Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0202

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0201 and Echvi_0202 are separated by 110 nucleotidesEchvi_0202 and Echvi_0203 are separated by 124 nucleotides Echvi_0201: Echvi_0201 - alanine dehydrogenase, at 218,311 to 219,429 _0201 Echvi_0202: Echvi_0202 - histidine ammonia-lyase, at 219,540 to 221,066 _0202 Echvi_0203: Echvi_0203 - Transcriptional regulator, at 221,191 to 222,069 _0203 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 218.555 kb on - strand, within Echvi_0201at 218.565 kb on - strand, within Echvi_0201at 218.590 kb on + strand, within Echvi_0201at 218.659 kb on + strand, within Echvi_0201at 218.697 kb on - strand, within Echvi_0201at 218.707 kb on - strand, within Echvi_0201at 218.707 kb on - strand, within Echvi_0201at 218.718 kb on - strand, within Echvi_0201at 218.847 kb on - strand, within Echvi_0201at 218.847 kb on - strand, within Echvi_0201at 218.847 kb on - strand, within Echvi_0201at 218.954 kb on + strand, within Echvi_0201at 218.954 kb on + strand, within Echvi_0201at 218.978 kb on - strand, within Echvi_0201at 219.191 kb on + strand, within Echvi_0201at 219.196 kb on + strand, within Echvi_0201at 219.333 kb on - strandat 219.345 kb on - strandat 219.347 kb on + strandat 219.453 kb on - strandat 219.453 kb on - strandat 219.520 kb on + strandat 219.567 kb on - strandat 219.647 kb on - strandat 219.648 kb on + strandat 219.648 kb on + strandat 219.729 kb on + strand, within Echvi_0202at 219.729 kb on + strand, within Echvi_0202at 219.730 kb on - strand, within Echvi_0202at 219.730 kb on - strand, within Echvi_0202at 219.730 kb on - strand, within Echvi_0202at 219.891 kb on - strand, within Echvi_0202at 219.892 kb on + strand, within Echvi_0202at 219.893 kb on - strand, within Echvi_0202at 219.993 kb on + strand, within Echvi_0202at 219.994 kb on - strand, within Echvi_0202at 219.994 kb on - strand, within Echvi_0202at 219.994 kb on - strand, within Echvi_0202at 219.995 kb on + strand, within Echvi_0202at 220.163 kb on + strand, within Echvi_0202at 220.284 kb on - strand, within Echvi_0202at 220.288 kb on - strand, within Echvi_0202at 220.320 kb on - strand, within Echvi_0202at 220.320 kb on - strand, within Echvi_0202at 220.338 kb on + strand, within Echvi_0202at 220.416 kb on - strand, within Echvi_0202at 220.439 kb on + strand, within Echvi_0202at 220.439 kb on + strand, within Echvi_0202at 220.549 kb on + strand, within Echvi_0202at 220.581 kb on + strand, within Echvi_0202at 220.726 kb on - strand, within Echvi_0202at 220.749 kb on + strand, within Echvi_0202at 220.800 kb on + strand, within Echvi_0202at 220.800 kb on + strand, within Echvi_0202at 220.805 kb on + strand, within Echvi_0202at 220.806 kb on - strand, within Echvi_0202at 220.807 kb on + strand, within Echvi_0202at 220.855 kb on + strand, within Echvi_0202at 220.882 kb on + strand, within Echvi_0202at 220.883 kb on - strand, within Echvi_0202at 220.883 kb on - strand, within Echvi_0202at 220.883 kb on - strand, within Echvi_0202at 220.901 kb on + strand, within Echvi_0202at 220.902 kb on - strand, within Echvi_0202at 220.902 kb on - strand, within Echvi_0202at 220.903 kb on + strand, within Echvi_0202at 220.903 kb on + strand, within Echvi_0202at 220.904 kb on - strand, within Echvi_0202at 220.941 kb on - strandat 220.990 kb on - strandat 221.013 kb on - strandat 221.033 kb on + strandat 221.035 kb on + strandat 221.036 kb on - strandat 221.066 kb on + strandat 221.094 kb on - strandat 221.118 kb on - strandat 221.118 kb on - strandat 221.268 kb on + strandat 221.268 kb on + strandat 221.354 kb on + strand, within Echvi_0203at 221.354 kb on + strand, within Echvi_0203at 221.354 kb on + strand, within Echvi_0203at 221.354 kb on + strand, within Echvi_0203at 221.444 kb on + strand, within Echvi_0203at 221.444 kb on + strand, within Echvi_0203at 221.444 kb on + strand, within Echvi_0203at 221.500 kb on - strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.558 kb on - strand, within Echvi_0203at 221.558 kb on - strand, within Echvi_0203at 221.588 kb on + strand, within Echvi_0203at 221.693 kb on + strand, within Echvi_0203at 221.693 kb on + strand, within Echvi_0203at 221.693 kb on + strand, within Echvi_0203at 221.694 kb on - strand, within Echvi_0203at 221.793 kb on - strand, within Echvi_0203at 221.797 kb on + strand, within Echvi_0203at 221.915 kb on + strand, within Echvi_0203

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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218,555 - Echvi_0201 0.22 -0.0
218,565 - Echvi_0201 0.23 -1.7
218,590 + Echvi_0201 0.25 -0.9
218,659 + Echvi_0201 0.31 -1.2
218,697 - Echvi_0201 0.34 -2.0
218,707 - Echvi_0201 0.35 +0.0
218,707 - Echvi_0201 0.35 -1.6
218,718 - Echvi_0201 0.36 -2.3
218,847 - Echvi_0201 0.48 -2.4
218,847 - Echvi_0201 0.48 -1.1
218,847 - Echvi_0201 0.48 -3.4
218,954 + Echvi_0201 0.57 -2.1
218,954 + Echvi_0201 0.57 -2.5
218,978 - Echvi_0201 0.60 -1.9
219,191 + Echvi_0201 0.79 -1.0
219,196 + Echvi_0201 0.79 -3.0
219,333 - -1.7
219,345 - -3.0
219,347 + -1.6
219,453 - -2.6
219,453 - -0.5
219,520 + +0.7
219,567 - +0.4
219,647 - -1.0
219,648 + -0.8
219,648 + +0.8
219,729 + Echvi_0202 0.12 -0.4
219,729 + Echvi_0202 0.12 +0.6
219,730 - Echvi_0202 0.12 -1.0
219,730 - Echvi_0202 0.12 -0.1
219,730 - Echvi_0202 0.12 +1.2
219,891 - Echvi_0202 0.23 -1.4
219,892 + Echvi_0202 0.23 -0.2
219,893 - Echvi_0202 0.23 -0.1
219,993 + Echvi_0202 0.30 -0.1
219,994 - Echvi_0202 0.30 -0.3
219,994 - Echvi_0202 0.30 -0.6
219,994 - Echvi_0202 0.30 -0.9
219,995 + Echvi_0202 0.30 -0.5
220,163 + Echvi_0202 0.41 -0.1
220,284 - Echvi_0202 0.49 +1.0
220,288 - Echvi_0202 0.49 -0.4
220,320 - Echvi_0202 0.51 -0.2
220,320 - Echvi_0202 0.51 +0.1
220,338 + Echvi_0202 0.52 +0.1
220,416 - Echvi_0202 0.57 -1.3
220,439 + Echvi_0202 0.59 -1.5
220,439 + Echvi_0202 0.59 -0.2
220,549 + Echvi_0202 0.66 -0.6
220,581 + Echvi_0202 0.68 -1.5
220,726 - Echvi_0202 0.78 -0.5
220,749 + Echvi_0202 0.79 -1.1
220,800 + Echvi_0202 0.83 -0.9
220,800 + Echvi_0202 0.83 -1.5
220,805 + Echvi_0202 0.83 -0.2
220,806 - Echvi_0202 0.83 -0.2
220,807 + Echvi_0202 0.83 -0.9
220,855 + Echvi_0202 0.86 +0.5
220,882 + Echvi_0202 0.88 +0.4
220,883 - Echvi_0202 0.88 -2.0
220,883 - Echvi_0202 0.88 -1.7
220,883 - Echvi_0202 0.88 -0.4
220,901 + Echvi_0202 0.89 -0.4
220,902 - Echvi_0202 0.89 -1.2
220,902 - Echvi_0202 0.89 +0.4
220,903 + Echvi_0202 0.89 +0.0
220,903 + Echvi_0202 0.89 -0.6
220,904 - Echvi_0202 0.89 -0.5
220,941 - -0.4
220,990 - -1.6
221,013 - -1.6
221,033 + -0.8
221,035 + -1.0
221,036 - -1.0
221,066 + -0.5
221,094 - +0.5
221,118 - -1.4
221,118 - -0.3
221,268 + -1.4
221,268 + -1.9
221,354 + Echvi_0203 0.19 +2.6
221,354 + Echvi_0203 0.19 -2.8
221,354 + Echvi_0203 0.19 -0.7
221,354 + Echvi_0203 0.19 +0.7
221,444 + Echvi_0203 0.29 -0.9
221,444 + Echvi_0203 0.29 -1.6
221,444 + Echvi_0203 0.29 +0.7
221,500 - Echvi_0203 0.35 -0.2
221,557 + Echvi_0203 0.42 -0.8
221,557 + Echvi_0203 0.42 +1.1
221,557 + Echvi_0203 0.42 -0.5
221,557 + Echvi_0203 0.42 -0.9
221,558 - Echvi_0203 0.42 -0.1
221,558 - Echvi_0203 0.42 +1.2
221,588 + Echvi_0203 0.45 +0.4
221,693 + Echvi_0203 0.57 +0.5
221,693 + Echvi_0203 0.57 +3.3
221,693 + Echvi_0203 0.57 +0.4
221,694 - Echvi_0203 0.57 -0.9
221,793 - Echvi_0203 0.68 -1.7
221,797 + Echvi_0203 0.69 +0.5
221,915 + Echvi_0203 0.82 -1.7

Or see this region's nucleotide sequence