Strain Fitness in Escherichia coli BW25113 around b3039

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
3,178,653	-	ygiC	b3038	0.18	-1.6
3,178,754	-	ygiC	b3038	0.27	+0.4
3,178,765	-	ygiC	b3038	0.28	-1.4
3,178,900	-	ygiC	b3038	0.39	+0.3
3,178,900	-	ygiC	b3038	0.39	+0.7
3,178,900	-	ygiC	b3038	0.39	+0.1
3,178,927	+	ygiC	b3038	0.42	-1.2
3,178,927	+	ygiC	b3038	0.42	+1.4
3,178,946	+	ygiC	b3038	0.43	+0.2
3,178,989	+	ygiC	b3038	0.47	-0.4
3,178,997	-	ygiC	b3038	0.48	-1.8
3,179,016	+	ygiC	b3038	0.49	-1.0
3,179,016	+	ygiC	b3038	0.49	+1.0
3,179,016	+	ygiC	b3038	0.49	+1.4
3,179,016	+	ygiC	b3038	0.49	-0.2
3,179,024	-	ygiC	b3038	0.50	-0.1
3,179,026	+	ygiC	b3038	0.50	-1.3
3,179,057	+	ygiC	b3038	0.53	+0.8
3,179,078	-	ygiC	b3038	0.55	-0.8
3,179,078	-	ygiC	b3038	0.55	+1.4
3,179,105	+	ygiC	b3038	0.57	-0.6
3,179,179	-	ygiC	b3038	0.63	+0.9
3,179,179	-	ygiC	b3038	0.63	-1.5
3,179,196	+	ygiC	b3038	0.65	+0.4
3,179,196	+	ygiC	b3038	0.65	+0.2
3,179,253	+	ygiC	b3038	0.70	-0.1
3,179,482	+	ygiC	b3038	0.89	-0.2
3,179,511	-				-0.6
3,179,511	-				+1.4
3,179,545	+				+0.4
3,179,545	+				-1.4
3,179,578	-				-0.3
3,179,608	+				+0.3
3,179,650	-				-0.9
3,179,650	-				+0.1
3,179,892	+	ygiD	b3039	0.32	-1.6
3,179,892	+	ygiD	b3039	0.32	+1.4
3,179,915	-	ygiD	b3039	0.35	-1.4
3,180,042	-	ygiD	b3039	0.51	+0.6
3,180,068	+	ygiD	b3039	0.54	-1.5
3,180,068	+	ygiD	b3039	0.54	-2.6
3,180,121	-	ygiD	b3039	0.61	-1.6
3,180,147	+	ygiD	b3039	0.64	+1.4
3,180,147	+	ygiD	b3039	0.64	-0.9
3,180,152	+	ygiD	b3039	0.65	-1.6
3,180,188	+	ygiD	b3039	0.69	+0.2
3,180,188	+	ygiD	b3039	0.69	-0.6
3,180,197	+	ygiD	b3039	0.70	-0.6
3,180,319	+	ygiD	b3039	0.86	-0.6
3,180,338	-	ygiD	b3039	0.88	+0.1
3,180,379	+				-1.3
3,180,425	-				-0.4
3,180,431	+				+0.4
3,180,490	+				+0.6
3,180,595	-				-1.6
3,180,712	-	ygiE	b3040	0.18	-0.2
3,180,782	-	ygiE	b3040	0.27	+0.4
3,180,782	-	ygiE	b3040	0.27	+0.4
3,180,814	+	ygiE	b3040	0.31	-0.6
3,180,831	+	ygiE	b3040	0.33	+1.0
3,180,831	+	ygiE	b3040	0.33	+1.4
3,180,929	-	ygiE	b3040	0.46	-0.8
3,180,931	-	ygiE	b3040	0.46	-0.9
3,180,931	-	ygiE	b3040	0.46	+1.2
3,180,973	+	ygiE	b3040	0.52	-0.0
3,180,995	+	ygiE	b3040	0.55	-0.6
3,181,053	+	ygiE	b3040	0.62	+1.6
3,181,053	+	ygiE	b3040	0.62	-1.2
3,181,066	+	ygiE	b3040	0.64	-0.9
3,181,066	+	ygiE	b3040	0.64	-0.6
3,181,125	+	ygiE	b3040	0.71	+1.0
3,181,125	+	ygiE	b3040	0.71	-0.1
3,181,127	+	ygiE	b3040	0.72	-0.8
3,181,127	+	ygiE	b3040	0.72	+2.7
3,181,127	+	ygiE	b3040	0.72	-1.4
3,181,144	-	ygiE	b3040	0.74	+0.5
3,181,166	+	ygiE	b3040	0.77	+0.2
3,181,208	-	ygiE	b3040	0.82	-0.5
3,181,273	-				-0.6
3,181,273	-				+0.4
3,181,275	+				-0.8
3,181,275	+				+0.8
3,181,277	+				+0.4
3,181,282	+				-0.9
3,181,283	+				-1.2
3,181,283	-				-0.4
3,181,285	+				+1.8
3,181,285	+				-2.2
3,181,285	-				+0.4
3,181,288	-				+1.1
3,181,288	-				-0.6
3,181,290	+				-0.2
3,181,291	-				+0.2
3,181,295	+				-0.4
3,181,295	-				+0.8
3,181,295	-				-1.6
3,181,311	+				+0.4
3,181,311	+				+1.4
3,181,311	+				+0.1
3,181,312	-				-0.4
3,181,317	-				+2.7
3,181,319	-				-1.2
3,181,368	-				-0.4
3,181,375	+				+0.4
3,181,375	+				+0.4
3,181,377	-				-0.4
3,181,379	+				+1.0
3,181,407	-				+0.4
3,181,408	-				+0.4
3,181,408	-				-0.6
3,181,412	+				-0.4
3,181,412	+				-2.9
3,181,424	+				+0.4
3,181,424	+				-0.9
3,181,429	+				-0.9