Strain Fitness in Escherichia coli BW25113 around b2870

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
3,003,346	-	ygeV	b2869	0.74	+0.4
3,003,358	-	ygeV	b2869	0.75	-0.5
3,003,358	-	ygeV	b2869	0.75	-0.6
3,003,361	-	ygeV	b2869	0.75	-0.1
3,003,368	-	ygeV	b2869	0.75	+0.6
3,003,368	-	ygeV	b2869	0.75	-0.2
3,003,439	-	ygeV	b2869	0.79	+2.4
3,003,447	-	ygeV	b2869	0.80	+0.4
3,003,449	-	ygeV	b2869	0.80	-1.0
3,003,456	-	ygeV	b2869	0.80	-0.6
3,003,460	-	ygeV	b2869	0.80	-0.1
3,003,460	-	ygeV	b2869	0.80	+0.3
3,003,460	-	ygeV	b2869	0.80	-1.0
3,003,475	+	ygeV	b2869	0.81	+0.6
3,003,483	-	ygeV	b2869	0.82	-0.3
3,003,483	-	ygeV	b2869	0.82	+0.4
3,003,483	-	ygeV	b2869	0.82	-0.6
3,003,483	-	ygeV	b2869	0.82	-0.0
3,003,483	-	ygeV	b2869	0.82	+1.4
3,003,509	+	ygeV	b2869	0.83	+0.9
3,003,560	+	ygeV	b2869	0.86	+0.5
3,003,564	+	ygeV	b2869	0.86	+0.1
3,003,578	-	ygeV	b2869	0.87	+1.4
3,003,580	-	ygeV	b2869	0.87	-1.1
3,003,583	-	ygeV	b2869	0.87	-3.0
3,003,624	+	ygeV	b2869	0.90	+0.7
3,003,633	-				-0.2
3,003,651	-				+0.2
3,003,665	+				+0.4
3,003,714	+				-0.7
3,003,722	-				-1.0
3,003,788	-				-2.0
3,003,798	-				+2.4
3,003,798	-				-0.5
3,003,800	-				-0.2
3,003,801	-				+1.1
3,003,805	+				+0.4
3,003,805	+				-1.2
3,003,805	+				+0.7
3,003,805	-				+0.2
3,003,809	+				+0.4
3,003,810	-				-2.2
3,003,817	+				+1.8
3,003,818	-				-2.0
3,003,818	-				+0.1
3,003,823	-				-0.2
3,003,825	-				+2.7
3,003,829	+				-0.6
3,003,829	+				-1.2
3,003,829	+				-0.1
3,003,840	+				-1.1
3,003,844	+				+0.1
3,003,850	-				-0.1
3,003,858	+				+0.4
3,003,858	+				+1.4
3,003,866	+				+0.9
3,003,949	+				-1.2
3,003,960	-				+0.8
3,003,960	-				-1.1
3,004,015	-				-1.2
3,004,106	-				-0.2
3,004,185	+				+1.4
3,004,193	-				-1.8
3,004,193	-				-0.0
3,004,200	+				-1.2
3,004,200	+				-0.1
3,004,203	-				+0.4
3,004,208	-				+0.4
3,004,208	-				-0.1
3,004,208	-				-2.0
3,004,243	-				+0.4
3,004,270	-				+0.8
3,004,315	-				+1.4
3,004,315	-				+0.4
3,004,323	-				+0.2
3,004,376	-				+1.2
3,004,383	-				-0.3
3,004,386	-				-0.1
3,004,386	-				-0.2
3,004,390	+				+1.6
3,004,392	+				-1.6
3,004,403	-	ygeW	b2870	0.10	-0.3
3,004,406	-	ygeW	b2870	0.10	+1.2
3,004,421	-	ygeW	b2870	0.12	+0.4
3,004,421	-	ygeW	b2870	0.12	+0.4
3,004,425	+	ygeW	b2870	0.12	+2.7
3,004,425	+	ygeW	b2870	0.12	+2.7
3,004,447	-	ygeW	b2870	0.14	+0.9
3,004,498	+	ygeW	b2870	0.18	+0.1
3,004,500	-	ygeW	b2870	0.18	-0.2
3,004,505	-	ygeW	b2870	0.19	+0.1
3,004,505	-	ygeW	b2870	0.19	+1.2
3,004,505	-	ygeW	b2870	0.19	+1.6
3,004,540	+	ygeW	b2870	0.21	+1.1
3,004,548	-	ygeW	b2870	0.22	+0.4
3,004,548	-	ygeW	b2870	0.22	-1.6
3,004,654	+	ygeW	b2870	0.31	-2.0
3,004,654	+	ygeW	b2870	0.31	-1.2
3,004,662	-	ygeW	b2870	0.32	+0.1
3,004,679	-	ygeW	b2870	0.33	+0.4
3,004,679	-	ygeW	b2870	0.33	-2.0
3,004,710	-	ygeW	b2870	0.36	+0.9
3,004,710	-	ygeW	b2870	0.36	+2.1
3,004,728	-	ygeW	b2870	0.37	+0.1
3,004,768	+	ygeW	b2870	0.41	+1.1
3,004,862	+	ygeW	b2870	0.49	+2.8
3,004,950	+	ygeW	b2870	0.56	-0.1
3,005,080	+	ygeW	b2870	0.67	+1.4
3,005,095	+	ygeW	b2870	0.68	+0.4
3,005,209	-	ygeW	b2870	0.78	+0.4
3,005,256	+	ygeW	b2870	0.82	+1.4
3,005,261	+	ygeW	b2870	0.82	+2.4
3,005,365	-				+0.1
3,005,420	+				+1.1
3,005,420	+				+0.7
3,005,430	-				+0.6
3,005,637	-				+0.4
3,005,637	-				+0.4
3,005,891	+	ygeX	b2871	0.30	-0.0
3,005,891	+	ygeX	b2871	0.30	-0.9
3,005,897	-	ygeX	b2871	0.30	-0.5
3,005,908	+	ygeX	b2871	0.31	-0.1
3,005,908	+	ygeX	b2871	0.31	+1.4
3,005,948	+	ygeX	b2871	0.35	-0.6
3,005,948	+	ygeX	b2871	0.35	+1.4
3,005,976	-	ygeX	b2871	0.37	+0.7
3,006,051	-	ygeX	b2871	0.43	+1.9
3,006,098	-	ygeX	b2871	0.47	-1.1
3,006,098	-	ygeX	b2871	0.47	-1.6
3,006,100	+	ygeX	b2871	0.47	+0.4
3,006,191	+	ygeX	b2871	0.55	+0.4
3,006,249	+	ygeX	b2871	0.60	+0.4
3,006,277	-	ygeX	b2871	0.62	+0.6
3,006,295	+	ygeX	b2871	0.64	+0.0
3,006,377	+	ygeX	b2871	0.71	-1.0
3,006,377	+	ygeX	b2871	0.71	-1.2
3,006,391	-	ygeX	b2871	0.72	+0.4
3,006,393	+	ygeX	b2871	0.72	-2.1
3,006,401	-	ygeX	b2871	0.73	+0.1