Experiment: L-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0755 and Atu0756 are separated by 163 nucleotides Atu0756 and Atu0757 are separated by 30 nucleotides Atu0757 and Atu0758 are separated by 131 nucleotides
Atu0755: Atu0755 - hypothetical protein, at 753,122 to 753,424
Atu0755
Atu0756: Atu0756 - phosphoglycerate mutase, at 753,588 to 754,178
Atu0756
Atu0757: Atu0757 - enoyl-(acyl-carrier-protein) reductase, at 754,209 to 755,027
Atu0757
Atu0758: Atu0758 - molecular chaperone, DnaJ family, at 755,159 to 756,274
Atu0758
Position (kb) 754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2 at 753.212 kb on + strand, within Atu0755 at 753.222 kb on + strand, within Atu0755 at 753.270 kb on + strand, within Atu0755 at 753.282 kb on + strand, within Atu0755 at 753.441 kb on - strand at 753.441 kb on - strand at 753.497 kb on + strand at 753.565 kb on + strand at 753.606 kb on + strand at 753.606 kb on + strand at 753.779 kb on + strand, within Atu0756 at 753.881 kb on + strand, within Atu0756 at 753.882 kb on + strand, within Atu0756 at 753.882 kb on + strand, within Atu0756 at 753.890 kb on - strand, within Atu0756 at 753.947 kb on + strand, within Atu0756 at 753.948 kb on + strand, within Atu0756 at 753.956 kb on - strand, within Atu0756 at 753.974 kb on + strand, within Atu0756 at 754.047 kb on - strand, within Atu0756 at 754.214 kb on - strand at 754.214 kb on - strand at 755.061 kb on - strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.116 kb on + strand at 755.116 kb on - strand at 755.165 kb on + strand at 755.192 kb on - strand at 755.317 kb on - strand, within Atu0758 at 755.322 kb on - strand, within Atu0758 at 755.378 kb on + strand, within Atu0758 at 755.503 kb on + strand, within Atu0758 at 755.511 kb on - strand, within Atu0758 at 755.511 kb on - strand, within Atu0758 at 755.590 kb on + strand, within Atu0758 at 755.609 kb on - strand, within Atu0758 at 755.706 kb on + strand, within Atu0758 at 755.750 kb on - strand, within Atu0758 at 755.762 kb on + strand, within Atu0758 at 755.845 kb on + strand, within Atu0758 at 755.845 kb on + strand, within Atu0758 at 755.945 kb on + strand, within Atu0758 at 755.996 kb on - strand, within Atu0758
Per-strain Table
Position Strand Gene LocusTag Fraction L-Xylose (C) remove 753,212 + Atu0755 0.30 +0.4 753,222 + Atu0755 0.33 +0.5 753,270 + Atu0755 0.49 +0.6 753,282 + Atu0755 0.53 +1.0 753,441 - +0.2 753,441 - -0.2 753,497 + -1.6 753,565 + -0.4 753,606 + +0.2 753,606 + -0.4 753,779 + Atu0756 0.32 -0.4 753,881 + Atu0756 0.50 -0.4 753,882 + Atu0756 0.50 +1.8 753,882 + Atu0756 0.50 +0.7 753,890 - Atu0756 0.51 +0.9 753,947 + Atu0756 0.61 +1.6 753,948 + Atu0756 0.61 +0.4 753,956 - Atu0756 0.62 -0.0 753,974 + Atu0756 0.65 -0.8 754,047 - Atu0756 0.78 +0.0 754,214 - +0.0 754,214 - -0.1 755,061 - +1.3 755,108 + +0.2 755,108 + +0.8 755,108 + +0.0 755,108 + -0.1 755,108 + +0.3 755,116 + +0.3 755,116 - -0.6 755,165 + +0.5 755,192 - -0.7 755,317 - Atu0758 0.14 -0.9 755,322 - Atu0758 0.15 -0.7 755,378 + Atu0758 0.20 +0.4 755,503 + Atu0758 0.31 -1.9 755,511 - Atu0758 0.32 -0.4 755,511 - Atu0758 0.32 -0.9 755,590 + Atu0758 0.39 -0.0 755,609 - Atu0758 0.40 -0.5 755,706 + Atu0758 0.49 -0.6 755,750 - Atu0758 0.53 -0.3 755,762 + Atu0758 0.54 -0.4 755,845 + Atu0758 0.61 +0.0 755,845 + Atu0758 0.61 -1.5 755,945 + Atu0758 0.70 +0.1 755,996 - Atu0758 0.75 +0.0
Or see this region's nucleotide sequence