Strain Fitness in Escherichia coli BW25113 around b3579

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
3,743,197	-	yiaN	b3578	0.29	-0.5
3,743,197	-	yiaN	b3578	0.29	-0.1
3,743,224	-	yiaN	b3578	0.31	+0.1
3,743,224	-	yiaN	b3578	0.31	+0.5
3,743,342	+	yiaN	b3578	0.40	-1.5
3,743,342	+	yiaN	b3578	0.40	-0.9
3,743,365	-	yiaN	b3578	0.42	-0.1
3,743,365	-	yiaN	b3578	0.42	-0.2
3,743,371	+	yiaN	b3578	0.43	-0.5
3,743,382	+	yiaN	b3578	0.43	-2.1
3,743,382	+	yiaN	b3578	0.43	+0.9
3,743,383	+	yiaN	b3578	0.44	-0.6
3,743,383	+	yiaN	b3578	0.44	-0.4
3,743,536	-	yiaN	b3578	0.55	+0.2
3,743,573	+	yiaN	b3578	0.58	+0.5
3,743,573	+	yiaN	b3578	0.58	-1.1
3,743,586	+	yiaN	b3578	0.59	+0.5
3,743,608	+	yiaN	b3578	0.61	+0.9
3,743,608	+	yiaN	b3578	0.61	+0.5
3,743,620	+	yiaN	b3578	0.62	+0.4
3,743,620	+	yiaN	b3578	0.62	-0.0
3,743,620	+	yiaN	b3578	0.62	+1.1
3,743,622	+	yiaN	b3578	0.62	-0.2
3,743,624	-	yiaN	b3578	0.62	+0.5
3,743,625	+	yiaN	b3578	0.62	+0.2
3,743,625	+	yiaN	b3578	0.62	-0.9
3,743,635	-	yiaN	b3578	0.63	-0.1
3,743,658	-	yiaN	b3578	0.65	-2.1
3,743,658	-	yiaN	b3578	0.65	+0.8
3,743,669	+	yiaN	b3578	0.66	+0.5
3,743,670	-	yiaN	b3578	0.66	-0.5
3,743,684	+	yiaN	b3578	0.67	-2.6
3,743,684	+	yiaN	b3578	0.67	-0.7
3,743,689	+	yiaN	b3578	0.67	+1.5
3,743,689	+	yiaN	b3578	0.67	-0.2
3,743,696	+	yiaN	b3578	0.68	+1.5
3,743,696	+	yiaN	b3578	0.68	+0.5
3,743,699	+	yiaN	b3578	0.68	+0.8
3,743,704	+	yiaN	b3578	0.69	+1.5
3,743,707	+	yiaN	b3578	0.69	-0.5
3,743,707	+	yiaN	b3578	0.69	+1.1
3,743,710	+	yiaN	b3578	0.69	-0.4
3,743,715	-	yiaN	b3578	0.69	+1.7
3,743,715	-	yiaN	b3578	0.69	-0.5
3,743,715	-	yiaN	b3578	0.69	+0.7
3,743,715	-	yiaN	b3578	0.69	+0.8
3,743,715	-	yiaN	b3578	0.69	+0.7
3,743,715	-	yiaN	b3578	0.69	-1.2
3,743,715	-	yiaN	b3578	0.69	+1.5
3,743,715	-	yiaN	b3578	0.69	+1.1
3,743,717	+	yiaN	b3578	0.70	+2.1
3,743,727	+	yiaN	b3578	0.70	+0.5
3,743,728	+	yiaN	b3578	0.71	+0.1
3,743,733	+	yiaN	b3578	0.71	-1.4
3,743,735	-	yiaN	b3578	0.71	+1.3
3,743,741	-	yiaN	b3578	0.72	+0.5
3,743,744	+	yiaN	b3578	0.72	-0.2
3,743,745	+	yiaN	b3578	0.72	-1.8
3,743,755	+	yiaN	b3578	0.73	-1.1
3,743,755	+	yiaN	b3578	0.73	-0.7
3,743,755	+	yiaN	b3578	0.73	+1.5
3,743,755	+	yiaN	b3578	0.73	+0.7
3,743,755	+	yiaN	b3578	0.73	-0.3
3,743,758	+	yiaN	b3578	0.73	+1.3
3,743,771	-	yiaN	b3578	0.74	+0.7
3,743,775	+	yiaN	b3578	0.74	+1.1
3,743,787	+	yiaN	b3578	0.75	-0.4
3,743,787	-	yiaN	b3578	0.75	+1.5
3,743,787	-	yiaN	b3578	0.75	-0.2
3,743,794	+	yiaN	b3578	0.76	+0.3
3,743,802	+	yiaN	b3578	0.76	+0.3
3,743,806	+	yiaN	b3578	0.77	-0.2
3,743,810	+	yiaN	b3578	0.77	+0.9
3,743,811	+	yiaN	b3578	0.77	+0.2
3,743,811	+	yiaN	b3578	0.77	+0.5
3,743,811	+	yiaN	b3578	0.77	+1.3
3,743,811	+	yiaN	b3578	0.77	-1.4
3,743,811	+	yiaN	b3578	0.77	+0.3
3,743,811	+	yiaN	b3578	0.77	+0.5
3,743,811	+	yiaN	b3578	0.77	-0.5
3,743,811	+	yiaN	b3578	0.77	+1.1
3,743,811	+	yiaN	b3578	0.77	+0.7
3,743,818	+	yiaN	b3578	0.78	-0.5
3,743,818	+	yiaN	b3578	0.78	+0.5
3,743,832	+	yiaN	b3578	0.79	+0.3
3,743,863	+	yiaN	b3578	0.81	-0.3
3,743,865	+	yiaN	b3578	0.81	-0.4
3,743,871	+	yiaN	b3578	0.82	-0.1
3,743,881	-	yiaN	b3578	0.82	+0.5
3,743,881	-	yiaN	b3578	0.82	+0.5
3,743,883	+	yiaN	b3578	0.83	+0.7
3,743,889	+	yiaN	b3578	0.83	+0.1
3,743,889	+	yiaN	b3578	0.83	+0.5
3,743,932	+	yiaN	b3578	0.86	+0.5
3,743,932	+	yiaN	b3578	0.86	-0.3
3,743,932	+	yiaN	b3578	0.86	-0.6
3,743,932	+	yiaN	b3578	0.86	+0.3
3,743,940	+	yiaN	b3578	0.87	+1.3
3,744,003	+				+0.2
3,744,010	-				-1.5
3,744,137	-				-0.7
3,744,140	-				-0.1
3,744,154	-				+0.5
3,744,165	-				-1.8
3,744,170	-				-0.2
3,744,170	-				+1.0
3,744,170	-				-0.6
3,744,170	-				+0.3
3,744,175	-				-0.8
3,744,180	-				-0.5
3,744,180	-				-0.3
3,744,187	-				-0.2
3,744,220	-	yiaO	b3579	0.10	+0.3
3,744,224	-	yiaO	b3579	0.11	+0.5
3,744,241	-	yiaO	b3579	0.13	-1.8
3,744,244	-	yiaO	b3579	0.13	-1.1
3,744,244	-	yiaO	b3579	0.13	-0.9
3,744,314	-	yiaO	b3579	0.20	-2.1
3,744,319	-	yiaO	b3579	0.20	+0.9
3,744,319	-	yiaO	b3579	0.20	-1.1
3,744,330	-	yiaO	b3579	0.22	+0.2
3,744,330	-	yiaO	b3579	0.22	+0.1
3,744,333	-	yiaO	b3579	0.22	-0.2
3,744,337	-	yiaO	b3579	0.22	-0.5
3,744,343	-	yiaO	b3579	0.23	-0.5
3,744,343	-	yiaO	b3579	0.23	-0.3
3,744,343	-	yiaO	b3579	0.23	-1.4
3,744,343	-	yiaO	b3579	0.23	+0.1
3,744,349	-	yiaO	b3579	0.24	-0.1
3,744,356	-	yiaO	b3579	0.24	-1.6
3,744,417	-	yiaO	b3579	0.30	-0.3
3,744,454	-	yiaO	b3579	0.34	+0.9
3,744,488	-	yiaO	b3579	0.38	+0.4
3,744,510	+	yiaO	b3579	0.40	+1.5
3,744,510	+	yiaO	b3579	0.40	+0.3
3,744,568	-	yiaO	b3579	0.46	+0.3
3,744,692	-	yiaO	b3579	0.58	-1.1
3,744,698	+	yiaO	b3579	0.59	-0.5
3,744,698	+	yiaO	b3579	0.59	+0.5
3,744,699	+	yiaO	b3579	0.59	-2.3
3,744,732	+	yiaO	b3579	0.62	-1.4
3,744,751	-	yiaO	b3579	0.64	+0.5
3,744,858	-	yiaO	b3579	0.75	-1.1
3,744,865	-	yiaO	b3579	0.76	-0.5
3,745,064	+				+0.3
3,745,064	+				-0.1
3,745,091	-				+1.5
3,745,091	-				-0.5
3,745,095	-				+1.1
3,745,163	+				-0.9
3,745,196	+				+0.1
3,745,196	+				-1.8
3,745,257	-	lyxK	b3580	0.10	-0.5
3,745,257	-	lyxK	b3580	0.10	-0.1
3,745,276	-	lyxK	b3580	0.11	+0.2
3,745,295	+	lyxK	b3580	0.13	+0.5
3,745,295	+	lyxK	b3580	0.13	-0.1
3,745,492	-	lyxK	b3580	0.26	-1.1
3,745,538	-	lyxK	b3580	0.29	+0.2
3,745,578	-	lyxK	b3580	0.31	+0.0
3,745,629	-	lyxK	b3580	0.35	+0.1
3,745,652	+	lyxK	b3580	0.36	+0.4
3,745,666	+	lyxK	b3580	0.37	+0.2
3,745,712	-	lyxK	b3580	0.40	+0.7
3,745,727	+	lyxK	b3580	0.41	+1.1
3,745,728	+	lyxK	b3580	0.41	+0.6
3,745,767	-	lyxK	b3580	0.44	-0.5
3,745,785	+	lyxK	b3580	0.45	-0.1
3,745,881	-	lyxK	b3580	0.52	+1.1
3,745,881	-	lyxK	b3580	0.52	+0.5
3,745,900	-	lyxK	b3580	0.53	+0.5
3,745,973	+	lyxK	b3580	0.58	+1.1
3,745,973	+	lyxK	b3580	0.58	-0.5
3,746,056	-	lyxK	b3580	0.63	+0.5
3,746,056	-	lyxK	b3580	0.63	-0.1
3,746,070	+	lyxK	b3580	0.64	+0.5
3,746,086	+	lyxK	b3580	0.65	+0.2