Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0133

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
132,167	-				+1.9
132,167	-				+2.9
132,167	-				-0.3
132,167	-				-0.3
132,167	-				-0.4
132,225	+				-0.3
132,242	+				+0.7
132,280	-				-0.3
132,323	-				+1.4
132,354	+				+0.9
132,354	+				-1.0
132,355	-				-1.5
132,355	-				+1.9
132,355	-				-2.1
132,358	+				-1.2
132,359	-				-0.8
132,359	-				-1.4
132,359	-				-0.1
132,359	-				-0.5
132,362	-				-0.4
132,368	+				-1.2
132,377	+				-2.0
132,391	-				-0.6
132,399	+				-1.8
132,399	+				-0.5
132,399	+				-1.3
132,399	+				-0.1
132,548	-		Echvi_0133	0.15	+0.0
132,549	+		Echvi_0133	0.15	-0.1
132,549	+		Echvi_0133	0.15	-2.3
132,550	-		Echvi_0133	0.15	+1.2
132,550	-		Echvi_0133	0.15	-1.1
132,550	-		Echvi_0133	0.15	+0.1
132,550	-		Echvi_0133	0.15	-1.3
132,550	-		Echvi_0133	0.15	-0.9
132,560	-		Echvi_0133	0.16	-0.1
132,560	-		Echvi_0133	0.16	-1.5
132,640	-		Echvi_0133	0.21	-1.1
132,661	-		Echvi_0133	0.22	-0.8
132,696	+		Echvi_0133	0.25	+0.9
132,696	+		Echvi_0133	0.25	-1.5
132,697	-		Echvi_0133	0.25	+0.4
132,830	+		Echvi_0133	0.33	-0.6
132,830	+		Echvi_0133	0.33	-2.6
132,830	+		Echvi_0133	0.33	-1.3
132,830	+		Echvi_0133	0.33	-2.0
132,830	+		Echvi_0133	0.33	-1.8
132,831	-		Echvi_0133	0.33	-1.1
132,831	-		Echvi_0133	0.33	-1.6
132,834	+		Echvi_0133	0.33	-1.7
132,834	+		Echvi_0133	0.33	+0.4
132,834	+		Echvi_0133	0.33	+0.8
132,835	-		Echvi_0133	0.33	-0.1
132,835	-		Echvi_0133	0.33	-0.1
132,835	-		Echvi_0133	0.33	-1.1
132,835	-		Echvi_0133	0.33	-0.9
132,891	+		Echvi_0133	0.37	+0.2
132,899	+		Echvi_0133	0.38	+0.1
132,918	+		Echvi_0133	0.39	-1.3
132,918	+		Echvi_0133	0.39	-0.4
132,918	+		Echvi_0133	0.39	+1.5
132,919	-		Echvi_0133	0.39	-1.2
132,993	+		Echvi_0133	0.44	-1.1
132,994	-		Echvi_0133	0.44	-2.9
132,994	-		Echvi_0133	0.44	-0.2
133,036	-		Echvi_0133	0.46	-1.2
133,036	-		Echvi_0133	0.46	-1.4
133,036	-		Echvi_0133	0.46	-0.1
133,040	+		Echvi_0133	0.47	+0.9
133,040	+		Echvi_0133	0.47	-1.6
133,040	+		Echvi_0133	0.47	+0.5
133,040	+		Echvi_0133	0.47	-1.5
133,041	-		Echvi_0133	0.47	-0.5
133,041	-		Echvi_0133	0.47	+0.4
133,044	+		Echvi_0133	0.47	-2.9
133,083	+		Echvi_0133	0.49	-0.1
133,083	+		Echvi_0133	0.49	-0.9
133,083	+		Echvi_0133	0.49	-1.1
133,129	+		Echvi_0133	0.52	+0.3
133,179	+		Echvi_0133	0.55	-0.7
133,560	+		Echvi_0133	0.80	+0.1
133,564	-		Echvi_0133	0.80	-0.1
133,571	+		Echvi_0133	0.81	-2.1
133,571	+		Echvi_0133	0.81	-0.4
133,571	+		Echvi_0133	0.81	-1.6
133,572	-		Echvi_0133	0.81	-0.9
133,572	-		Echvi_0133	0.81	-0.2
133,596	+		Echvi_0133	0.82	-2.1
133,596	+		Echvi_0133	0.82	+0.2
133,596	+		Echvi_0133	0.82	-1.4
133,597	-		Echvi_0133	0.82	-0.1
133,597	-		Echvi_0133	0.82	+1.9
133,638	-		Echvi_0133	0.85	-0.6
133,690	-		Echvi_0133	0.88	-1.7
133,690	-				-0.1
133,765	-				-0.1
133,765	-				-1.5
133,765	-				+0.2
133,768	-				+0.0
133,873	-				+0.3
133,912	+		Echvi_0134	0.28	+1.3
133,933	+		Echvi_0134	0.32	+1.3
133,933	+		Echvi_0134	0.32	-0.3
133,934	-		Echvi_0134	0.32	-0.7
133,963	+		Echvi_0134	0.38	+0.8
134,003	-		Echvi_0134	0.45	-0.1
134,003	-		Echvi_0134	0.45	-1.1
134,013	+		Echvi_0134	0.47	-0.9
134,034	-		Echvi_0134	0.51	-1.5
134,034	-		Echvi_0134	0.51	+0.4
134,034	-		Echvi_0134	0.51	+0.9
134,220	-		Echvi_0134	0.87	+0.9
134,237	+				-0.9
134,279	+				-0.9
134,279	+				-0.6
134,279	+				-0.2
134,279	+				-0.7
134,279	+				+0.7
134,280	-				+0.2
134,280	-				-1.1
134,356	+				+0.4
134,359	+		Echvi_0135	0.10	-0.9
134,434	-		Echvi_0135	0.18	-0.0
134,514	-		Echvi_0135	0.26	+1.5
134,528	+		Echvi_0135	0.27	-0.1
134,556	+		Echvi_0135	0.30	-0.2
134,635	-		Echvi_0135	0.38	-0.6
134,635	-		Echvi_0135	0.38	-0.0
134,690	+		Echvi_0135	0.43	-0.3
134,859	-		Echvi_0135	0.60	-2.6