Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0008

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,891	-		Echvi_0006	0.30	+0.6
4,922	+		Echvi_0006	0.35	+1.6
4,922	+		Echvi_0006	0.35	+0.1
4,922	+		Echvi_0006	0.35	+0.7
4,923	-		Echvi_0006	0.35	+1.0
4,924	+		Echvi_0006	0.35	+1.9
4,925	-		Echvi_0006	0.36	+2.5
4,945	-		Echvi_0006	0.39	+1.7
4,996	+		Echvi_0006	0.46	-0.1
5,033	+		Echvi_0006	0.52	+1.2
5,061	+		Echvi_0006	0.56	+1.6
5,076	-		Echvi_0006	0.58	+1.9
5,259	+				+1.9
5,260	-		Echvi_0006	0.86	+0.4
5,273	-		Echvi_0006	0.88	-1.1
5,434	+		Echvi_0007	0.21	+1.7
5,475	-		Echvi_0007	0.30	+0.4
5,496	+		Echvi_0007	0.34	+0.8
5,496	+		Echvi_0007	0.34	+3.4
5,496	+		Echvi_0007	0.34	-0.5
5,496	+		Echvi_0007	0.34	+1.4
5,497	-		Echvi_0007	0.35	+1.0
5,497	-		Echvi_0007	0.35	+1.9
5,508	-		Echvi_0007	0.37	+1.9
5,508	-		Echvi_0007	0.37	-1.1
5,661	-		Echvi_0007	0.70	-0.1
5,706	+		Echvi_0007	0.80	+0.0
5,724	-		Echvi_0007	0.83	+0.7
5,724	-		Echvi_0007	0.83	+0.1
5,730	-		Echvi_0007	0.85	+0.4
5,799	-				+1.3
5,802	+				+0.9
5,818	+				-0.4
5,818	+				+1.7
5,894	-		Echvi_0008	0.20	+1.0
5,936	+		Echvi_0008	0.31	+1.2
5,937	-		Echvi_0008	0.31	+1.4
5,937	-		Echvi_0008	0.31	+1.4
5,938	+		Echvi_0008	0.31	+1.6
6,014	+		Echvi_0008	0.50	+1.9
6,087	+		Echvi_0008	0.68	+1.3
6,242	+				+0.2
6,242	+				+1.9
6,242	+				+0.3
6,243	-				+0.5
6,243	-				+0.9
6,243	-				+1.1
6,243	-				-1.0
6,244	+				+0.3
6,245	-				-0.4
6,416	+				-0.2
6,417	-				-1.6
6,482	-				-1.6
6,488	-				-1.2
6,488	-				-1.4
6,488	-				+1.1
6,496	+				+0.4
6,497	-				-1.1
6,514	-				-3.0
6,533	+				-1.0
6,533	+				+0.1
6,635	-		Echvi_0009	0.16	-1.1
6,641	-		Echvi_0009	0.17	-1.1
6,648	+		Echvi_0009	0.18	+0.5
6,649	-		Echvi_0009	0.18	-1.6
6,716	+		Echvi_0009	0.26	-0.7
6,728	-		Echvi_0009	0.27	-2.4
6,737	+		Echvi_0009	0.28	-0.6
6,737	+		Echvi_0009	0.28	-0.1
6,737	+		Echvi_0009	0.28	-0.7
6,850	+		Echvi_0009	0.42	+0.2
6,851	-		Echvi_0009	0.42	-0.9
6,870	-		Echvi_0009	0.45	-1.4
6,873	+		Echvi_0009	0.45	-1.4
6,874	-		Echvi_0009	0.45	-0.4
6,887	-		Echvi_0009	0.47	-2.1
6,906	+		Echvi_0009	0.49	-2.5
6,930	-		Echvi_0009	0.52	-1.5
6,942	+		Echvi_0009	0.53	+0.1
6,943	-		Echvi_0009	0.53	+0.9
6,958	-		Echvi_0009	0.55	-0.2
6,961	+		Echvi_0009	0.56	-1.9
6,961	+		Echvi_0009	0.56	-2.5
6,962	-		Echvi_0009	0.56	-1.0
6,962	-		Echvi_0009	0.56	-0.6
6,962	-		Echvi_0009	0.56	-2.0
7,003	-		Echvi_0009	0.61	-0.9
7,155	-		Echvi_0009	0.79	-1.3
7,191	-		Echvi_0009	0.84	-0.2
7,211	+		Echvi_0009	0.86	-2.4
7,212	-		Echvi_0009	0.86	-2.3