Strain Fitness in Pseudomonas sp. RS175 around PFR28_04902

Experiment: Adenosine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adenosine (C) 10 mM
5,596,925	+		PFR28_04900	0.27	-2.1
5,596,925	+		PFR28_04900	0.27	-2.8
5,596,925	+		PFR28_04900	0.27	-5.0
5,596,925	+		PFR28_04900	0.27	-4.1
5,596,925	+		PFR28_04900	0.27	-1.4
5,596,926	-		PFR28_04900	0.27	-2.8
5,596,970	+		PFR28_04900	0.33	-2.6
5,596,970	+		PFR28_04900	0.33	-1.2
5,596,970	+		PFR28_04900	0.33	-2.3
5,596,970	+		PFR28_04900	0.33	-2.2
5,596,971	-		PFR28_04900	0.33	-1.5
5,596,971	-		PFR28_04900	0.33	-2.0
5,596,971	-		PFR28_04900	0.33	-4.2
5,596,997	+		PFR28_04900	0.36	-2.3
5,596,997	+		PFR28_04900	0.36	-2.6
5,596,997	+		PFR28_04900	0.36	-3.5
5,596,997	+		PFR28_04900	0.36	-2.7
5,596,998	-		PFR28_04900	0.36	-3.3
5,596,998	-		PFR28_04900	0.36	-3.4
5,596,998	-		PFR28_04900	0.36	-1.8
5,596,998	-		PFR28_04900	0.36	-3.3
5,596,998	-		PFR28_04900	0.36	-2.8
5,596,998	-		PFR28_04900	0.36	-2.1
5,596,998	-		PFR28_04900	0.36	-2.1
5,596,998	-		PFR28_04900	0.36	-3.4
5,597,093	+		PFR28_04900	0.49	-1.7
5,597,094	-		PFR28_04900	0.49	-3.2
5,597,094	-		PFR28_04900	0.49	-3.1
5,597,254	+		PFR28_04900	0.71	-4.1
5,597,255	-		PFR28_04900	0.71	-0.9
5,597,282	+		PFR28_04900	0.74	-1.6
5,597,282	+		PFR28_04900	0.74	-1.3
5,597,282	+		PFR28_04900	0.74	-1.5
5,597,283	-		PFR28_04900	0.74	-2.7
5,597,318	+		PFR28_04900	0.79	-0.1
5,597,318	+		PFR28_04900	0.79	+0.4
5,597,319	-		PFR28_04900	0.79	-1.7
5,597,319	-		PFR28_04900	0.79	-2.9
5,597,319	-		PFR28_04900	0.79	-1.5
5,597,319	-		PFR28_04900	0.79	-2.5
5,597,319	-		PFR28_04900	0.79	-2.3
5,597,338	+		PFR28_04900	0.82	-1.7
5,597,338	+		PFR28_04900	0.82	-0.7
5,597,338	+		PFR28_04900	0.82	-0.9
5,597,339	-		PFR28_04900	0.82	-1.3
5,597,339	-		PFR28_04900	0.82	-3.4
5,597,339	-		PFR28_04900	0.82	-2.9
5,597,339	-		PFR28_04900	0.82	-3.2
5,597,339	-		PFR28_04900	0.82	-2.1
5,597,339	-		PFR28_04900	0.82	-3.0
5,597,369	+		PFR28_04900	0.86	-1.2
5,597,369	+		PFR28_04900	0.86	-2.5
5,597,369	+		PFR28_04900	0.86	-0.1
5,597,369	+		PFR28_04900	0.86	-0.7
5,597,369	+		PFR28_04900	0.86	-1.7
5,597,369	+		PFR28_04900	0.86	-1.2
5,597,370	-		PFR28_04900	0.86	-5.3
5,597,370	-		PFR28_04900	0.86	-5.6
5,597,578	+		PFR28_04901	0.21	-1.7
5,597,578	+		PFR28_04901	0.21	-1.2
5,597,578	+		PFR28_04901	0.21	+0.3
5,597,578	+		PFR28_04901	0.21	-0.6
5,597,578	+		PFR28_04901	0.21	-1.4
5,597,578	+		PFR28_04901	0.21	-1.8
5,597,579	-		PFR28_04901	0.21	-3.6
5,597,579	-		PFR28_04901	0.21	-2.8
5,597,579	-		PFR28_04901	0.21	-2.3
5,597,579	-		PFR28_04901	0.21	-2.4
5,597,579	-		PFR28_04901	0.21	-1.5
5,597,646	+		PFR28_04901	0.36	-1.6
5,597,646	+		PFR28_04901	0.36	+0.1
5,597,646	+		PFR28_04901	0.36	-0.5
5,597,647	-		PFR28_04901	0.37	-2.3
5,597,843	+		PFR28_04901	0.81	-1.1
5,597,843	+		PFR28_04901	0.81	-0.6
5,597,843	+		PFR28_04901	0.81	-0.1
5,597,883	+				-0.3
5,597,883	+				+0.1
5,597,884	-				-4.0
5,597,884	-				-2.8
5,597,884	-				-2.4
5,597,884	-				-3.4
5,597,884	-				-3.8
5,597,884	-				-4.4
5,597,920	+				-3.8
5,597,920	+				-1.5
5,597,920	+				-3.3
5,597,920	+				-0.1
5,597,920	+				-4.3
5,597,921	-				-3.7
5,598,005	+		PFR28_04902	0.12	-3.5
5,598,005	+		PFR28_04902	0.12	-4.3
5,598,010	+		PFR28_04902	0.12	-3.5
5,598,011	-		PFR28_04902	0.13	-1.1
5,598,011	-		PFR28_04902	0.13	-2.3
5,598,092	+		PFR28_04902	0.24	-1.4
5,598,092	+		PFR28_04902	0.24	-1.6
5,598,092	+		PFR28_04902	0.24	-2.1
5,598,093	-		PFR28_04902	0.24	-1.6
5,598,206	+		PFR28_04902	0.40	-1.1
5,598,206	+		PFR28_04902	0.40	-3.1
5,598,207	-		PFR28_04902	0.40	+0.7
5,598,207	-		PFR28_04902	0.40	-2.3
5,598,207	-		PFR28_04902	0.40	-1.4
5,598,207	-		PFR28_04902	0.40	-2.1
5,598,207	-		PFR28_04902	0.40	-2.7
5,598,207	-		PFR28_04902	0.40	+1.2
5,598,207	-		PFR28_04902	0.40	-3.3
5,598,207	-		PFR28_04902	0.40	-1.9
5,598,338	+		PFR28_04902	0.58	-0.1
5,598,339	-		PFR28_04902	0.59	-1.7
5,598,367	+		PFR28_04902	0.62	-0.7
5,598,368	-		PFR28_04902	0.63	-2.7
5,598,434	+		PFR28_04902	0.72	-1.2
5,598,434	+		PFR28_04902	0.72	-2.1
5,598,434	+		PFR28_04902	0.72	-0.5
5,598,435	-		PFR28_04902	0.72	-1.6
5,598,470	+		PFR28_04902	0.77	-2.6
5,598,470	+		PFR28_04902	0.77	-0.7
5,598,470	+		PFR28_04902	0.77	-2.5
5,598,470	+		PFR28_04902	0.77	-1.0
5,598,470	+		PFR28_04902	0.77	-1.0
5,598,470	+		PFR28_04902	0.77	-1.7
5,598,471	-		PFR28_04902	0.77	-3.5
5,598,471	-		PFR28_04902	0.77	-2.3
5,598,471	-		PFR28_04902	0.77	-0.6
5,598,471	-		PFR28_04902	0.77	-1.1
5,598,471	-		PFR28_04902	0.77	-0.9
5,598,471	-		PFR28_04902	0.77	-3.1
5,598,612	+				-4.1
5,598,612	+				-1.5
5,598,612	+				-2.0
5,598,612	+				-2.2
5,598,612	+				-1.1
5,598,612	+				-1.9
5,598,613	-				-2.8
5,598,613	-				-0.9
5,598,613	-				-2.9
5,598,613	-				-0.4
5,598,613	-				-1.5
5,598,613	-				-3.1
5,598,740	-		PFR28_04903	0.40	-1.7
5,598,740	-		PFR28_04903	0.40	+0.0
5,598,803	+		PFR28_04903	0.60	-2.5
5,598,803	+		PFR28_04903	0.60	-3.0
5,598,803	+		PFR28_04903	0.60	-4.4
5,598,803	+		PFR28_04903	0.60	-0.7
5,598,804	-		PFR28_04903	0.60	-1.1
5,598,804	-		PFR28_04903	0.60	-2.7
5,598,826	+		PFR28_04903	0.67	-2.6
5,598,826	+		PFR28_04903	0.67	-3.2
5,598,826	+		PFR28_04903	0.67	-4.7
5,598,826	+		PFR28_04903	0.67	-0.8
5,598,826	+		PFR28_04903	0.67	-1.7
5,598,826	+		PFR28_04903	0.67	-1.8
5,598,827	-		PFR28_04903	0.67	-1.6
5,598,827	-		PFR28_04903	0.67	-3.0
5,598,827	-		PFR28_04903	0.67	-2.3
5,598,827	-		PFR28_04903	0.67	-1.4
5,598,827	-		PFR28_04903	0.67	-0.3
5,598,827	-		PFR28_04903	0.67	-2.0
5,598,848	+				-2.6
5,598,848	+				-0.6
5,598,848	+				-2.0
5,598,848	+				-4.2
5,598,848	+				-1.9
5,598,848	+				-4.1
5,598,848	+				-1.7
5,598,848	+				-2.8
5,598,848	+				-2.0
5,598,848	+				-2.4
5,598,848	+				-2.4
5,598,848	+				-3.2
5,598,849	-				-1.4
5,598,849	-				-1.4
5,598,849	-				-0.6
5,598,849	-				-1.4
5,598,849	-				-1.7
5,598,849	-				+0.4
5,598,849	-				-2.1
5,598,849	-				-3.3
5,598,856	+				-2.4
5,598,856	+				+1.4
5,598,856	+				-3.6
5,598,856	+				-1.9
5,598,856	+				-2.4
5,598,904	+				-1.4
5,598,904	+				-1.4
5,598,904	+				-2.3
5,598,905	-				-1.1
5,598,905	-				-2.5
5,598,928	+				-2.3
5,598,929	-				-1.2
5,598,929	-				+0.8
5,599,121	+		PFR28_04904	0.30	-2.0
5,599,121	+		PFR28_04904	0.30	-1.5
5,599,121	+		PFR28_04904	0.30	-4.1
5,599,121	+		PFR28_04904	0.30	-2.4
5,599,122	-		PFR28_04904	0.30	-3.3
5,599,122	-		PFR28_04904	0.30	-2.0
5,599,122	-		PFR28_04904	0.30	-3.8
5,599,122	-		PFR28_04904	0.30	-4.2
5,599,146	-		PFR28_04904	0.32	-4.2
5,599,190	+		PFR28_04904	0.37	-4.0
5,599,190	+		PFR28_04904	0.37	-3.4
5,599,306	-		PFR28_04904	0.50	-3.2
5,599,397	+		PFR28_04904	0.59	-3.6
5,599,398	-		PFR28_04904	0.59	-5.2
5,599,415	+		PFR28_04904	0.61	-4.6
5,599,416	-		PFR28_04904	0.61	-3.9
5,599,416	-		PFR28_04904	0.61	-2.0
5,599,416	-		PFR28_04904	0.61	-3.0
5,599,441	-		PFR28_04904	0.64	-3.6
5,599,441	-		PFR28_04904	0.64	-1.1
5,599,561	+		PFR28_04904	0.77	-1.5
5,599,561	+		PFR28_04904	0.77	-1.0
5,599,562	-		PFR28_04904	0.77	-2.2
5,599,562	-		PFR28_04904	0.77	-3.3
5,599,562	-		PFR28_04904	0.77	-1.7