Experiment: Adenosine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04421 and PFR28_04422 are separated by 12 nucleotides PFR28_04422 and PFR28_04423 are separated by 167 nucleotides PFR28_04423 and PFR28_04424 are separated by 57 nucleotides
PFR28_04421: PFR28_04421 - hypothetical protein, at 5,034,318 to 5,035,181
_04421
PFR28_04422: PFR28_04422 - Guanylate kinase, at 5,035,194 to 5,035,814
_04422
PFR28_04423: PFR28_04423 - DNA-directed RNA polymerase subunit omega, at 5,035,982 to 5,036,245
_04423
PFR28_04424: PFR28_04424 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 5,036,303 to 5,038,408
_04424
Position (kb)
5035
5036 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5034.224 kb on - strand at 5034.224 kb on - strand at 5034.224 kb on - strand at 5034.255 kb on + strand at 5035.112 kb on + strand at 5035.846 kb on + strand at 5035.846 kb on + strand at 5035.846 kb on + strand at 5035.846 kb on + strand at 5035.846 kb on + strand at 5035.846 kb on + strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.847 kb on - strand at 5035.978 kb on + strand at 5035.978 kb on + strand at 5035.978 kb on + strand at 5035.978 kb on + strand at 5035.978 kb on + strand at 5036.010 kb on + strand, within PFR28_04423 at 5036.010 kb on + strand, within PFR28_04423 at 5036.162 kb on + strand, within PFR28_04423 at 5036.162 kb on + strand, within PFR28_04423 at 5036.163 kb on - strand, within PFR28_04423 at 5036.243 kb on + strand at 5036.243 kb on + strand at 5036.243 kb on + strand at 5036.249 kb on + strand at 5036.249 kb on + strand at 5036.249 kb on + strand at 5036.313 kb on + strand at 5036.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM remove 5,034,224 - +0.5 5,034,224 - +0.4 5,034,224 - +0.8 5,034,255 + +1.6 5,035,112 + +1.4 5,035,846 + +1.5 5,035,846 + -0.3 5,035,846 + -0.3 5,035,846 + +0.3 5,035,846 + -0.5 5,035,846 + +0.2 5,035,847 - +0.4 5,035,847 - -0.2 5,035,847 - +0.6 5,035,847 - +0.2 5,035,847 - +0.9 5,035,847 - -0.4 5,035,847 - +0.2 5,035,847 - -0.4 5,035,847 - +1.0 5,035,847 - +0.2 5,035,847 - +0.2 5,035,847 - -0.3 5,035,847 - -0.2 5,035,978 + -1.7 5,035,978 + +1.4 5,035,978 + -3.4 5,035,978 + -0.8 5,035,978 + -3.1 5,036,010 + PFR28_04423 0.11 +0.5 5,036,010 + PFR28_04423 0.11 -0.3 5,036,162 + PFR28_04423 0.68 +0.3 5,036,162 + PFR28_04423 0.68 +0.0 5,036,163 - PFR28_04423 0.69 +0.0 5,036,243 + -0.5 5,036,243 + -1.3 5,036,243 + +0.3 5,036,249 + +0.9 5,036,249 + +0.0 5,036,249 + -1.2 5,036,313 + -0.1 5,036,314 - -1.4
Or see this region's nucleotide sequence