Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0009

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
5,508	-		Echvi_0007	0.37	+1.9
5,508	-		Echvi_0007	0.37	-1.1
5,661	-		Echvi_0007	0.70	-0.1
5,706	+		Echvi_0007	0.80	+0.0
5,724	-		Echvi_0007	0.83	+0.7
5,724	-		Echvi_0007	0.83	+0.1
5,730	-		Echvi_0007	0.85	+0.4
5,799	-				+1.3
5,802	+				+0.9
5,818	+				-0.4
5,818	+				+1.7
5,894	-		Echvi_0008	0.20	+1.0
5,936	+		Echvi_0008	0.31	+1.2
5,937	-		Echvi_0008	0.31	+1.4
5,937	-		Echvi_0008	0.31	+1.4
5,938	+		Echvi_0008	0.31	+1.6
6,014	+		Echvi_0008	0.50	+1.9
6,087	+		Echvi_0008	0.68	+1.3
6,242	+				+0.2
6,242	+				+1.9
6,242	+				+0.3
6,243	-				+0.5
6,243	-				+0.9
6,243	-				+1.1
6,243	-				-1.0
6,244	+				+0.3
6,245	-				-0.4
6,416	+				-0.2
6,417	-				-1.6
6,482	-				-1.6
6,488	-				-1.2
6,488	-				-1.4
6,488	-				+1.1
6,496	+				+0.4
6,497	-				-1.1
6,514	-				-3.0
6,533	+				-1.0
6,533	+				+0.1
6,635	-		Echvi_0009	0.16	-1.1
6,641	-		Echvi_0009	0.17	-1.1
6,648	+		Echvi_0009	0.18	+0.5
6,649	-		Echvi_0009	0.18	-1.6
6,716	+		Echvi_0009	0.26	-0.7
6,728	-		Echvi_0009	0.27	-2.4
6,737	+		Echvi_0009	0.28	-0.6
6,737	+		Echvi_0009	0.28	-0.1
6,737	+		Echvi_0009	0.28	-0.7
6,850	+		Echvi_0009	0.42	+0.2
6,851	-		Echvi_0009	0.42	-0.9
6,870	-		Echvi_0009	0.45	-1.4
6,873	+		Echvi_0009	0.45	-1.4
6,874	-		Echvi_0009	0.45	-0.4
6,887	-		Echvi_0009	0.47	-2.1
6,906	+		Echvi_0009	0.49	-2.5
6,930	-		Echvi_0009	0.52	-1.5
6,942	+		Echvi_0009	0.53	+0.1
6,943	-		Echvi_0009	0.53	+0.9
6,958	-		Echvi_0009	0.55	-0.2
6,961	+		Echvi_0009	0.56	-1.9
6,961	+		Echvi_0009	0.56	-2.5
6,962	-		Echvi_0009	0.56	-1.0
6,962	-		Echvi_0009	0.56	-0.6
6,962	-		Echvi_0009	0.56	-2.0
7,003	-		Echvi_0009	0.61	-0.9
7,155	-		Echvi_0009	0.79	-1.3
7,191	-		Echvi_0009	0.84	-0.2
7,211	+		Echvi_0009	0.86	-2.4
7,212	-		Echvi_0009	0.86	-2.3
7,226	+		Echvi_0009	0.88	-1.6
7,261	+				+1.3
7,262	-				-1.9
7,262	-				-1.4
7,282	+				-1.1
7,352	-				-0.9
7,354	+				-0.6
7,354	+				-0.4
7,355	-				+1.6
7,355	-				-0.2
7,355	-				+1.7
7,355	-				+0.0
7,356	+				+1.1
7,356	+				-1.0
7,357	-				-1.9
7,357	-				-0.9
7,357	-				-1.8
7,357	-				-1.1
7,357	-				+0.7
7,357	-				-1.7
7,357	-				+0.2
7,407	+				-1.1
7,408	-				+0.1
7,429	+				-0.6
7,430	-				+0.6
7,430	-				-1.2
7,433	+				-0.1
7,433	+				+0.4
7,434	-				+0.6
7,474	+				-1.2
7,474	+				+0.5
7,474	+				-0.5
7,475	-				+0.0
7,475	-				-0.3
7,479	+				-1.4
7,544	-		Echvi_0010	0.23	-0.5
7,632	+		Echvi_0010	0.43	+0.2
7,632	+		Echvi_0010	0.43	-0.1
7,633	-		Echvi_0010	0.44	-2.6
7,640	+		Echvi_0010	0.45	-0.4
7,652	+		Echvi_0010	0.48	-0.4
7,676	+		Echvi_0010	0.54	-0.4
7,676	+		Echvi_0010	0.54	-0.2
7,676	+		Echvi_0010	0.54	+1.2
7,676	+		Echvi_0010	0.54	-1.8
7,676	+		Echvi_0010	0.54	+1.9
7,677	-		Echvi_0010	0.54	-1.7
7,677	-		Echvi_0010	0.54	-1.2
7,677	-		Echvi_0010	0.54	+0.1
7,679	-		Echvi_0010	0.54	-1.6
7,679	-		Echvi_0010	0.54	-1.8
7,679	-		Echvi_0010	0.54	-0.3
7,737	+		Echvi_0010	0.68	+0.6
7,738	-		Echvi_0010	0.68	-0.5
7,741	+		Echvi_0010	0.69	+0.4
7,742	-		Echvi_0010	0.69	+0.9
7,742	-		Echvi_0010	0.69	+0.5
7,775	-		Echvi_0010	0.76	-1.0
7,805	+		Echvi_0010	0.83	+0.3
7,820	+		Echvi_0010	0.87	-0.6
7,823	+		Echvi_0010	0.87	+0.2
7,824	-		Echvi_0010	0.88	+0.9
7,851	+				-0.5
7,851	+				+0.9
7,851	+				-0.5
7,852	-				+0.4
7,857	+				-0.0
7,858	-				+0.0
7,858	-				-0.2
7,858	-				-1.4
7,862	+				+0.2
7,883	+				-0.3
7,884	-				-0.8
7,884	-				+1.9
7,886	+				-0.7
7,887	-				+0.9
7,898	+				-0.6
7,898	+				-1.0
7,898	+				+1.1
7,921	-				-1.7
7,929	+				-0.1
7,976	-				-0.4
7,983	-				-1.3
8,095	-		Echvi_0011	0.16	-1.1
8,111	-		Echvi_0011	0.17	+0.2
8,135	-		Echvi_0011	0.19	-1.4
8,135	-		Echvi_0011	0.19	+0.3
8,143	-		Echvi_0011	0.20	-0.2
8,153	-		Echvi_0011	0.21	-0.8
8,153	-		Echvi_0011	0.21	-0.2
8,153	-		Echvi_0011	0.21	-0.2
8,212	+		Echvi_0011	0.26	-1.0
8,213	-		Echvi_0011	0.26	+0.1
8,222	+		Echvi_0011	0.26	-0.6
8,266	-		Echvi_0011	0.30	-0.6