Strain Fitness in Pseudomonas sp. RS175 around PFR28_02621

Experiment: Adenosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02619 and PFR28_02620 overlap by 4 nucleotidesPFR28_02620 and PFR28_02621 are separated by 124 nucleotidesPFR28_02621 and PFR28_02622 are separated by 83 nucleotides PFR28_02619: PFR28_02619 - tRNA-specific 2-thiouridylase MnmA, at 3,096,002 to 3,097,126 _02619 PFR28_02620: PFR28_02620 - High frequency lysogenization protein HflD, at 3,097,123 to 3,097,746 _02620 PFR28_02621: PFR28_02621 - Adenylosuccinate lyase, at 3,097,871 to 3,099,241 _02621 PFR28_02622: PFR28_02622 - 50S ribosomal protein L16 3-hydroxylase, at 3,099,325 to 3,100,491 _02622 Position (kb) 3097 3098 3099 3100Strain fitness (log2 ratio) -2 -1 0 1 2at 3097.115 kb on - strandat 3097.283 kb on - strand, within PFR28_02620at 3097.378 kb on + strand, within PFR28_02620at 3097.379 kb on - strand, within PFR28_02620at 3097.394 kb on + strand, within PFR28_02620at 3097.395 kb on - strand, within PFR28_02620at 3097.395 kb on - strand, within PFR28_02620at 3097.529 kb on - strand, within PFR28_02620at 3097.529 kb on - strand, within PFR28_02620at 3097.545 kb on + strand, within PFR28_02620at 3097.545 kb on + strand, within PFR28_02620at 3097.713 kb on + strandat 3097.713 kb on + strandat 3097.744 kb on + strandat 3097.744 kb on + strandat 3097.744 kb on + strandat 3097.744 kb on + strandat 3097.745 kb on - strandat 3097.745 kb on - strandat 3097.768 kb on - strandat 3097.768 kb on - strandat 3097.768 kb on - strandat 3097.825 kb on + strandat 3099.235 kb on + strandat 3099.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM
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3,097,115 - -0.2
3,097,283 - PFR28_02620 0.26 +0.8
3,097,378 + PFR28_02620 0.41 -0.5
3,097,379 - PFR28_02620 0.41 -0.3
3,097,394 + PFR28_02620 0.43 -0.3
3,097,395 - PFR28_02620 0.44 +0.3
3,097,395 - PFR28_02620 0.44 -2.1
3,097,529 - PFR28_02620 0.65 -0.7
3,097,529 - PFR28_02620 0.65 -1.5
3,097,545 + PFR28_02620 0.68 +0.2
3,097,545 + PFR28_02620 0.68 -1.0
3,097,713 + +0.7
3,097,713 + -0.1
3,097,744 + +2.0
3,097,744 + +1.5
3,097,744 + +0.2
3,097,744 + -0.4
3,097,745 - +0.9
3,097,745 - +0.2
3,097,768 - -0.7
3,097,768 - -0.2
3,097,768 - -1.5
3,097,825 + -0.5
3,099,235 + +0.8
3,099,235 + -1.2

Or see this region's nucleotide sequence