Strain Fitness in Escherichia coli BW25113 around b3062

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
3,204,394	-				+0.4
3,204,394	-				-0.3
3,204,490	-				+0.4
3,204,490	-				+0.8
3,204,506	-				-0.6
3,204,506	-				-0.6
3,204,525	-				+1.4
3,204,525	-				+0.8
3,204,530	+				-0.6
3,204,572	+				-0.1
3,204,572	+				-0.6
3,204,572	+				-0.9
3,204,573	+				-1.3
3,204,573	+				-0.3
3,204,579	-	ttdA	b3061	0.10	+0.4
3,204,579	-	ttdA	b3061	0.10	+0.7
3,204,580	-	ttdA	b3061	0.10	-0.1
3,204,580	-	ttdA	b3061	0.10	-0.3
3,204,581	-	ttdA	b3061	0.11	-0.9
3,204,581	-	ttdA	b3061	0.11	+0.0
3,204,584	+	ttdA	b3061	0.11	+2.6
3,204,586	+	ttdA	b3061	0.11	-1.3
3,204,591	+	ttdA	b3061	0.12	-0.2
3,204,615	-	ttdA	b3061	0.14	-1.2
3,204,615	-	ttdA	b3061	0.14	-0.6
3,204,619	+	ttdA	b3061	0.15	+0.4
3,204,642	+	ttdA	b3061	0.17	+0.7
3,204,650	-	ttdA	b3061	0.18	-2.9
3,204,668	-	ttdA	b3061	0.20	-0.8
3,204,668	-	ttdA	b3061	0.20	-2.6
3,204,668	-	ttdA	b3061	0.20	+0.6
3,204,685	-	ttdA	b3061	0.22	+0.4
3,204,685	-	ttdA	b3061	0.22	-0.6
3,204,685	-	ttdA	b3061	0.22	-0.1
3,204,685	-	ttdA	b3061	0.22	-1.8
3,204,710	-	ttdA	b3061	0.25	+0.7
3,204,721	-	ttdA	b3061	0.26	-0.7
3,204,852	-	ttdA	b3061	0.40	-0.6
3,204,852	-	ttdA	b3061	0.40	+0.8
3,204,852	-	ttdA	b3061	0.40	-0.4
3,204,852	-	ttdA	b3061	0.40	+0.8
3,204,888	+	ttdA	b3061	0.44	+0.1
3,204,895	-	ttdA	b3061	0.45	+0.3
3,204,895	-	ttdA	b3061	0.45	+0.4
3,204,896	-	ttdA	b3061	0.45	-0.9
3,204,953	+	ttdA	b3061	0.51	+1.0
3,204,982	-	ttdA	b3061	0.54	-0.3
3,205,061	+	ttdA	b3061	0.63	-0.2
3,205,185	+	ttdA	b3061	0.77	+1.0
3,205,185	+	ttdA	b3061	0.77	+0.2
3,205,222	-	ttdA	b3061	0.81	+0.5
3,205,252	-	ttdA	b3061	0.84	+1.4
3,205,252	-	ttdA	b3061	0.84	+2.0
3,205,293	+	ttdA	b3061	0.89	+0.4
3,205,296	+	ttdA	b3061	0.89	+1.4
3,205,296	+	ttdA	b3061	0.89	-1.0
3,205,345	-				-0.5
3,205,345	-				-1.4
3,205,372	+				+0.4
3,205,380	-				-0.0
3,205,401	-				+0.2
3,205,495	-	ttdB	b3062	0.17	-0.3
3,205,627	-	ttdB	b3062	0.39	+1.0
3,205,783	-	ttdB	b3062	0.64	+1.4
3,205,823	-	ttdB	b3062	0.71	+0.4
3,205,823	-	ttdB	b3062	0.71	+1.1
3,205,846	+	ttdB	b3062	0.75	+0.4
3,205,846	+	ttdB	b3062	0.75	+1.4
3,206,003	+				-0.6
3,206,011	-				-0.0
3,206,011	-				-0.2
3,206,046	+				-0.9
3,206,046	+				+0.1
3,206,068	+				+0.0
3,206,084	+				+0.5
3,206,155	-				+0.4
3,206,155	-				+0.4
3,206,233	-	ygjE	b3063	0.13	+1.4
3,206,241	+	ygjE	b3063	0.13	-0.7
3,206,251	+	ygjE	b3063	0.14	+0.1
3,206,259	-	ygjE	b3063	0.15	-0.2
3,206,264	+	ygjE	b3063	0.15	+0.2
3,206,482	+	ygjE	b3063	0.30	-0.6
3,206,482	+	ygjE	b3063	0.30	+2.0
3,206,482	+				+0.4
3,206,503	+	ygjE	b3063	0.31	+0.5
3,206,513	+	ygjE	b3063	0.32	-1.7
3,206,578	-	ygjE	b3063	0.36	+0.6
3,206,608	+	ygjE	b3063	0.38	+0.8
3,206,608	+	ygjE	b3063	0.38	+0.4
3,206,613	+	ygjE	b3063	0.39	-0.7
3,206,625	-	ygjE	b3063	0.40	-0.5
3,206,640	+	ygjE	b3063	0.41	+0.1
3,206,648	+	ygjE	b3063	0.41	+2.7
3,206,716	-	ygjE	b3063	0.46	-0.6
3,206,735	+	ygjE	b3063	0.47	-0.3
3,206,735	+	ygjE	b3063	0.47	+0.4
3,206,738	-	ygjE	b3063	0.47	+0.6
3,206,983	+	ygjE	b3063	0.64	+0.4
3,206,983	+	ygjE	b3063	0.64	+1.1