Strain Fitness in Escherichia coli BW25113 around b2663

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
2,791,324	-	gabT	b2662	0.44	+0.5
2,791,454	+	gabT	b2662	0.54	+0.3
2,791,462	-	gabT	b2662	0.55	-0.5
2,791,487	+	gabT	b2662	0.57	-0.3
2,791,509	+	gabT	b2662	0.59	+0.1
2,791,532	-	gabT	b2662	0.60	-1.3
2,791,597	-	gabT	b2662	0.66	-0.3
2,791,597	-	gabT	b2662	0.66	-2.7
2,791,688	+	gabT	b2662	0.73	+1.1
2,791,862	+	gabT	b2662	0.86	-1.3
2,791,862	+	gabT	b2662	0.86	+0.1
2,791,952	+				+0.6
2,791,952	+				+0.3
2,791,952	+				+0.5
2,791,952	+				+1.9
2,791,954	+				+0.4
2,792,002	-				-0.7
2,792,011	-				+1.1
2,792,107	-				-0.1
2,792,107	-				+1.6
2,792,136	-				-1.0
2,792,136	-				-0.3
2,792,299	+				+0.3
2,792,498	-	gabP	b2663	0.16	-0.6
2,792,569	-	gabP	b2663	0.21	-0.5
2,792,576	+	gabP	b2663	0.21	-0.0
2,792,669	+	gabP	b2663	0.28	-0.4
2,792,680	+	gabP	b2663	0.29	+1.1
2,792,681	+	gabP	b2663	0.29	+0.9
2,792,681	+	gabP	b2663	0.29	+2.9
2,792,687	-	gabP	b2663	0.29	+0.3
2,792,735	+	gabP	b2663	0.33	+0.8
2,792,735	+	gabP	b2663	0.33	+0.4
2,792,791	-	gabP	b2663	0.37	-0.3
2,792,815	+	gabP	b2663	0.39	+0.6
2,792,815	+	gabP	b2663	0.39	+0.3
2,792,815	+	gabP	b2663	0.39	+0.3
2,792,821	-	gabP	b2663	0.39	+0.4
2,792,839	+	gabP	b2663	0.40	-0.2
2,792,839	+	gabP	b2663	0.40	-0.3
2,792,849	+	gabP	b2663	0.41	+1.1
2,792,881	+	gabP	b2663	0.43	-0.2
2,792,884	-	gabP	b2663	0.43	-0.0
2,792,889	-	gabP	b2663	0.44	+0.3
2,792,901	-	gabP	b2663	0.45	-0.3
2,792,926	+	gabP	b2663	0.46	+0.8
2,792,995	-	gabP	b2663	0.51	-0.1
2,793,010	-	gabP	b2663	0.52	+0.3
2,793,010	-	gabP	b2663	0.52	+1.1
2,793,065	+	gabP	b2663	0.56	+0.0
2,793,081	+	gabP	b2663	0.58	-1.7
2,793,094	-	gabP	b2663	0.58	+2.6
2,793,100	+	gabP	b2663	0.59	+1.3
2,793,100	+	gabP	b2663	0.59	-0.7
2,793,100	+	gabP	b2663	0.59	-0.2
2,793,100	+	gabP	b2663	0.59	+0.6
2,793,100	+	gabP	b2663	0.59	-0.1
2,793,100	+	gabP	b2663	0.59	+0.7
2,793,100	+	gabP	b2663	0.59	+1.1
2,793,100	+	gabP	b2663	0.59	+0.3
2,793,100	+	gabP	b2663	0.59	+0.3
2,793,108	-	gabP	b2663	0.59	-0.5
2,793,108	-	gabP	b2663	0.59	-0.3
2,793,108	-	gabP	b2663	0.59	-0.7
2,793,108	-	gabP	b2663	0.59	+0.3
2,793,108	-	gabP	b2663	0.59	+0.4
2,793,108	-	gabP	b2663	0.59	-1.5
2,793,108	-	gabP	b2663	0.59	-0.7
2,793,130	+	gabP	b2663	0.61	+0.5
2,793,130	+	gabP	b2663	0.61	-0.3
2,793,144	+	gabP	b2663	0.62	+0.7
2,793,159	-	gabP	b2663	0.63	-0.1
2,793,159	-	gabP	b2663	0.63	+1.9
2,793,182	-	gabP	b2663	0.65	+0.9
2,793,184	+	gabP	b2663	0.65	+1.3
2,793,186	+	gabP	b2663	0.65	+0.3
2,793,186	+				+1.9
2,793,186	+	gabP	b2663	0.65	-1.0
2,793,186	+	gabP	b2663	0.65	+0.1
2,793,187	-	gabP	b2663	0.65	-1.0
2,793,189	+	gabP	b2663	0.65	+0.0
2,793,189	+	gabP	b2663	0.65	+0.0
2,793,192	-	gabP	b2663	0.65	-0.1
2,793,192	-	gabP	b2663	0.65	-2.0
2,793,194	-	gabP	b2663	0.66	-0.1
2,793,194	-	gabP	b2663	0.66	+0.5
2,793,194	-	gabP	b2663	0.66	+0.5
2,793,195	-	gabP	b2663	0.66	+0.2
2,793,197	-	gabP	b2663	0.66	-0.3
2,793,197	-	gabP	b2663	0.66	+0.3
2,793,197	-	gabP	b2663	0.66	+0.7
2,793,197	-	gabP	b2663	0.66	+2.3
2,793,197	-	gabP	b2663	0.66	-1.3
2,793,197	-	gabP	b2663	0.66	+0.9
2,793,215	+	gabP	b2663	0.67	-1.3
2,793,254	+	gabP	b2663	0.70	-0.6
2,793,254	+	gabP	b2663	0.70	+0.4
2,793,266	+	gabP	b2663	0.71	+1.0
2,793,286	+	gabP	b2663	0.72	-0.9
2,793,286	+	gabP	b2663	0.72	+0.3
2,793,292	-	gabP	b2663	0.73	+0.9
2,793,292	-	gabP	b2663	0.73	-0.5
2,793,294	-	gabP	b2663	0.73	+0.9
2,793,294	-	gabP	b2663	0.73	-0.0
2,793,296	+	gabP	b2663	0.73	-0.7
2,793,304	+	gabP	b2663	0.73	+0.3
2,793,312	+	gabP	b2663	0.74	+2.1
2,793,315	-	gabP	b2663	0.74	+1.3
2,793,319	-	gabP	b2663	0.75	+1.3
2,793,330	+	gabP	b2663	0.75	+0.9
2,793,330	+	gabP	b2663	0.75	+0.6
2,793,330	-	gabP	b2663	0.75	+0.5
2,793,358	+	gabP	b2663	0.77	+1.1
2,793,379	+	gabP	b2663	0.79	-0.7
2,793,379	+	gabP	b2663	0.79	-0.0
2,793,387	-	gabP	b2663	0.79	+0.8
2,793,388	-	gabP	b2663	0.79	+0.3
2,793,388	-	gabP	b2663	0.79	-0.5
2,793,451	-	gabP	b2663	0.84	+0.0
2,793,487	+	gabP	b2663	0.87	-0.1
2,793,488	+	gabP	b2663	0.87	-0.1
2,793,490	-	gabP	b2663	0.87	-0.1
2,793,490	-	gabP	b2663	0.87	-0.0
2,793,491	-	gabP	b2663	0.87	+0.3
2,793,500	-	gabP	b2663	0.87	+0.8
2,793,502	-	gabP	b2663	0.88	+0.9
2,793,523	+	gabP	b2663	0.89	+0.4
2,793,535	+	gabP	b2663	0.90	-2.7
2,793,543	-				+0.3
2,793,543	-				+0.3
2,793,543	-				+0.7
2,793,557	+				+0.3
2,793,557	+				-0.7
2,793,565	+				-0.7
2,793,565	+				+1.5
2,793,605	-				+1.2
2,793,605	-				+0.9
2,793,605	-				-1.3
2,793,605	-				-1.3
2,793,605	-				+0.5
2,793,605	-				+0.1
2,793,663	+				+0.3
2,793,674	+				+0.7
2,793,674	+				-0.6
2,793,674	+				+0.7
2,793,680	+				-0.6
2,793,683	-				-1.3
2,793,686	+				+1.9
2,793,692	+				+0.5
2,793,694	-				+0.9
2,793,694	-				-0.5
2,793,699	+				+0.5
2,793,700	-				-0.5
2,793,716	-				-0.6
2,793,716	-				-0.3
2,793,725	-				+1.0
2,793,811	+	ygaE	b2664	0.17	+0.3
2,793,829	-	ygaE	b2664	0.20	+0.9
2,793,829	-	ygaE	b2664	0.20	+0.3
2,793,846	+	ygaE	b2664	0.23	+1.5
2,793,871	-				-0.7
2,793,906	+	ygaE	b2664	0.32	-1.3
2,793,906	+	ygaE	b2664	0.32	+1.3
2,793,954	+	ygaE	b2664	0.39	+1.0
2,793,990	+	ygaE	b2664	0.44	-1.3
2,794,041	-	ygaE	b2664	0.52	+0.7
2,794,085	-				+0.3
2,794,085	-				+0.3
2,794,239	+	ygaE	b2664	0.82	-1.3
2,794,239	+	ygaE	b2664	0.82	-0.9
2,794,271	+	ygaE	b2664	0.87	+7.6
2,794,299	+				+0.4
2,794,372	-				-0.3
2,794,372	-				+0.9
2,794,418	-	ygaU	b2665	0.13	-0.0
2,794,462	+	ygaU	b2665	0.23	+0.4
2,794,469	-	ygaU	b2665	0.24	-0.7
2,794,480	-	ygaU	b2665	0.27	-0.1
2,794,518	-	ygaU	b2665	0.35	+0.6
2,794,554	+	ygaU	b2665	0.43	+0.6
2,794,554	+	ygaU	b2665	0.43	-0.5
2,794,562	-	ygaU	b2665	0.45	+0.9
2,794,623	-	ygaU	b2665	0.59	-0.7
2,794,623	-	ygaU	b2665	0.59	-0.1
2,794,628	+	ygaU	b2665	0.60	-0.6