Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0076 and Echvi_0077 are separated by 6 nucleotides Echvi_0077 and Echvi_0078 are separated by 61 nucleotides Echvi_0078 and Echvi_0079 are separated by 600 nucleotides Echvi_0079 and Echvi_0080 are separated by 207 nucleotides
Echvi_0076: Echvi_0076 - Biopolymer transport protein, at 78,229 to 78,861
_0076
Echvi_0077: Echvi_0077 - hypothetical protein, at 78,868 to 79,197
_0077
Echvi_0078: Echvi_0078 - Biopolymer transport proteins, at 79,259 to 80,074
_0078
Echvi_0079: Echvi_0079 - tRNA, at 80,675 to 80,765
_0079
Echvi_0080: Echvi_0080 - L-asparaginases, type I, at 80,973 to 82,049
_0080
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 79.247 kb on - strand at 80.219 kb on - strand at 80.225 kb on + strand at 80.225 kb on + strand at 80.244 kb on + strand at 80.245 kb on - strand at 80.263 kb on - strand at 80.278 kb on + strand at 80.278 kb on + strand at 80.282 kb on + strand at 80.342 kb on + strand at 80.342 kb on + strand at 80.343 kb on - strand at 80.383 kb on + strand at 80.384 kb on - strand at 80.384 kb on - strand at 80.474 kb on - strand at 80.531 kb on + strand at 80.672 kb on + strand at 80.673 kb on - strand at 80.721 kb on - strand, within Echvi_0079 at 80.798 kb on - strand at 80.838 kb on + strand at 80.839 kb on - strand at 80.961 kb on - strand at 81.057 kb on + strand at 81.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 79,247 - +1.4 80,219 - -0.4 80,225 + +0.4 80,225 + +1.1 80,244 + +1.0 80,245 - -0.4 80,263 - -1.1 80,278 + +0.5 80,278 + +0.1 80,282 + +0.9 80,342 + +0.3 80,342 + +2.8 80,343 - -0.7 80,383 + +0.4 80,384 - +0.3 80,384 - -1.8 80,474 - +2.3 80,531 + +0.3 80,672 + +0.6 80,673 - -0.5 80,721 - Echvi_0079 0.51 -0.8 80,798 - +0.4 80,838 + +1.1 80,839 - +1.4 80,961 - -0.4 81,057 + -2.3 81,057 + -2.4
Or see this region's nucleotide sequence