Experiment: Adenosine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02619 and PFR28_02620 overlap by 4 nucleotides PFR28_02620 and PFR28_02621 are separated by 124 nucleotides PFR28_02621 and PFR28_02622 are separated by 83 nucleotides
PFR28_02619: PFR28_02619 - tRNA-specific 2-thiouridylase MnmA, at 3,096,002 to 3,097,126
_02619
PFR28_02620: PFR28_02620 - High frequency lysogenization protein HflD, at 3,097,123 to 3,097,746
_02620
PFR28_02621: PFR28_02621 - Adenylosuccinate lyase, at 3,097,871 to 3,099,241
_02621
PFR28_02622: PFR28_02622 - 50S ribosomal protein L16 3-hydroxylase, at 3,099,325 to 3,100,491
_02622
Position (kb)
3097
3098
3099
3100 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3097.115 kb on - strand at 3097.283 kb on - strand, within PFR28_02620 at 3097.378 kb on + strand, within PFR28_02620 at 3097.379 kb on - strand, within PFR28_02620 at 3097.394 kb on + strand, within PFR28_02620 at 3097.395 kb on - strand, within PFR28_02620 at 3097.395 kb on - strand, within PFR28_02620 at 3097.529 kb on - strand, within PFR28_02620 at 3097.529 kb on - strand, within PFR28_02620 at 3097.545 kb on + strand, within PFR28_02620 at 3097.545 kb on + strand, within PFR28_02620 at 3097.713 kb on + strand at 3097.713 kb on + strand at 3097.744 kb on + strand at 3097.744 kb on + strand at 3097.744 kb on + strand at 3097.744 kb on + strand at 3097.745 kb on - strand at 3097.745 kb on - strand at 3097.768 kb on - strand at 3097.768 kb on - strand at 3097.768 kb on - strand at 3097.825 kb on + strand at 3099.235 kb on + strand at 3099.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM remove 3,097,115 - -0.2 3,097,283 - PFR28_02620 0.26 +0.8 3,097,378 + PFR28_02620 0.41 -0.5 3,097,379 - PFR28_02620 0.41 -0.3 3,097,394 + PFR28_02620 0.43 -0.3 3,097,395 - PFR28_02620 0.44 +0.3 3,097,395 - PFR28_02620 0.44 -2.1 3,097,529 - PFR28_02620 0.65 -0.7 3,097,529 - PFR28_02620 0.65 -1.5 3,097,545 + PFR28_02620 0.68 +0.2 3,097,545 + PFR28_02620 0.68 -1.0 3,097,713 + +0.7 3,097,713 + -0.1 3,097,744 + +2.0 3,097,744 + +1.5 3,097,744 + +0.2 3,097,744 + -0.4 3,097,745 - +0.9 3,097,745 - +0.2 3,097,768 - -0.7 3,097,768 - -0.2 3,097,768 - -1.5 3,097,825 + -0.5 3,099,235 + +0.8 3,099,235 + -1.2
Or see this region's nucleotide sequence