Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0160 and Echvi_0161 are separated by 196 nucleotides Echvi_0161 and Echvi_0162 are separated by 46 nucleotides
Echvi_0160: Echvi_0160 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 162,734 to 164,317
_0160
Echvi_0161: Echvi_0161 - Exopolyphosphatase, at 164,514 to 165,479
_0161
Echvi_0162: Echvi_0162 - Malate/L-lactate dehydrogenases, at 165,526 to 166,602
_0162
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.548 kb on + strand, within Echvi_0160 at 163.548 kb on + strand, within Echvi_0160 at 163.549 kb on - strand, within Echvi_0160 at 163.549 kb on - strand, within Echvi_0160 at 163.558 kb on + strand, within Echvi_0160 at 163.627 kb on + strand, within Echvi_0160 at 163.627 kb on + strand, within Echvi_0160 at 163.711 kb on + strand, within Echvi_0160 at 163.712 kb on - strand, within Echvi_0160 at 163.713 kb on + strand, within Echvi_0160 at 163.713 kb on + strand, within Echvi_0160 at 163.713 kb on + strand, within Echvi_0160 at 163.714 kb on - strand, within Echvi_0160 at 163.842 kb on - strand, within Echvi_0160 at 163.842 kb on - strand, within Echvi_0160 at 163.844 kb on - strand, within Echvi_0160 at 164.000 kb on - strand, within Echvi_0160 at 164.014 kb on - strand, within Echvi_0160 at 164.014 kb on - strand, within Echvi_0160 at 164.019 kb on + strand, within Echvi_0160 at 164.019 kb on + strand, within Echvi_0160 at 164.020 kb on - strand, within Echvi_0160 at 164.020 kb on - strand, within Echvi_0160 at 164.073 kb on + strand, within Echvi_0160 at 164.074 kb on - strand, within Echvi_0160 at 164.076 kb on + strand, within Echvi_0160 at 164.102 kb on - strand, within Echvi_0160 at 164.164 kb on + strand at 164.204 kb on - strand at 164.290 kb on + strand at 164.290 kb on + strand at 164.293 kb on - strand at 164.293 kb on - strand at 164.331 kb on + strand at 164.332 kb on - strand at 164.342 kb on + strand at 164.342 kb on + strand at 164.343 kb on - strand at 164.343 kb on - strand at 164.347 kb on + strand at 164.347 kb on + strand at 164.347 kb on + strand at 164.348 kb on - strand at 164.408 kb on + strand at 164.429 kb on + strand at 164.569 kb on + strand at 164.575 kb on + strand at 164.746 kb on - strand, within Echvi_0161 at 164.797 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 165.027 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.371 kb on - strand, within Echvi_0161 at 165.516 kb on - strand at 165.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 163,548 + Echvi_0160 0.51 +1.4 163,548 + Echvi_0160 0.51 -0.8 163,549 - Echvi_0160 0.51 +0.8 163,549 - Echvi_0160 0.51 -0.9 163,558 + Echvi_0160 0.52 -0.8 163,627 + Echvi_0160 0.56 +0.9 163,627 + Echvi_0160 0.56 -2.4 163,711 + Echvi_0160 0.62 +1.4 163,712 - Echvi_0160 0.62 +0.1 163,713 + Echvi_0160 0.62 -1.6 163,713 + Echvi_0160 0.62 -0.9 163,713 + Echvi_0160 0.62 +1.3 163,714 - Echvi_0160 0.62 -0.2 163,842 - Echvi_0160 0.70 -0.6 163,842 - Echvi_0160 0.70 -2.9 163,844 - Echvi_0160 0.70 -2.7 164,000 - Echvi_0160 0.80 -0.2 164,014 - Echvi_0160 0.81 -0.5 164,014 - Echvi_0160 0.81 +0.1 164,019 + Echvi_0160 0.81 +0.1 164,019 + Echvi_0160 0.81 +0.7 164,020 - Echvi_0160 0.81 -0.3 164,020 - Echvi_0160 0.81 -2.4 164,073 + Echvi_0160 0.85 +0.8 164,074 - Echvi_0160 0.85 -0.2 164,076 + Echvi_0160 0.85 -1.1 164,102 - Echvi_0160 0.86 -0.8 164,164 + +0.3 164,204 - -1.9 164,290 + -2.1 164,290 + -0.4 164,293 - -0.2 164,293 - -0.4 164,331 + -1.4 164,332 - -2.3 164,342 + -1.4 164,342 + -0.3 164,343 - -0.6 164,343 - -1.8 164,347 + -0.7 164,347 + -2.5 164,347 + -1.1 164,348 - -2.2 164,408 + +2.4 164,429 + +0.5 164,569 + +0.8 164,575 + +1.6 164,746 - Echvi_0161 0.24 +0.9 164,797 + Echvi_0161 0.29 +1.5 164,868 + Echvi_0161 0.37 +2.5 164,868 + Echvi_0161 0.37 +1.0 165,027 + Echvi_0161 0.53 +2.6 165,088 + Echvi_0161 0.59 +1.4 165,088 + Echvi_0161 0.59 +1.4 165,110 + Echvi_0161 0.62 +1.0 165,110 + Echvi_0161 0.62 +0.3 165,174 + Echvi_0161 0.68 +0.4 165,174 + Echvi_0161 0.68 +0.8 165,174 + Echvi_0161 0.68 -1.2 165,175 - Echvi_0161 0.68 -0.1 165,175 - Echvi_0161 0.68 -0.8 165,175 - Echvi_0161 0.68 -0.4 165,177 + Echvi_0161 0.69 +2.2 165,177 + Echvi_0161 0.69 +0.9 165,178 - Echvi_0161 0.69 -0.4 165,178 - Echvi_0161 0.69 +0.4 165,370 + Echvi_0161 0.89 -0.2 165,370 + Echvi_0161 0.89 +1.8 165,371 - Echvi_0161 0.89 +0.7 165,516 - +1.9 165,517 + -1.2
Or see this region's nucleotide sequence