Strain Fitness in Pseudomonas sp. RS175 around PFR28_03640

Experiment: Adenosine (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_03638 and PFR28_03639 are separated by 10 nucleotidesPFR28_03639 and PFR28_03640 are separated by 3 nucleotidesPFR28_03640 and PFR28_03641 are separated by 175 nucleotidesPFR28_03641 and PFR28_03642 are separated by 2 nucleotides PFR28_03638: PFR28_03638 - C4-dicarboxylic acid transporter DauA, at 4,200,296 to 4,202,020 _03638 PFR28_03639: PFR28_03639 - hypothetical protein, at 4,202,031 to 4,202,504 _03639 PFR28_03640: PFR28_03640 - Hypoxanthine-guanine phosphoribosyltransferase, at 4,202,508 to 4,203,065 _03640 PFR28_03641: PFR28_03641 - Uracil phosphoribosyltransferase, at 4,203,241 to 4,203,879 _03641 PFR28_03642: PFR28_03642 - Uracil permease, at 4,203,882 to 4,205,156 _03642 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4201.561 kb on - strand, within PFR28_03638at 4201.561 kb on - strand, within PFR28_03638at 4201.561 kb on - strand, within PFR28_03638at 4201.672 kb on + strand, within PFR28_03638at 4201.672 kb on + strand, within PFR28_03638at 4201.673 kb on - strand, within PFR28_03638at 4201.695 kb on - strand, within PFR28_03638at 4201.853 kb on + strandat 4201.955 kb on + strandat 4201.955 kb on + strandat 4201.955 kb on + strandat 4201.956 kb on - strandat 4201.956 kb on - strandat 4201.956 kb on - strandat 4201.956 kb on - strandat 4201.956 kb on - strandat 4202.029 kb on + strandat 4202.029 kb on + strandat 4202.030 kb on - strandat 4202.030 kb on - strandat 4202.030 kb on - strandat 4202.030 kb on - strandat 4202.191 kb on + strand, within PFR28_03639at 4202.191 kb on + strand, within PFR28_03639at 4202.191 kb on + strand, within PFR28_03639at 4202.191 kb on + strand, within PFR28_03639at 4202.192 kb on - strand, within PFR28_03639at 4202.192 kb on - strand, within PFR28_03639at 4202.356 kb on + strand, within PFR28_03639at 4202.356 kb on + strand, within PFR28_03639at 4202.356 kb on + strand, within PFR28_03639at 4202.357 kb on - strand, within PFR28_03639at 4202.357 kb on - strand, within PFR28_03639at 4202.357 kb on - strand, within PFR28_03639at 4202.357 kb on - strand, within PFR28_03639at 4202.357 kb on - strand, within PFR28_03639at 4202.357 kb on - strand, within PFR28_03639at 4202.417 kb on + strand, within PFR28_03639at 4202.417 kb on + strand, within PFR28_03639at 4202.417 kb on + strand, within PFR28_03639at 4202.417 kb on + strand, within PFR28_03639at 4202.418 kb on - strand, within PFR28_03639at 4202.418 kb on - strand, within PFR28_03639at 4202.509 kb on + strandat 4202.509 kb on + strandat 4202.510 kb on - strandat 4202.510 kb on - strandat 4202.510 kb on - strandat 4202.510 kb on - strandat 4202.532 kb on - strandat 4202.532 kb on - strandat 4202.560 kb on + strandat 4202.560 kb on + strandat 4202.560 kb on + strandat 4202.560 kb on + strandat 4202.560 kb on + strandat 4202.560 kb on + strandat 4202.561 kb on - strandat 4202.561 kb on - strandat 4202.561 kb on - strandat 4202.561 kb on - strandat 4202.561 kb on - strandat 4202.561 kb on - strandat 4202.573 kb on - strand, within PFR28_03640at 4202.582 kb on + strand, within PFR28_03640at 4202.582 kb on + strand, within PFR28_03640at 4202.582 kb on + strand, within PFR28_03640at 4202.582 kb on + strand, within PFR28_03640at 4202.583 kb on - strand, within PFR28_03640at 4202.583 kb on - strand, within PFR28_03640at 4202.583 kb on - strand, within PFR28_03640at 4202.583 kb on - strand, within PFR28_03640at 4202.584 kb on + strand, within PFR28_03640at 4202.584 kb on + strand, within PFR28_03640at 4202.584 kb on + strand, within PFR28_03640at 4202.585 kb on - strand, within PFR28_03640at 4202.585 kb on - strand, within PFR28_03640at 4202.585 kb on - strand, within PFR28_03640at 4202.585 kb on - strand, within PFR28_03640at 4202.585 kb on - strand, within PFR28_03640at 4202.585 kb on - strand, within PFR28_03640at 4202.851 kb on + strand, within PFR28_03640at 4202.852 kb on - strand, within PFR28_03640at 4202.878 kb on + strand, within PFR28_03640at 4203.010 kb on + strandat 4203.010 kb on + strandat 4203.011 kb on - strandat 4203.011 kb on - strandat 4203.044 kb on + strandat 4203.121 kb on + strandat 4203.158 kb on + strandat 4203.168 kb on + strandat 4203.169 kb on - strandat 4203.175 kb on + strandat 4203.175 kb on + strandat 4203.176 kb on - strandat 4203.176 kb on - strandat 4203.176 kb on - strandat 4203.177 kb on + strandat 4203.177 kb on + strandat 4203.177 kb on + strandat 4203.178 kb on - strandat 4203.178 kb on - strandat 4203.195 kb on + strandat 4203.201 kb on - strandat 4203.279 kb on + strandat 4203.279 kb on + strandat 4203.279 kb on + strandat 4203.280 kb on - strandat 4203.280 kb on - strandat 4203.280 kb on - strandat 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.361 kb on + strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.362 kb on - strand, within PFR28_03641at 4203.428 kb on + strand, within PFR28_03641at 4203.428 kb on + strand, within PFR28_03641at 4203.504 kb on + strand, within PFR28_03641at 4203.504 kb on + strand, within PFR28_03641at 4203.504 kb on + strand, within PFR28_03641at 4203.577 kb on + strand, within PFR28_03641at 4203.577 kb on + strand, within PFR28_03641at 4203.577 kb on + strand, within PFR28_03641at 4203.577 kb on + strand, within PFR28_03641at 4203.577 kb on + strand, within PFR28_03641at 4203.577 kb on + strand, within PFR28_03641at 4203.578 kb on - strand, within PFR28_03641at 4203.578 kb on - strand, within PFR28_03641at 4203.767 kb on + strand, within PFR28_03641at 4203.775 kb on + strand, within PFR28_03641at 4203.775 kb on + strand, within PFR28_03641at 4203.775 kb on + strand, within PFR28_03641at 4203.775 kb on + strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.776 kb on - strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.814 kb on + strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4203.815 kb on - strand, within PFR28_03641at 4204.010 kb on + strand, within PFR28_03642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM
remove
4,201,561 - PFR28_03638 0.73 -1.0
4,201,561 - PFR28_03638 0.73 +0.8
4,201,561 - PFR28_03638 0.73 +0.5
4,201,672 + PFR28_03638 0.80 +0.1
4,201,672 + PFR28_03638 0.80 -1.2
4,201,673 - PFR28_03638 0.80 +0.3
4,201,695 - PFR28_03638 0.81 -0.3
4,201,853 + +0.4
4,201,955 + +0.4
4,201,955 + +1.2
4,201,955 + +0.6
4,201,956 - -1.6
4,201,956 - +0.0
4,201,956 - -0.2
4,201,956 - -1.0
4,201,956 - -3.7
4,202,029 + -0.0
4,202,029 + +1.5
4,202,030 - -1.3
4,202,030 - -0.4
4,202,030 - -0.4
4,202,030 - -0.5
4,202,191 + PFR28_03639 0.34 -0.0
4,202,191 + PFR28_03639 0.34 +0.1
4,202,191 + PFR28_03639 0.34 -0.2
4,202,191 + PFR28_03639 0.34 +0.6
4,202,192 - PFR28_03639 0.34 -1.0
4,202,192 - PFR28_03639 0.34 +0.8
4,202,356 + PFR28_03639 0.69 -0.2
4,202,356 + PFR28_03639 0.69 +0.8
4,202,356 + PFR28_03639 0.69 -1.7
4,202,357 - PFR28_03639 0.69 +0.6
4,202,357 - PFR28_03639 0.69 +0.4
4,202,357 - PFR28_03639 0.69 -0.7
4,202,357 - PFR28_03639 0.69 +1.0
4,202,357 - PFR28_03639 0.69 -0.1
4,202,357 - PFR28_03639 0.69 +1.0
4,202,417 + PFR28_03639 0.81 -0.7
4,202,417 + PFR28_03639 0.81 +1.4
4,202,417 + PFR28_03639 0.81 +0.7
4,202,417 + PFR28_03639 0.81 -0.0
4,202,418 - PFR28_03639 0.82 +0.0
4,202,418 - PFR28_03639 0.82 +0.5
4,202,509 + +0.5
4,202,509 + +0.0
4,202,510 - -0.9
4,202,510 - +0.4
4,202,510 - +0.4
4,202,510 - +0.3
4,202,532 - +1.4
4,202,532 - +1.9
4,202,560 + -0.5
4,202,560 + -1.3
4,202,560 + -0.2
4,202,560 + -0.3
4,202,560 + -1.0
4,202,560 + -1.2
4,202,561 - +1.4
4,202,561 - -1.1
4,202,561 - -1.9
4,202,561 - +0.4
4,202,561 - -0.0
4,202,561 - -0.0
4,202,573 - PFR28_03640 0.12 +0.1
4,202,582 + PFR28_03640 0.13 -1.0
4,202,582 + PFR28_03640 0.13 +0.4
4,202,582 + PFR28_03640 0.13 -0.1
4,202,582 + PFR28_03640 0.13 +1.0
4,202,583 - PFR28_03640 0.13 +0.1
4,202,583 - PFR28_03640 0.13 +1.5
4,202,583 - PFR28_03640 0.13 +0.8
4,202,583 - PFR28_03640 0.13 -0.5
4,202,584 + PFR28_03640 0.14 +1.1
4,202,584 + PFR28_03640 0.14 +1.5
4,202,584 + PFR28_03640 0.14 +0.8
4,202,585 - PFR28_03640 0.14 +0.1
4,202,585 - PFR28_03640 0.14 +0.8
4,202,585 - PFR28_03640 0.14 +0.7
4,202,585 - PFR28_03640 0.14 +1.7
4,202,585 - PFR28_03640 0.14 +1.2
4,202,585 - PFR28_03640 0.14 -0.5
4,202,851 + PFR28_03640 0.61 +1.1
4,202,852 - PFR28_03640 0.62 +1.5
4,202,878 + PFR28_03640 0.66 +2.5
4,203,010 + +0.4
4,203,010 + -0.1
4,203,011 - +0.5
4,203,011 - +0.7
4,203,044 + -0.7
4,203,121 + +0.2
4,203,158 + -0.0
4,203,168 + -1.4
4,203,169 - -0.2
4,203,175 + -0.1
4,203,175 + +0.8
4,203,176 - -0.0
4,203,176 - +0.2
4,203,176 - -0.3
4,203,177 + +0.6
4,203,177 + +0.3
4,203,177 + +0.3
4,203,178 - -0.6
4,203,178 - +1.0
4,203,195 + +0.4
4,203,201 - +0.1
4,203,279 + -0.2
4,203,279 + +0.9
4,203,279 + +0.8
4,203,280 - -0.0
4,203,280 - -0.7
4,203,280 - +1.0
4,203,361 + PFR28_03641 0.19 +0.4
4,203,361 + PFR28_03641 0.19 -2.7
4,203,361 + PFR28_03641 0.19 +1.2
4,203,361 + PFR28_03641 0.19 +0.4
4,203,361 + PFR28_03641 0.19 -0.3
4,203,361 + PFR28_03641 0.19 +0.5
4,203,361 + PFR28_03641 0.19 +0.7
4,203,361 + PFR28_03641 0.19 -0.2
4,203,362 - PFR28_03641 0.19 -0.4
4,203,362 - PFR28_03641 0.19 +1.1
4,203,362 - PFR28_03641 0.19 +0.0
4,203,362 - PFR28_03641 0.19 +0.8
4,203,362 - PFR28_03641 0.19 +0.2
4,203,362 - PFR28_03641 0.19 -1.5
4,203,362 - PFR28_03641 0.19 -0.1
4,203,362 - PFR28_03641 0.19 -1.1
4,203,362 - PFR28_03641 0.19 +0.3
4,203,362 - PFR28_03641 0.19 -0.2
4,203,362 - PFR28_03641 0.19 +0.3
4,203,362 - PFR28_03641 0.19 -0.1
4,203,362 - PFR28_03641 0.19 -1.3
4,203,362 - PFR28_03641 0.19 +0.7
4,203,428 + PFR28_03641 0.29 -0.2
4,203,428 + PFR28_03641 0.29 +0.4
4,203,504 + PFR28_03641 0.41 -0.9
4,203,504 + PFR28_03641 0.41 +0.9
4,203,504 + PFR28_03641 0.41 +0.6
4,203,577 + PFR28_03641 0.53 +0.3
4,203,577 + PFR28_03641 0.53 +1.0
4,203,577 + PFR28_03641 0.53 -0.1
4,203,577 + PFR28_03641 0.53 +0.4
4,203,577 + PFR28_03641 0.53 +0.1
4,203,577 + PFR28_03641 0.53 +0.3
4,203,578 - PFR28_03641 0.53 +0.4
4,203,578 - PFR28_03641 0.53 -1.4
4,203,767 + PFR28_03641 0.82 +0.1
4,203,775 + PFR28_03641 0.84 -0.2
4,203,775 + PFR28_03641 0.84 -0.6
4,203,775 + PFR28_03641 0.84 -1.0
4,203,775 + PFR28_03641 0.84 -0.5
4,203,776 - PFR28_03641 0.84 -0.4
4,203,776 - PFR28_03641 0.84 +0.2
4,203,776 - PFR28_03641 0.84 +0.7
4,203,776 - PFR28_03641 0.84 +0.2
4,203,776 - PFR28_03641 0.84 +0.2
4,203,776 - PFR28_03641 0.84 +0.2
4,203,776 - PFR28_03641 0.84 +0.2
4,203,776 - PFR28_03641 0.84 +0.1
4,203,776 - PFR28_03641 0.84 +0.7
4,203,776 - PFR28_03641 0.84 +0.5
4,203,776 - PFR28_03641 0.84 -0.1
4,203,776 - PFR28_03641 0.84 -0.5
4,203,814 + PFR28_03641 0.90 +0.0
4,203,814 + PFR28_03641 0.90 -0.7
4,203,814 + PFR28_03641 0.90 +0.3
4,203,814 + PFR28_03641 0.90 -0.7
4,203,814 + PFR28_03641 0.90 -0.4
4,203,814 + PFR28_03641 0.90 +0.3
4,203,814 + PFR28_03641 0.90 +0.3
4,203,814 + PFR28_03641 0.90 +0.8
4,203,815 - PFR28_03641 0.90 -0.2
4,203,815 - PFR28_03641 0.90 +0.2
4,203,815 - PFR28_03641 0.90 -0.0
4,203,815 - PFR28_03641 0.90 -0.5
4,203,815 - PFR28_03641 0.90 -0.3
4,203,815 - PFR28_03641 0.90 -1.5
4,203,815 - PFR28_03641 0.90 +0.6
4,203,815 - PFR28_03641 0.90 -1.1
4,203,815 - PFR28_03641 0.90 +0.1
4,203,815 - PFR28_03641 0.90 -0.1
4,204,010 + PFR28_03642 0.10 -0.1

Or see this region's nucleotide sequence