Strain Fitness in Pseudomonas sp. RS175 around PFR28_03309

Experiment: Adenosine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adenosine (C) 10 mM
3,816,256	+				-1.4
3,816,257	-				-0.9
3,816,398	+				-0.8
3,816,398	+				+0.3
3,816,399	-				-1.1
3,816,472	+				+1.5
3,816,472	+				-0.4
3,816,472	+				+0.9
3,816,473	-				+0.4
3,816,473	-				-1.9
3,816,473	-				+0.1
3,816,473	-				+1.4
3,816,561	+				+1.5
3,816,561	+				-0.0
3,816,561	+				+2.1
3,816,561	+				-0.0
3,816,562	-				+0.7
3,816,562	-				-0.1
3,816,562	-				+1.3
3,816,562	-				-0.4
3,816,562	-				+0.7
3,816,562	-				+1.8
3,816,562	-				-1.0
3,816,562	-				+0.0
3,816,562	-				+0.4
3,816,604	-				-0.0
3,816,632	+				-0.1
3,816,632	+				-0.0
3,816,664	+				-1.2
3,816,664	+				-0.6
3,816,700	+				+0.7
3,816,888	+				+0.8
3,816,888	+				-0.2
3,816,888	+				+1.0
3,816,888	+				+0.7
3,816,945	+				-0.6
3,816,945	+				-0.3
3,816,945	+				+0.8
3,816,945	+				-0.1
3,816,946	-				-0.5
3,816,946	-				-0.7
3,816,946	-				+1.1
3,816,946	-				+0.0
3,816,946	-				-0.3
3,816,971	+		PFR28_03308	0.20	-1.3
3,816,972	-		PFR28_03308	0.21	+0.6
3,816,972	-		PFR28_03308	0.21	+0.9
3,816,972	-		PFR28_03308	0.21	+1.5
3,816,972	-		PFR28_03308	0.21	+0.5
3,816,972	-		PFR28_03308	0.21	-2.5
3,817,138	+				+0.2
3,817,138	+				+0.7
3,817,138	+				+1.0
3,817,138	+				-0.7
3,817,138	+				+0.3
3,817,138	+				-0.9
3,817,139	-				+0.1
3,817,139	-				+0.5
3,817,139	-				+1.1
3,817,139	-				+0.6
3,817,139	-				-0.3
3,817,139	-				+0.6
3,817,139	-				+0.6
3,817,139	-				-1.0
3,817,182	+				-0.2
3,817,183	-				-0.8
3,817,183	-				+2.3
3,817,183	-				+0.4
3,817,192	-				-0.3
3,817,192	-				-1.9
3,817,195	+				+0.3
3,817,196	-				-3.1
3,817,196	-				+0.0
3,817,196	-				+1.0
3,817,395	+		PFR28_03309	0.14	-0.2
3,817,422	+		PFR28_03309	0.17	+1.1
3,817,423	-		PFR28_03309	0.17	+0.5
3,817,423	-		PFR28_03309	0.17	-0.3
3,817,501	+		PFR28_03309	0.23	+0.3
3,817,501	+		PFR28_03309	0.23	+0.4
3,817,501	+		PFR28_03309	0.23	+0.2
3,817,501	+		PFR28_03309	0.23	-0.2
3,817,501	+		PFR28_03309	0.23	+0.1
3,817,501	+		PFR28_03309	0.23	-0.9
3,817,501	+		PFR28_03309	0.23	-0.8
3,817,502	-		PFR28_03309	0.23	-0.3
3,817,502	-		PFR28_03309	0.23	-0.5
3,817,502	-		PFR28_03309	0.23	+0.0
3,817,502	-		PFR28_03309	0.23	+1.5
3,817,502	-		PFR28_03309	0.23	-0.4
3,817,502	-		PFR28_03309	0.23	+0.5
3,817,502	-		PFR28_03309	0.23	-0.4
3,817,502	-		PFR28_03309	0.23	-0.2
3,817,502	-		PFR28_03309	0.23	+0.3
3,817,600	+		PFR28_03309	0.31	-0.7
3,817,600	+		PFR28_03309	0.31	-0.1
3,817,600	+		PFR28_03309	0.31	+0.4
3,817,601	-		PFR28_03309	0.31	-0.7
3,817,601	-		PFR28_03309	0.31	-0.1
3,817,686	+		PFR28_03309	0.39	-0.7
3,817,938	+		PFR28_03309	0.59	-0.2
3,817,938	+		PFR28_03309	0.59	-1.1
3,817,938	+		PFR28_03309	0.59	+0.5
3,817,938	+		PFR28_03309	0.59	-2.2
3,817,939	-		PFR28_03309	0.60	-0.3
3,817,939	-		PFR28_03309	0.60	-0.8
3,817,941	+		PFR28_03309	0.60	+0.4
3,817,942	-		PFR28_03309	0.60	+0.4
3,818,170	+		PFR28_03309	0.79	+0.5
3,818,171	-		PFR28_03309	0.79	-2.0
3,818,171	-		PFR28_03309	0.79	+0.5
3,818,241	+		PFR28_03309	0.85	-0.4
3,818,242	-		PFR28_03309	0.85	-1.7
3,818,260	+		PFR28_03309	0.86	-0.1
3,818,261	-		PFR28_03309	0.86	-1.7
3,818,373	+				+0.4
3,818,373	+				-0.3
3,818,373	+				-0.7
3,818,373	+				-0.5
3,818,373	+				+0.1
3,818,373	+				+0.4
3,818,373	+				-1.0
3,818,373	+				+0.6
3,818,373	+				+0.6
3,818,373	+				+0.4
3,818,373	+				-0.5
3,818,373	+				-1.1
3,818,373	+				+1.0
3,818,373	+				+0.8
3,818,373	+				-0.1
3,818,373	+				+0.7
3,818,374	-				-0.3
3,818,374	-				+0.1
3,818,374	-				-1.0
3,818,374	-				+0.2
3,818,374	-				+0.3
3,818,374	-				-1.1
3,818,374	-				+0.0
3,818,374	-				-0.8
3,818,374	-				-0.6
3,818,374	-				-0.8
3,818,374	-				+0.5
3,818,374	-				-1.4
3,818,374	-				+0.5
3,818,374	-				-0.9
3,818,374	-				-0.4
3,818,374	-				-0.8
3,818,398	-				+1.3
3,818,421	+				+1.0
3,818,429	+				+1.0
3,818,430	-				+0.8
3,818,430	-				+0.2
3,818,430	-				-1.5
3,818,435	+				+0.1
3,818,435	+				+0.0
3,818,435	+				-0.3
3,818,435	+				-1.4
3,818,435	+				-0.5
3,818,435	+				-0.9
3,818,435	+				-1.0
3,818,436	-				+0.2
3,818,436	-				+0.0
3,818,436	-				+0.2
3,818,436	-				+0.2
3,818,436	-				+0.6
3,818,438	+				-0.6
3,818,438	+				-0.6
3,818,438	+				-0.9
3,818,439	-				+0.2
3,818,446	+				+0.7
3,818,446	+				-0.0
3,818,446	+				+0.2
3,818,447	-				-0.8
3,818,447	-				-1.9
3,818,447	-				+0.2
3,818,704	+		PFR28_03310	0.63	+0.7
3,818,704	+		PFR28_03310	0.63	+0.5
3,818,704	+		PFR28_03310	0.63	-0.6
3,818,704	+		PFR28_03310	0.63	+1.9
3,818,704	+		PFR28_03310	0.63	-0.0
3,818,705	-		PFR28_03310	0.63	+0.6
3,818,968	+				-1.5
3,818,969	-				+0.6
3,818,969	-				+0.6
3,818,969	-				+0.3
3,819,019	+				-0.1
3,819,019	+				+0.2
3,819,019	+				-0.3
3,819,019	+				-0.1
3,819,019	+				-0.6
3,819,019	+				+1.3
3,819,020	-				+0.3
3,819,020	-				-0.2
3,819,020	-				+1.5
3,819,020	-				+0.1
3,819,076	+				+0.5
3,819,076	+				-0.5
3,819,077	-				+0.1
3,819,077	-				-0.1
3,819,115	+				-0.2
3,819,116	-				+0.4
3,819,187	+		PFR28_03311	0.12	-0.6
3,819,187	+		PFR28_03311	0.12	-0.4
3,819,187	+		PFR28_03311	0.12	-0.1
3,819,187	+		PFR28_03311	0.12	+0.3
3,819,187	+		PFR28_03311	0.12	+1.5
3,819,187	+		PFR28_03311	0.12	+1.0
3,819,187	+		PFR28_03311	0.12	+0.5
3,819,187	+		PFR28_03311	0.12	-0.2
3,819,187	+		PFR28_03311	0.12	-0.2
3,819,187	+		PFR28_03311	0.12	+0.7
3,819,187	+		PFR28_03311	0.12	+0.0
3,819,187	+		PFR28_03311	0.12	-0.3
3,819,187	+		PFR28_03311	0.12	-0.5
3,819,188	-		PFR28_03311	0.12	-1.3
3,819,188	-		PFR28_03311	0.12	-0.2
3,819,188	-		PFR28_03311	0.12	+0.5
3,819,188	-		PFR28_03311	0.12	-0.1
3,819,188	-		PFR28_03311	0.12	+0.3
3,819,188	-		PFR28_03311	0.12	+0.1
3,819,188	-		PFR28_03311	0.12	-0.2
3,819,188	-		PFR28_03311	0.12	+0.3
3,819,188	-		PFR28_03311	0.12	-0.6
3,819,188	-		PFR28_03311	0.12	-0.2
3,819,188	-		PFR28_03311	0.12	+0.1
3,819,188	-		PFR28_03311	0.12	-0.3
3,819,196	+		PFR28_03311	0.13	+0.2
3,819,271	+		PFR28_03311	0.18	-0.2
3,819,271	+		PFR28_03311	0.18	-0.3
3,819,271	+		PFR28_03311	0.18	+1.1
3,819,271	+		PFR28_03311	0.18	-1.0
3,819,352	+		PFR28_03311	0.24	+0.4
3,819,353	-		PFR28_03311	0.24	+0.4