Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0200 and Echvi_0201 are separated by 432 nucleotides Echvi_0201 and Echvi_0202 are separated by 110 nucleotides
Echvi_0200: Echvi_0200 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 215,464 to 217,878
_0200
Echvi_0201: Echvi_0201 - alanine dehydrogenase, at 218,311 to 219,429
_0201
Echvi_0202: Echvi_0202 - histidine ammonia-lyase, at 219,540 to 221,066
_0202
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.951 kb on + strand at 218.237 kb on + strand at 218.238 kb on - strand at 218.270 kb on + strand at 218.272 kb on + strand at 218.272 kb on + strand at 218.272 kb on + strand at 218.272 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.287 kb on + strand at 218.287 kb on + strand at 218.287 kb on + strand at 218.287 kb on + strand at 218.290 kb on + strand at 218.408 kb on + strand at 218.409 kb on - strand at 218.409 kb on - strand at 218.409 kb on - strand at 218.410 kb on + strand at 218.459 kb on - strand, within Echvi_0201 at 218.504 kb on - strand, within Echvi_0201 at 218.555 kb on - strand, within Echvi_0201 at 218.565 kb on - strand, within Echvi_0201 at 218.590 kb on + strand, within Echvi_0201 at 218.659 kb on + strand, within Echvi_0201 at 218.697 kb on - strand, within Echvi_0201 at 218.707 kb on - strand, within Echvi_0201 at 218.707 kb on - strand, within Echvi_0201 at 218.718 kb on - strand, within Echvi_0201 at 218.847 kb on - strand, within Echvi_0201 at 218.847 kb on - strand, within Echvi_0201 at 218.847 kb on - strand, within Echvi_0201 at 218.954 kb on + strand, within Echvi_0201 at 218.954 kb on + strand, within Echvi_0201 at 218.978 kb on - strand, within Echvi_0201 at 219.191 kb on + strand, within Echvi_0201 at 219.196 kb on + strand, within Echvi_0201 at 219.333 kb on - strand at 219.345 kb on - strand at 219.347 kb on + strand at 219.453 kb on - strand at 219.453 kb on - strand at 219.520 kb on + strand at 219.567 kb on - strand at 219.647 kb on - strand at 219.648 kb on + strand at 219.648 kb on + strand at 219.729 kb on + strand, within Echvi_0202 at 219.729 kb on + strand, within Echvi_0202 at 219.730 kb on - strand, within Echvi_0202 at 219.730 kb on - strand, within Echvi_0202 at 219.730 kb on - strand, within Echvi_0202 at 219.891 kb on - strand, within Echvi_0202 at 219.892 kb on + strand, within Echvi_0202 at 219.893 kb on - strand, within Echvi_0202 at 219.993 kb on + strand, within Echvi_0202 at 219.994 kb on - strand, within Echvi_0202 at 219.994 kb on - strand, within Echvi_0202 at 219.994 kb on - strand, within Echvi_0202 at 219.995 kb on + strand, within Echvi_0202 at 220.163 kb on + strand, within Echvi_0202 at 220.284 kb on - strand, within Echvi_0202 at 220.288 kb on - strand, within Echvi_0202 at 220.320 kb on - strand, within Echvi_0202 at 220.320 kb on - strand, within Echvi_0202 at 220.338 kb on + strand, within Echvi_0202 at 220.416 kb on - strand, within Echvi_0202
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 217,879 - +0.6 217,879 - -1.0 217,879 - +1.2 217,951 + -0.1 218,237 + +2.0 218,238 - -0.9 218,270 + -0.2 218,272 + -0.0 218,272 + -1.1 218,272 + -2.7 218,272 + -0.2 218,283 + -0.6 218,283 + +1.0 218,283 + +0.3 218,287 + +1.0 218,287 + +0.6 218,287 + -0.0 218,287 + +0.5 218,290 + -1.1 218,408 + -2.0 218,409 - -1.9 218,409 - -2.1 218,409 - -0.9 218,410 + -1.2 218,459 - Echvi_0201 0.13 -0.7 218,504 - Echvi_0201 0.17 -0.9 218,555 - Echvi_0201 0.22 -0.0 218,565 - Echvi_0201 0.23 -1.7 218,590 + Echvi_0201 0.25 -0.9 218,659 + Echvi_0201 0.31 -1.2 218,697 - Echvi_0201 0.34 -2.0 218,707 - Echvi_0201 0.35 +0.0 218,707 - Echvi_0201 0.35 -1.6 218,718 - Echvi_0201 0.36 -2.3 218,847 - Echvi_0201 0.48 -2.4 218,847 - Echvi_0201 0.48 -1.1 218,847 - Echvi_0201 0.48 -3.4 218,954 + Echvi_0201 0.57 -2.1 218,954 + Echvi_0201 0.57 -2.5 218,978 - Echvi_0201 0.60 -1.9 219,191 + Echvi_0201 0.79 -1.0 219,196 + Echvi_0201 0.79 -3.0 219,333 - -1.7 219,345 - -3.0 219,347 + -1.6 219,453 - -2.6 219,453 - -0.5 219,520 + +0.7 219,567 - +0.4 219,647 - -1.0 219,648 + -0.8 219,648 + +0.8 219,729 + Echvi_0202 0.12 -0.4 219,729 + Echvi_0202 0.12 +0.6 219,730 - Echvi_0202 0.12 -1.0 219,730 - Echvi_0202 0.12 -0.1 219,730 - Echvi_0202 0.12 +1.2 219,891 - Echvi_0202 0.23 -1.4 219,892 + Echvi_0202 0.23 -0.2 219,893 - Echvi_0202 0.23 -0.1 219,993 + Echvi_0202 0.30 -0.1 219,994 - Echvi_0202 0.30 -0.3 219,994 - Echvi_0202 0.30 -0.6 219,994 - Echvi_0202 0.30 -0.9 219,995 + Echvi_0202 0.30 -0.5 220,163 + Echvi_0202 0.41 -0.1 220,284 - Echvi_0202 0.49 +1.0 220,288 - Echvi_0202 0.49 -0.4 220,320 - Echvi_0202 0.51 -0.2 220,320 - Echvi_0202 0.51 +0.1 220,338 + Echvi_0202 0.52 +0.1 220,416 - Echvi_0202 0.57 -1.3
Or see this region's nucleotide sequence