Strain Fitness in Agrobacterium fabrum C58 around Atu3672

Experiment: L-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3671 and Atu3672 are separated by 39 nucleotidesAtu3672 and Atu3673 are separated by 41 nucleotides Atu3671: Atu3671 - siderophore biosynthesis protein, at 721,484 to 722,551 Atu3671 Atu3672: Atu3672 - polyketide synthase, at 722,591 to 727,153 Atu3672 Atu3673: Atu3673 - siderophore biosynthesis protein, at 727,195 to 729,447 Atu3673 Position (kb) 722 723 724 725 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 721.616 kb on - strand, within Atu3671at 721.631 kb on - strand, within Atu3671at 721.646 kb on + strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.656 kb on + strand, within Atu3671at 721.664 kb on - strand, within Atu3671at 721.741 kb on + strand, within Atu3671at 721.741 kb on + strand, within Atu3671at 721.784 kb on + strand, within Atu3671at 721.825 kb on + strand, within Atu3671at 721.870 kb on - strand, within Atu3671at 722.007 kb on + strand, within Atu3671at 722.048 kb on - strand, within Atu3671at 722.067 kb on + strand, within Atu3671at 722.115 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.160 kb on - strand, within Atu3671at 722.160 kb on - strand, within Atu3671at 722.197 kb on - strand, within Atu3671at 722.266 kb on + strand, within Atu3671at 722.339 kb on + strand, within Atu3671at 722.347 kb on - strand, within Atu3671at 722.347 kb on - strand, within Atu3671at 722.358 kb on + strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.373 kb on + strand, within Atu3671at 722.381 kb on - strand, within Atu3671at 722.402 kb on - strand, within Atu3671at 722.477 kb on + strandat 722.645 kb on + strandat 722.673 kb on + strandat 722.711 kb on - strandat 722.930 kb on + strandat 722.938 kb on - strandat 722.994 kb on - strandat 723.153 kb on - strand, within Atu3672at 723.209 kb on + strand, within Atu3672at 723.351 kb on + strand, within Atu3672at 723.351 kb on + strand, within Atu3672at 723.502 kb on - strand, within Atu3672at 723.504 kb on - strand, within Atu3672at 723.548 kb on - strand, within Atu3672at 723.562 kb on + strand, within Atu3672at 723.633 kb on + strand, within Atu3672at 723.650 kb on + strand, within Atu3672at 723.671 kb on + strand, within Atu3672at 723.710 kb on + strand, within Atu3672at 723.759 kb on - strand, within Atu3672at 723.866 kb on + strand, within Atu3672at 723.866 kb on + strand, within Atu3672at 723.874 kb on - strand, within Atu3672at 723.882 kb on - strand, within Atu3672at 723.953 kb on - strand, within Atu3672at 724.170 kb on + strand, within Atu3672at 724.240 kb on + strand, within Atu3672at 724.278 kb on - strand, within Atu3672at 724.278 kb on - strand, within Atu3672at 724.372 kb on + strand, within Atu3672at 724.503 kb on - strand, within Atu3672at 724.521 kb on + strand, within Atu3672at 724.642 kb on + strand, within Atu3672at 724.677 kb on - strand, within Atu3672at 724.677 kb on - strand, within Atu3672at 724.684 kb on + strand, within Atu3672at 724.696 kb on + strand, within Atu3672at 724.696 kb on + strand, within Atu3672at 724.833 kb on + strand, within Atu3672at 724.833 kb on - strand, within Atu3672at 724.841 kb on - strand, within Atu3672at 724.988 kb on - strand, within Atu3672at 725.041 kb on + strand, within Atu3672at 725.041 kb on + strand, within Atu3672at 725.049 kb on - strand, within Atu3672at 725.100 kb on - strand, within Atu3672at 725.131 kb on + strand, within Atu3672at 725.211 kb on - strand, within Atu3672at 725.277 kb on + strand, within Atu3672at 725.282 kb on + strand, within Atu3672at 725.290 kb on - strand, within Atu3672at 725.300 kb on - strand, within Atu3672at 725.376 kb on + strand, within Atu3672at 725.376 kb on + strand, within Atu3672at 725.384 kb on - strand, within Atu3672at 725.396 kb on + strand, within Atu3672at 725.466 kb on - strand, within Atu3672at 725.466 kb on - strand, within Atu3672at 725.471 kb on - strand, within Atu3672at 725.539 kb on - strand, within Atu3672at 725.652 kb on + strand, within Atu3672at 725.739 kb on + strand, within Atu3672at 725.898 kb on + strand, within Atu3672at 725.933 kb on + strand, within Atu3672at 725.958 kb on + strand, within Atu3672at 725.966 kb on - strand, within Atu3672at 725.979 kb on - strand, within Atu3672at 726.011 kb on - strand, within Atu3672at 726.071 kb on + strand, within Atu3672at 726.071 kb on + strand, within Atu3672at 726.080 kb on + strand, within Atu3672at 726.123 kb on + strand, within Atu3672at 726.129 kb on + strand, within Atu3672at 726.137 kb on - strand, within Atu3672at 726.179 kb on - strand, within Atu3672at 726.196 kb on - strand, within Atu3672at 726.455 kb on + strand, within Atu3672at 726.477 kb on + strand, within Atu3672at 726.505 kb on + strand, within Atu3672at 726.538 kb on - strand, within Atu3672at 726.547 kb on + strand, within Atu3672at 726.628 kb on + strand, within Atu3672at 726.646 kb on + strand, within Atu3672at 726.654 kb on - strand, within Atu3672at 726.669 kb on - strand, within Atu3672at 726.753 kb on - strandat 726.753 kb on - strandat 726.809 kb on + strandat 726.869 kb on + strandat 726.872 kb on - strandat 726.877 kb on - strandat 727.050 kb on - strandat 727.100 kb on - strandat 727.179 kb on + strandat 727.208 kb on + strandat 727.216 kb on - strandat 727.228 kb on + strandat 727.242 kb on + strandat 727.304 kb on + strandat 727.539 kb on + strand, within Atu3673at 727.781 kb on + strand, within Atu3673at 727.890 kb on + strand, within Atu3673at 727.976 kb on - strand, within Atu3673at 727.976 kb on - strand, within Atu3673at 727.990 kb on + strand, within Atu3673at 727.998 kb on - strand, within Atu3673at 728.133 kb on + strand, within Atu3673at 728.149 kb on - strand, within Atu3673

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Xylose (C)
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721,616 - Atu3671 0.12 -0.4
721,631 - Atu3671 0.14 -0.4
721,646 + Atu3671 0.15 -0.8
721,654 - Atu3671 0.16 -0.3
721,654 - Atu3671 0.16 -0.1
721,654 - Atu3671 0.16 -0.8
721,654 - Atu3671 0.16 -0.2
721,656 + Atu3671 0.16 -0.5
721,664 - Atu3671 0.17 -0.0
721,741 + Atu3671 0.24 -0.3
721,741 + Atu3671 0.24 -0.6
721,784 + Atu3671 0.28 -1.1
721,825 + Atu3671 0.32 -0.2
721,870 - Atu3671 0.36 +0.2
722,007 + Atu3671 0.49 -0.9
722,048 - Atu3671 0.53 -0.8
722,067 + Atu3671 0.55 -1.3
722,115 + Atu3671 0.59 +0.2
722,152 + Atu3671 0.63 -0.5
722,152 + Atu3671 0.63 -2.5
722,152 + Atu3671 0.63 -0.4
722,152 + Atu3671 0.63 -1.3
722,152 + Atu3671 0.63 -0.1
722,152 + Atu3671 0.63 -0.6
722,160 - Atu3671 0.63 -0.4
722,160 - Atu3671 0.63 +0.0
722,197 - Atu3671 0.67 +0.3
722,266 + Atu3671 0.73 +0.4
722,339 + Atu3671 0.80 -0.8
722,347 - Atu3671 0.81 +0.4
722,347 - Atu3671 0.81 +0.4
722,358 + Atu3671 0.82 -0.7
722,366 - Atu3671 0.83 -0.3
722,366 - Atu3671 0.83 -0.3
722,366 - Atu3671 0.83 -0.3
722,366 - Atu3671 0.83 +0.3
722,373 + Atu3671 0.83 -0.3
722,381 - Atu3671 0.84 -0.1
722,402 - Atu3671 0.86 -0.8
722,477 + -0.5
722,645 + +0.5
722,673 + -1.1
722,711 - -0.0
722,930 + +2.6
722,938 - +0.1
722,994 - -0.3
723,153 - Atu3672 0.12 +0.2
723,209 + Atu3672 0.14 -0.6
723,351 + Atu3672 0.17 -0.2
723,351 + Atu3672 0.17 -0.5
723,502 - Atu3672 0.20 -0.2
723,504 - Atu3672 0.20 -0.4
723,548 - Atu3672 0.21 -0.4
723,562 + Atu3672 0.21 -0.5
723,633 + Atu3672 0.23 -1.2
723,650 + Atu3672 0.23 -0.8
723,671 + Atu3672 0.24 -0.0
723,710 + Atu3672 0.25 +1.2
723,759 - Atu3672 0.26 -0.4
723,866 + Atu3672 0.28 -0.6
723,866 + Atu3672 0.28 -0.5
723,874 - Atu3672 0.28 -2.2
723,882 - Atu3672 0.28 -0.3
723,953 - Atu3672 0.30 -0.2
724,170 + Atu3672 0.35 -0.7
724,240 + Atu3672 0.36 +0.1
724,278 - Atu3672 0.37 -0.5
724,278 - Atu3672 0.37 +0.9
724,372 + Atu3672 0.39 +0.3
724,503 - Atu3672 0.42 -1.2
724,521 + Atu3672 0.42 -0.1
724,642 + Atu3672 0.45 -0.9
724,677 - Atu3672 0.46 -0.6
724,677 - Atu3672 0.46 -0.5
724,684 + Atu3672 0.46 -0.3
724,696 + Atu3672 0.46 -1.3
724,696 + Atu3672 0.46 -2.0
724,833 + Atu3672 0.49 -0.3
724,833 - Atu3672 0.49 +0.2
724,841 - Atu3672 0.49 -0.3
724,988 - Atu3672 0.53 -0.4
725,041 + Atu3672 0.54 +0.5
725,041 + Atu3672 0.54 -0.7
725,049 - Atu3672 0.54 -0.8
725,100 - Atu3672 0.55 -0.6
725,131 + Atu3672 0.56 -0.4
725,211 - Atu3672 0.57 -0.1
725,277 + Atu3672 0.59 -0.3
725,282 + Atu3672 0.59 -1.2
725,290 - Atu3672 0.59 +0.3
725,300 - Atu3672 0.59 -2.0
725,376 + Atu3672 0.61 -0.7
725,376 + Atu3672 0.61 +0.2
725,384 - Atu3672 0.61 -0.2
725,396 + Atu3672 0.61 -0.6
725,466 - Atu3672 0.63 +0.2
725,466 - Atu3672 0.63 -0.8
725,471 - Atu3672 0.63 +0.1
725,539 - Atu3672 0.65 +0.1
725,652 + Atu3672 0.67 +1.2
725,739 + Atu3672 0.69 +0.6
725,898 + Atu3672 0.72 +0.8
725,933 + Atu3672 0.73 -0.2
725,958 + Atu3672 0.74 +0.2
725,966 - Atu3672 0.74 -0.5
725,979 - Atu3672 0.74 -0.9
726,011 - Atu3672 0.75 -0.6
726,071 + Atu3672 0.76 +0.8
726,071 + Atu3672 0.76 -0.4
726,080 + Atu3672 0.76 -0.8
726,123 + Atu3672 0.77 +0.4
726,129 + Atu3672 0.78 -0.3
726,137 - Atu3672 0.78 +0.2
726,179 - Atu3672 0.79 +0.0
726,196 - Atu3672 0.79 -1.5
726,455 + Atu3672 0.85 -0.4
726,477 + Atu3672 0.85 +0.6
726,505 + Atu3672 0.86 -0.6
726,538 - Atu3672 0.87 -0.8
726,547 + Atu3672 0.87 +0.6
726,628 + Atu3672 0.88 -0.1
726,646 + Atu3672 0.89 -0.1
726,654 - Atu3672 0.89 -0.3
726,669 - Atu3672 0.89 -0.5
726,753 - -0.4
726,753 - -0.5
726,809 + -0.1
726,869 + -0.3
726,872 - -0.4
726,877 - -0.2
727,050 - -0.5
727,100 - -0.5
727,179 + -0.5
727,208 + +0.1
727,216 - -0.5
727,228 + -0.2
727,242 + +0.5
727,304 + -0.1
727,539 + Atu3673 0.15 +0.6
727,781 + Atu3673 0.26 -0.5
727,890 + Atu3673 0.31 -0.8
727,976 - Atu3673 0.35 -0.2
727,976 - Atu3673 0.35 -2.0
727,990 + Atu3673 0.35 -0.7
727,998 - Atu3673 0.36 -0.4
728,133 + Atu3673 0.42 -0.0
728,149 - Atu3673 0.42 +0.2

Or see this region's nucleotide sequence