205 0.69 +1.0
224,727 + Echvi_0205 0.71 +0.4
224,777 + Echvi_0205 0.77 +0.7
224,777 + Echvi_0205 0.77 +1.0
224,777 + Echvi_0205 0.77 +0.3
224,777 + Echvi_0205 0.77 +0.6
224,777 + Echvi_0205 0.77 -0.3
224,777 + Echvi_0205 0.77 +0.1
224,778 - Echvi_0205 0.77 -0.7
224,778 - Echvi_0205 0.77 -0.1
224,778 - Echvi_0205 0.77 +1.0
224,778 - Echvi_0205 0.77 -0.2
224,805 + Echvi_0205 0.81 -0.5
224,806 - Echvi_0205 0.81 +1.4
224,835 + Echvi_0205 0.84 -1.8
224,851 - Echvi_0205 0.86 -0.6
224,943 - +0.1
224,996 + -0.8
224,996 + +0.2
225,041 + +0.8
225,041 + -0.5
225,041 + -1.1
225,041 + +2.2
225,041 + -0.1
225,042 - +1.3
225,042 - +0.7
225,042 - +0.6
225,106 + +1.6
225,139 + Echvi_0206 0.14 -0.2
225,153 - Echvi_0206 0.16 -0.3
225,201 - Echvi_0206 0.22 -0.0
225,202 + Echvi_0206 0.22 +1.0
225,238 + Echvi_0206 0.27 +0.8
225,238 + Echvi_0206 0.27 -1.8
225,239 - Echvi_0206 0.27 -0.5
225,240 + Echvi_0206 0.27 +0.8
225,240 + Echvi_0206 0.27 +1.6
225,240 + Echvi_0206 0.27 +0.2
225,240 + Echvi_0206 0.27 +0.5
225,298 + Echvi_0206 0.35 +2.3
225,298 + Echvi_0206 0.35 +1.7
225,298 + Echvi_0206 0.35 +0.2
225,306 - Echvi_0206 0.36 +0.7
225,399 + Echvi_0206 0.48 +0.7
225,425 + Echvi_0206 0.52 +0.8
225,508 + Echvi_0206 0.62 -1.8
225,509 - Echvi_0206 0.63 +1.0
225,509 - Echvi_0206 0.63 +0.8
225,509 - Echvi_0206 0.63 +0.1
225,511 + Echvi_0206 0.63 +0.5
225,512 - Echvi_0206 0.63 +0.8
225,557 - Echvi_0206 0.69 +5.0
225,576 - Echvi_0206 0.71 -1.6
225,608 - Echvi_0206 0.76 -0.1
225,608 - Echvi_0206 0.76 -1.3
225,608 - Echvi_0206 0.76 -0.3
225,610 + Echvi_0206 0.76 +0.7
225,619 + Echvi_0206 0.77 +0.9
225,716 + Echvi_0206 0.90 +0.2
225,716 + Echvi_0206 0.90 +1.1
225,800 - +0.0
225,934 + +1.1

Or see this region's nucleotide sequence