Strain Fitness in Escherichia coli BW25113 around b4026

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,232,944	+	pgi	b4025	0.70	-2.5
4,233,014	-	pgi	b4025	0.75	-0.5
4,233,014	-	pgi	b4025	0.75	-0.0
4,233,027	-	pgi	b4025	0.76	+0.5
4,233,121	+	pgi	b4025	0.81	-0.0
4,233,121	+	pgi	b4025	0.81	-0.5
4,233,155	-	pgi	b4025	0.83	+1.1
4,233,184	+	pgi	b4025	0.85	+0.8
4,233,200	-	pgi	b4025	0.86	-1.6
4,233,200	-	pgi	b4025	0.86	+0.5
4,233,217	+	pgi	b4025	0.87	+1.5
4,233,217	+	pgi	b4025	0.87	-0.5
4,233,268	+				+0.9
4,233,271	-				+1.1
4,233,277	+				+0.8
4,233,314	-				+1.5
4,233,314	-				+1.5
4,233,403	-				-1.0
4,233,406	+				+1.1
4,233,408	-				-0.0
4,233,417	-				+0.1
4,233,426	+				+1.5
4,233,426	+				-1.0
4,233,426	+				+0.1
4,233,460	-				+0.3
4,233,461	+				+0.2
4,233,461	+				-1.5
4,233,479	+				-0.5
4,233,480	-				-0.0
4,233,487	-				+0.9
4,233,490	+				+0.5
4,233,490	+				+0.5
4,233,504	+				+0.8
4,233,512	+				-1.8
4,233,512	-				+1.3
4,233,512	-				-0.0
4,233,512	-				+1.2
4,233,514	+				+1.1
4,233,514	+				-0.5
4,233,514	+				+0.1
4,233,516	+				+0.1
4,233,522	-				-0.2
4,233,522	-				+0.5
4,233,522	-				-0.8
4,233,522	-				-0.7
4,233,525	-				-1.3
4,233,527	+				-0.8
4,233,532	+				+0.3
4,233,535	+				-0.7
4,233,535	-				+1.8
4,233,537	-				+1.3
4,233,543	-				-1.0
4,233,544	-				-0.5
4,233,545	-				+0.5
4,233,558	+				+0.1
4,233,558	+				-0.0
4,233,560	+				-0.5
4,233,568	-				-0.3
4,233,568	-				+0.1
4,233,583	+				-0.2
4,233,583	+				+0.2
4,233,583	+				-0.5
4,233,584	+				+1.3
4,233,604	-				-0.2
4,233,625	+				-0.4
4,233,625	+				+1.7
4,233,627	+				-1.5
4,233,627	+				-1.0
4,233,648	-				-0.3
4,233,853	+				-0.8
4,233,853	+				-0.5
4,233,853	+				+0.5
4,233,859	-				-0.0
4,233,861	+				+0.3
4,233,861	+				+0.2
4,233,861	+				-0.2
4,233,861	+				-1.0
4,233,861	-				-1.0
4,233,861	-				-0.3
4,233,861	-				-0.6
4,233,863	+				+0.5
4,233,863	+				+0.5
4,233,869	-				-0.2
4,233,869	-				+1.8
4,233,869	-				-0.2
4,233,869	-				-0.0
4,233,869	-				-0.2
4,233,869	-				-0.5
4,233,869	-				+0.2
4,233,869	-				+0.1
4,233,869	-				-1.8
4,233,869	-				+0.5
4,233,871	-				-1.5
4,233,871	-				-0.6
4,233,927	-				+0.3
4,233,961	+	yjbE	b4026	0.13	+1.3
4,233,961	+	yjbE	b4026	0.13	-0.2
4,233,962	-	yjbE	b4026	0.14	+0.1
4,233,963	+	yjbE	b4026	0.14	+0.2
4,233,977	+	yjbE	b4026	0.20	-0.5
4,233,987	+	yjbE	b4026	0.24	+1.0
4,233,993	+	yjbE	b4026	0.26	-1.6
4,233,995	+	yjbE	b4026	0.27	-1.0
4,233,996	+	yjbE	b4026	0.28	+1.9
4,233,996	+	yjbE	b4026	0.28	+0.5
4,233,996	+	yjbE	b4026	0.28	+0.0
4,233,996	+	yjbE	b4026	0.28	+1.3
4,233,996	+	yjbE	b4026	0.28	+0.5
4,233,998	+	yjbE	b4026	0.28	-0.5
4,234,003	-	yjbE	b4026	0.30	+0.7
4,234,003	-	yjbE	b4026	0.30	+1.5
4,234,003	-	yjbE	b4026	0.30	+0.5
4,234,003	-	yjbE	b4026	0.30	+1.5
4,234,003	-	yjbE	b4026	0.30	-0.2
4,234,003	-	yjbE	b4026	0.30	+1.2
4,234,004	-	yjbE	b4026	0.31	+2.0
4,234,004	-	yjbE	b4026	0.31	-0.3
4,234,004	-	yjbE	b4026	0.31	+0.8
4,234,004	-	yjbE	b4026	0.31	-0.2
4,234,004	-	yjbE	b4026	0.31	-1.6
4,234,006	-	yjbE	b4026	0.32	+2.5
4,234,006	-	yjbE	b4026	0.32	+2.1
4,234,029	-	yjbE	b4026	0.41	+0.8
4,234,126	+	yjbE	b4026	0.81	+0.3
4,234,161	+				-1.0
4,234,184	-				+1.5
4,234,212	+				+0.7
4,234,214	+				-0.6
4,234,235	+				-0.6
4,234,264	-				-1.0
4,234,280	-				+2.1
4,234,280	-				-1.0
4,234,300	-				+0.4
4,234,300	-				+1.2
4,234,329	-				-0.8
4,234,331	+				+0.2
4,234,331	+				+2.1
4,234,340	+				+0.5
4,234,340	+				+0.5
4,234,348	-				+0.5
4,234,399	-	yjbF	b4027	0.18	-0.3
4,234,457	-	yjbF	b4027	0.27	+0.8
4,234,469	+	yjbF	b4027	0.29	-2.0
4,234,522	+	yjbF	b4027	0.37	-0.5
4,234,522	+	yjbF	b4027	0.37	-0.0
4,234,525	-	yjbF	b4027	0.38	-1.5
4,234,525	-	yjbF	b4027	0.38	+3.3
4,234,525	-	yjbF	b4027	0.38	-1.0
4,234,525	-	yjbF	b4027	0.38	+1.0
4,234,527	+	yjbF	b4027	0.38	+0.5
4,234,572	-	yjbF	b4027	0.45	+0.3
4,234,668	+	yjbF	b4027	0.60	-1.5
4,234,668	+	yjbF	b4027	0.60	+0.5
4,234,676	-	yjbF	b4027	0.61	-0.5
4,234,676	-	yjbF	b4027	0.61	-0.2
4,234,698	-	yjbF	b4027	0.65	-0.5
4,234,698	-	yjbF	b4027	0.65	+0.5
4,234,722	-	yjbF	b4027	0.68	-1.2
4,234,821	+	yjbF	b4027	0.84	-0.3
4,234,829	-	yjbF	b4027	0.85	-0.1
4,235,042	+	yjbG	b4028	0.17	-1.0
4,235,053	+	yjbG	b4028	0.18	+1.3
4,235,053	+	yjbG	b4028	0.18	+0.5
4,235,072	-	yjbG	b4028	0.21	+2.0
4,235,147	+	yjbG	b4028	0.31	-0.5
4,235,164	+	yjbG	b4028	0.33	+1.9
4,235,164	+	yjbG	b4028	0.33	-0.0