Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0154 and Echvi_0155 are separated by 0 nucleotides Echvi_0155 and Echvi_0156 are separated by 8 nucleotides Echvi_0156 and Echvi_0157 overlap by 8 nucleotides Echvi_0157 and Echvi_0158 are separated by 2 nucleotides
Echvi_0154: Echvi_0154 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 156,184 to 157,167
_0154
Echvi_0155: Echvi_0155 - ketose-bisphosphate aldolases, at 157,168 to 157,992
_0155
Echvi_0156: Echvi_0156 - Sugar kinases, ribokinase family, at 158,001 to 158,945
_0156
Echvi_0157: Echvi_0157 - hexose kinase, 1-phosphofructokinase family, at 158,938 to 159,861
_0157
Echvi_0158: Echvi_0158 - Predicted phosphosugar isomerases, at 159,864 to 161,036
_0158
Position (kb) 158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 157.133 kb on - strand at 157.133 kb on - strand at 157.138 kb on + strand at 157.151 kb on - strand at 157.152 kb on + strand at 157.152 kb on + strand at 157.152 kb on + strand at 157.199 kb on + strand at 157.200 kb on - strand at 157.276 kb on + strand, within Echvi_0155 at 157.277 kb on - strand, within Echvi_0155 at 157.592 kb on + strand, within Echvi_0155 at 157.592 kb on + strand, within Echvi_0155 at 157.592 kb on + strand, within Echvi_0155 at 157.609 kb on + strand, within Echvi_0155 at 157.622 kb on + strand, within Echvi_0155 at 157.626 kb on + strand, within Echvi_0155 at 157.626 kb on + strand, within Echvi_0155 at 157.661 kb on - strand, within Echvi_0155 at 157.661 kb on - strand, within Echvi_0155 at 157.784 kb on + strand, within Echvi_0155 at 157.785 kb on - strand, within Echvi_0155 at 157.835 kb on + strand, within Echvi_0155 at 158.002 kb on + strand at 158.041 kb on - strand at 158.049 kb on + strand at 158.057 kb on + strand at 158.058 kb on - strand at 158.084 kb on + strand at 158.160 kb on - strand, within Echvi_0156 at 158.200 kb on - strand, within Echvi_0156 at 158.215 kb on - strand, within Echvi_0156 at 158.327 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.380 kb on - strand, within Echvi_0156 at 158.381 kb on + strand at 158.381 kb on + strand, within Echvi_0156 at 158.381 kb on + strand, within Echvi_0156 at 158.382 kb on - strand, within Echvi_0156 at 158.382 kb on - strand, within Echvi_0156 at 158.382 kb on - strand, within Echvi_0156 at 158.385 kb on + strand, within Echvi_0156 at 158.385 kb on + strand, within Echvi_0156 at 158.386 kb on - strand, within Echvi_0156 at 158.496 kb on - strand, within Echvi_0156 at 158.498 kb on + strand, within Echvi_0156 at 158.611 kb on + strand, within Echvi_0156 at 158.615 kb on + strand, within Echvi_0156 at 158.615 kb on + strand, within Echvi_0156 at 158.615 kb on + strand, within Echvi_0156 at 158.639 kb on - strand, within Echvi_0156 at 158.666 kb on + strand, within Echvi_0156 at 158.666 kb on + strand, within Echvi_0156 at 158.666 kb on + strand, within Echvi_0156 at 158.965 kb on + strand at 158.966 kb on - strand at 158.998 kb on - strand at 158.999 kb on + strand at 159.001 kb on + strand at 159.001 kb on + strand at 159.001 kb on + strand at 159.077 kb on + strand, within Echvi_0157 at 159.100 kb on + strand, within Echvi_0157 at 159.360 kb on + strand, within Echvi_0157 at 159.556 kb on - strand, within Echvi_0157 at 159.591 kb on - strand, within Echvi_0157 at 159.613 kb on + strand, within Echvi_0157 at 159.705 kb on + strand, within Echvi_0157 at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.825 kb on + strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.829 kb on + strand at 159.829 kb on + strand at 159.829 kb on + strand at 159.875 kb on + strand at 159.875 kb on + strand at 159.877 kb on + strand at 159.878 kb on - strand at 159.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 157,133 - -1.6 157,133 - +0.0 157,138 + +0.5 157,151 - -0.1 157,152 + +0.4 157,152 + +0.0 157,152 + -1.2 157,199 + +0.9 157,200 - +0.4 157,276 + Echvi_0155 0.13 -0.1 157,277 - Echvi_0155 0.13 +1.9 157,592 + Echvi_0155 0.51 -0.5 157,592 + Echvi_0155 0.51 +1.2 157,592 + Echvi_0155 0.51 -0.2 157,609 + Echvi_0155 0.53 +0.5 157,622 + Echvi_0155 0.55 +0.5 157,626 + Echvi_0155 0.56 -0.7 157,626 + Echvi_0155 0.56 +0.4 157,661 - Echvi_0155 0.60 +3.8 157,661 - Echvi_0155 0.60 +2.6 157,784 + Echvi_0155 0.75 -1.1 157,785 - Echvi_0155 0.75 +2.3 157,835 + Echvi_0155 0.81 -0.5 158,002 + -0.4 158,041 - +0.4 158,049 + -0.4 158,057 + -0.8 158,058 - -1.1 158,084 + -0.3 158,160 - Echvi_0156 0.17 +0.4 158,200 - Echvi_0156 0.21 -1.7 158,215 - Echvi_0156 0.23 -0.8 158,327 + Echvi_0156 0.34 -0.3 158,379 + Echvi_0156 0.40 -1.3 158,379 + Echvi_0156 0.40 +1.2 158,379 + Echvi_0156 0.40 -1.3 158,379 + Echvi_0156 0.40 -0.5 158,379 + Echvi_0156 0.40 -1.8 158,380 - Echvi_0156 0.40 -2.4 158,381 + +0.4 158,381 + Echvi_0156 0.40 +0.0 158,381 + Echvi_0156 0.40 +1.4 158,382 - Echvi_0156 0.40 -1.1 158,382 - Echvi_0156 0.40 -1.2 158,382 - Echvi_0156 0.40 -2.4 158,385 + Echvi_0156 0.41 -0.3 158,385 + Echvi_0156 0.41 +1.2 158,386 - Echvi_0156 0.41 -2.0 158,496 - Echvi_0156 0.52 -0.4 158,498 + Echvi_0156 0.53 +1.9 158,611 + Echvi_0156 0.65 -0.7 158,615 + Echvi_0156 0.65 +0.5 158,615 + Echvi_0156 0.65 +0.5 158,615 + Echvi_0156 0.65 +0.1 158,639 - Echvi_0156 0.68 -0.5 158,666 + Echvi_0156 0.70 +0.1 158,666 + Echvi_0156 0.70 -0.6 158,666 + Echvi_0156 0.70 +0.5 158,965 + -1.6 158,966 - +0.6 158,998 - +0.5 158,999 + +1.6 159,001 + +0.7 159,001 + +0.6 159,001 + +1.2 159,077 + Echvi_0157 0.15 -1.5 159,100 + Echvi_0157 0.18 +0.9 159,360 + Echvi_0157 0.46 -1.2 159,556 - Echvi_0157 0.67 -1.1 159,591 - Echvi_0157 0.71 -2.4 159,613 + Echvi_0157 0.73 -0.1 159,705 + Echvi_0157 0.83 +0.2 159,821 + -1.8 159,821 + -0.6 159,821 + +1.1 159,821 + -1.1 159,825 + +0.8 159,826 - +1.5 159,826 - -1.0 159,826 - +0.4 159,826 - -2.5 159,826 - -1.1 159,829 + +1.0 159,829 + -0.1 159,829 + -0.1 159,875 + -1.0 159,875 + -0.3 159,877 + +0.4 159,878 - +2.4 159,878 - -0.0
Or see this region's nucleotide sequence