Strain Fitness in Pseudomonas sp. RS175 around PFR28_04517

Experiment: Adenosine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adenosine (C) 10 mM
5,155,414	+		PFR28_04516	0.71	-0.0
5,155,426	+		PFR28_04516	0.71	+1.2
5,155,622	-		PFR28_04516	0.81	+0.6
5,155,637	-		PFR28_04516	0.81	+1.0
5,155,637	-		PFR28_04516	0.81	+0.3
5,155,717	+		PFR28_04516	0.85	-0.2
5,155,717	+		PFR28_04516	0.85	-1.7
5,155,717	+		PFR28_04516	0.85	+1.0
5,155,717	+		PFR28_04516	0.85	-0.8
5,155,718	-		PFR28_04516	0.85	-0.1
5,155,718	-		PFR28_04516	0.85	+1.5
5,155,718	-		PFR28_04516	0.85	-0.6
5,155,718	-		PFR28_04516	0.85	-0.9
5,155,725	+		PFR28_04516	0.86	+0.3
5,155,726	-		PFR28_04516	0.86	+0.2
5,155,814	-		PFR28_04516	0.90	+0.1
5,155,867	+				-0.4
5,155,867	+				-0.5
5,155,867	+				+1.4
5,155,867	+				-0.2
5,155,867	+				+0.2
5,155,867	+				+0.4
5,155,867	+				+0.4
5,155,867	+				-0.1
5,155,868	-				-0.4
5,155,868	-				-0.6
5,155,868	-				+0.0
5,155,868	-				-0.4
5,155,868	-				+0.0
5,155,868	-				-0.4
5,155,869	+				+0.3
5,155,870	-				-0.1
5,155,870	-				-0.3
5,155,870	-				+0.1
5,155,870	-				+0.3
5,156,197	-				+0.4
5,156,197	-				-0.1
5,156,362	+				-1.4
5,156,362	+				-1.0
5,156,362	+				-0.3
5,156,362	+				-0.2
5,156,363	-				-1.6
5,156,363	-				-0.2
5,156,363	-				-2.6
5,156,363	-				-3.8
5,156,363	-				-2.0
5,156,363	-				-2.8
5,156,505	+		PFR28_04517	0.16	-2.5
5,156,505	+		PFR28_04517	0.16	-0.4
5,156,506	-		PFR28_04517	0.16	-0.9
5,156,506	-		PFR28_04517	0.16	-2.3
5,156,506	-		PFR28_04517	0.16	-2.1
5,156,506	-		PFR28_04517	0.16	-2.7
5,156,522	+		PFR28_04517	0.17	-3.7
5,156,522	+		PFR28_04517	0.17	-3.5
5,156,522	+		PFR28_04517	0.17	-2.7
5,156,522	+		PFR28_04517	0.17	-0.5
5,156,522	+		PFR28_04517	0.17	-3.2
5,156,523	-		PFR28_04517	0.17	-3.0
5,156,523	-		PFR28_04517	0.17	-2.0
5,156,523	-		PFR28_04517	0.17	-1.9
5,156,523	-		PFR28_04517	0.17	-1.5
5,156,523	-		PFR28_04517	0.17	-0.9
5,156,577	-		PFR28_04517	0.20	-2.2
5,156,738	+		PFR28_04517	0.29	-0.9
5,156,738	+		PFR28_04517	0.29	-1.8
5,156,738	+		PFR28_04517	0.29	+0.2
5,156,738	+		PFR28_04517	0.29	-1.6
5,156,738	+		PFR28_04517	0.29	-0.5
5,156,738	+		PFR28_04517	0.29	-2.4
5,156,738	+		PFR28_04517	0.29	-2.7
5,156,739	-		PFR28_04517	0.29	-0.7
5,156,739	-		PFR28_04517	0.29	-0.6
5,156,739	-		PFR28_04517	0.29	-1.6
5,156,739	-		PFR28_04517	0.29	-1.0
5,156,739	-		PFR28_04517	0.29	-2.2
5,156,915	+		PFR28_04517	0.39	-2.1
5,156,916	-		PFR28_04517	0.39	-0.7
5,156,945	+		PFR28_04517	0.41	-2.1
5,156,945	+		PFR28_04517	0.41	-2.1
5,156,946	-		PFR28_04517	0.41	-1.2
5,156,962	+		PFR28_04517	0.41	-0.6
5,156,962	+		PFR28_04517	0.41	+0.9
5,156,963	-		PFR28_04517	0.42	-0.6
5,156,963	-		PFR28_04517	0.42	-1.5
5,156,963	-		PFR28_04517	0.42	-3.5
5,156,963	-		PFR28_04517	0.42	-1.3
5,157,188	+		PFR28_04517	0.54	-3.5
5,157,188	+		PFR28_04517	0.54	-2.6
5,157,188	+		PFR28_04517	0.54	-0.7
5,157,189	-		PFR28_04517	0.54	-1.4
5,157,189	-		PFR28_04517	0.54	-1.1
5,157,189	-		PFR28_04517	0.54	-2.2
5,157,189	-		PFR28_04517	0.54	-1.6
5,157,189	-		PFR28_04517	0.54	-0.8
5,157,189	-		PFR28_04517	0.54	-1.3
5,157,207	-		PFR28_04517	0.55	-3.0
5,157,212	+		PFR28_04517	0.55	-1.3
5,157,212	+		PFR28_04517	0.55	-1.9
5,157,213	-		PFR28_04517	0.55	-1.5
5,157,213	-		PFR28_04517	0.55	-2.2
5,157,213	-		PFR28_04517	0.55	-2.2
5,157,213	-		PFR28_04517	0.55	-3.4
5,157,213	-		PFR28_04517	0.55	-1.5
5,157,470	+		PFR28_04517	0.70	+1.2
5,157,564	+		PFR28_04517	0.75	-1.4
5,157,564	+		PFR28_04517	0.75	-2.0
5,157,565	-		PFR28_04517	0.75	-1.9
5,157,565	-		PFR28_04517	0.75	-2.7
5,157,565	-		PFR28_04517	0.75	+0.1
5,157,565	-		PFR28_04517	0.75	-2.2
5,157,585	-		PFR28_04517	0.76	-2.2
5,157,585	-		PFR28_04517	0.76	-1.4
5,157,585	-		PFR28_04517	0.76	-1.4
5,157,585	-		PFR28_04517	0.76	-1.3
5,157,648	+		PFR28_04517	0.79	-2.4
5,157,682	+		PFR28_04517	0.81	-1.7
5,157,741	-		PFR28_04517	0.85	-0.1
5,157,900	-				-0.6
5,157,928	-				-2.0
5,157,990	+				-2.2
5,157,991	-				-2.0
5,157,991	-				-1.8
5,157,991	-				+1.5
5,158,001	-				-1.1
5,158,034	+				+0.1
5,158,106	+				-0.8
5,158,106	+				-3.8
5,158,106	+				-2.7
5,158,106	+				-0.7
5,158,106	+				-1.4
5,158,107	-				-1.0
5,158,107	-				-1.1
5,158,107	-				-1.8
5,158,143	+				-0.2
5,158,144	-				-0.8
5,158,193	+		PFR28_04518	0.11	-1.1
5,158,193	+		PFR28_04518	0.11	+0.3
5,158,194	-		PFR28_04518	0.11	-0.9
5,158,310	+		PFR28_04518	0.20	-1.2
5,158,310	+		PFR28_04518	0.20	-0.8
5,158,311	-		PFR28_04518	0.20	+0.1
5,158,311	-		PFR28_04518	0.20	-1.2
5,158,311	-		PFR28_04518	0.20	-2.7
5,158,311	-		PFR28_04518	0.20	+0.0
5,158,337	+		PFR28_04518	0.21	-0.3
5,158,379	+		PFR28_04518	0.24	-1.6
5,158,380	-		PFR28_04518	0.25	-0.7
5,158,383	-		PFR28_04518	0.25	+0.5
5,158,498	+		PFR28_04518	0.33	-0.8
5,158,499	-		PFR28_04518	0.33	-0.3
5,158,534	-		PFR28_04518	0.35	-0.2
5,158,601	+		PFR28_04518	0.40	-1.3
5,158,601	+		PFR28_04518	0.40	-3.7
5,158,601	+		PFR28_04518	0.40	-2.2
5,158,601	+		PFR28_04518	0.40	-1.0
5,158,601	+		PFR28_04518	0.40	+0.1
5,158,601	+		PFR28_04518	0.40	-1.1
5,158,601	+		PFR28_04518	0.40	-2.0
5,158,601	+		PFR28_04518	0.40	-1.0
5,158,601	+		PFR28_04518	0.40	-2.0
5,158,602	-		PFR28_04518	0.40	-0.1
5,158,602	-		PFR28_04518	0.40	-2.5
5,158,602	-		PFR28_04518	0.40	-1.9
5,158,602	-		PFR28_04518	0.40	-1.9
5,158,602	-		PFR28_04518	0.40	-1.5
5,158,602	-		PFR28_04518	0.40	-1.3
5,158,602	-		PFR28_04518	0.40	-1.9
5,158,602	-		PFR28_04518	0.40	+0.4
5,158,649	+		PFR28_04518	0.44	-1.5
5,158,691	+		PFR28_04518	0.46	-1.2
5,158,691	+		PFR28_04518	0.46	-0.5
5,158,692	-		PFR28_04518	0.47	-0.8
5,158,950	+		PFR28_04518	0.65	-1.1