Experiment: L-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3811 and Atu3812 are separated by 182 nucleotides Atu3812 and Atu3813 are separated by 262 nucleotides Atu3813 and Atu3814 are separated by 10 nucleotides Atu3814 and Atu3815 are separated by 29 nucleotides
Atu3811: Atu3811 - hydrolase, at 907,774 to 908,418
Atu3811
Atu3812: Atu3812 - hypothetical protein, at 908,601 to 909,008
Atu3812
Atu3813: Atu3813 - 3-oxoacyl-ACP reductase, at 909,271 to 910,017
Atu3813
Atu3814: Atu3814 - hypothetical protein, at 910,028 to 910,357
Atu3814
Atu3815: Atu3815 - GntR family transcriptional regulator, at 910,387 to 911,046
Atu3815
Position (kb) 909
910
911 Strain fitness (log2 ratio) -1
0
1
2 at 908.314 kb on + strand, within Atu3811 at 908.319 kb on + strand, within Atu3811 at 908.322 kb on - strand, within Atu3811 at 908.375 kb on + strand at 908.415 kb on - strand at 908.506 kb on + strand at 908.554 kb on - strand at 908.568 kb on + strand at 908.578 kb on - strand at 908.584 kb on - strand at 908.586 kb on + strand at 908.647 kb on - strand, within Atu3812 at 908.671 kb on + strand, within Atu3812 at 908.671 kb on + strand, within Atu3812 at 908.679 kb on - strand, within Atu3812 at 908.717 kb on + strand, within Atu3812 at 908.872 kb on + strand, within Atu3812 at 908.916 kb on + strand, within Atu3812 at 908.916 kb on + strand, within Atu3812 at 908.916 kb on + strand, within Atu3812 at 908.924 kb on - strand, within Atu3812 at 908.999 kb on - strand at 909.003 kb on + strand at 909.011 kb on - strand at 909.097 kb on + strand at 909.097 kb on + strand at 909.117 kb on + strand at 909.135 kb on - strand at 909.179 kb on + strand at 909.181 kb on + strand at 909.278 kb on + strand at 909.334 kb on - strand at 909.411 kb on + strand, within Atu3813 at 909.517 kb on + strand, within Atu3813 at 909.517 kb on + strand, within Atu3813 at 909.557 kb on + strand, within Atu3813 at 909.571 kb on - strand, within Atu3813 at 909.640 kb on + strand, within Atu3813 at 909.640 kb on + strand, within Atu3813 at 909.711 kb on + strand, within Atu3813 at 909.750 kb on - strand, within Atu3813 at 909.956 kb on - strand at 910.013 kb on + strand at 910.019 kb on - strand at 910.029 kb on - strand at 910.054 kb on + strand at 910.055 kb on - strand at 910.055 kb on - strand at 910.062 kb on - strand, within Atu3814 at 910.062 kb on - strand, within Atu3814 at 910.070 kb on + strand, within Atu3814 at 910.112 kb on - strand, within Atu3814 at 910.245 kb on - strand, within Atu3814 at 910.245 kb on - strand, within Atu3814 at 910.245 kb on - strand, within Atu3814 at 910.245 kb on - strand, within Atu3814 at 910.256 kb on + strand, within Atu3814 at 910.264 kb on - strand, within Atu3814 at 910.286 kb on + strand, within Atu3814 at 910.360 kb on - strand at 910.451 kb on + strand at 910.492 kb on - strand, within Atu3815 at 910.493 kb on - strand, within Atu3815 at 910.493 kb on - strand, within Atu3815 at 910.500 kb on + strand, within Atu3815 at 910.528 kb on - strand, within Atu3815 at 910.564 kb on - strand, within Atu3815 at 910.606 kb on + strand, within Atu3815 at 910.607 kb on - strand, within Atu3815 at 910.634 kb on + strand, within Atu3815 at 910.749 kb on - strand, within Atu3815 at 910.832 kb on + strand, within Atu3815 at 910.849 kb on + strand, within Atu3815 at 910.867 kb on - strand, within Atu3815 at 911.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Xylose (C) remove 908,314 + Atu3811 0.84 -0.2 908,319 + Atu3811 0.84 +0.4 908,322 - Atu3811 0.85 -0.5 908,375 + -0.8 908,415 - +0.1 908,506 + -0.4 908,554 - -0.2 908,568 + +1.3 908,578 - -0.5 908,584 - -1.1 908,586 + -0.0 908,647 - Atu3812 0.11 -0.9 908,671 + Atu3812 0.17 +0.0 908,671 + Atu3812 0.17 -1.4 908,679 - Atu3812 0.19 +0.0 908,717 + Atu3812 0.28 -0.5 908,872 + Atu3812 0.66 +0.0 908,916 + Atu3812 0.77 +1.0 908,916 + Atu3812 0.77 -0.0 908,916 + Atu3812 0.77 -0.2 908,924 - Atu3812 0.79 -0.8 908,999 - +1.1 909,003 + -0.7 909,011 - +0.2 909,097 + -0.3 909,097 + -0.5 909,117 + -0.3 909,135 - +0.1 909,179 + -0.3 909,181 + +0.0 909,278 + -1.0 909,334 - -1.3 909,411 + Atu3813 0.19 -1.4 909,517 + Atu3813 0.33 -1.6 909,517 + Atu3813 0.33 -1.0 909,557 + Atu3813 0.38 -0.9 909,571 - Atu3813 0.40 -1.5 909,640 + Atu3813 0.49 -1.6 909,640 + Atu3813 0.49 -1.7 909,711 + Atu3813 0.59 -0.6 909,750 - Atu3813 0.64 -0.1 909,956 - -1.3 910,013 + -0.2 910,019 - -1.2 910,029 - -0.9 910,054 + -0.5 910,055 - -0.5 910,055 - -0.1 910,062 - Atu3814 0.10 +0.3 910,062 - Atu3814 0.10 -0.0 910,070 + Atu3814 0.13 -0.5 910,112 - Atu3814 0.25 +0.1 910,245 - Atu3814 0.66 -0.1 910,245 - Atu3814 0.66 -0.9 910,245 - Atu3814 0.66 -0.5 910,245 - Atu3814 0.66 -0.2 910,256 + Atu3814 0.69 -0.1 910,264 - Atu3814 0.72 -0.3 910,286 + Atu3814 0.78 -1.2 910,360 - -0.5 910,451 + +0.5 910,492 - Atu3815 0.16 +1.0 910,493 - Atu3815 0.16 +0.8 910,493 - Atu3815 0.16 +0.7 910,500 + Atu3815 0.17 +2.1 910,528 - Atu3815 0.21 +1.6 910,564 - Atu3815 0.27 +1.2 910,606 + Atu3815 0.33 +0.6 910,607 - Atu3815 0.33 +0.4 910,634 + Atu3815 0.37 +1.1 910,749 - Atu3815 0.55 +0.7 910,832 + Atu3815 0.67 +0.7 910,849 + Atu3815 0.70 +0.7 910,867 - Atu3815 0.73 +0.6 911,001 + +0.5
Or see this region's nucleotide sequence