Strain Fitness in Pseudomonas sp. RS175 around PFR28_01154

Experiment: Adenosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01152 and PFR28_01153 are separated by 6 nucleotidesPFR28_01153 and PFR28_01154 are separated by 75 nucleotidesPFR28_01154 and PFR28_01155 overlap by 4 nucleotidesPFR28_01155 and PFR28_01156 overlap by 4 nucleotidesPFR28_01156 and PFR28_01157 are separated by 40 nucleotides PFR28_01152: PFR28_01152 - hypothetical protein, at 1,269,789 to 1,272,518 _01152 PFR28_01153: PFR28_01153 - hypothetical protein, at 1,272,525 to 1,272,758 _01153 PFR28_01154: PFR28_01154 - hypothetical protein, at 1,272,834 to 1,273,205 _01154 PFR28_01155: PFR28_01155 - hypothetical protein, at 1,273,202 to 1,273,492 _01155 PFR28_01156: PFR28_01156 - hypothetical protein, at 1,273,489 to 1,273,962 _01156 PFR28_01157: PFR28_01157 - hypothetical protein, at 1,274,003 to 1,274,251 _01157 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2at 1272.016 kb on + strand, within PFR28_01152at 1272.016 kb on + strand, within PFR28_01152at 1272.016 kb on + strand, within PFR28_01152at 1272.016 kb on + strand, within PFR28_01152at 1272.163 kb on + strand, within PFR28_01152at 1272.226 kb on + strand, within PFR28_01152at 1272.226 kb on + strand, within PFR28_01152at 1272.226 kb on + strand, within PFR28_01152at 1272.260 kb on + strandat 1272.260 kb on + strandat 1272.260 kb on + strandat 1272.261 kb on - strandat 1272.261 kb on - strandat 1272.261 kb on - strandat 1272.261 kb on - strandat 1272.291 kb on + strandat 1272.291 kb on + strandat 1272.291 kb on + strandat 1272.291 kb on + strandat 1272.291 kb on + strandat 1272.291 kb on + strandat 1272.292 kb on - strandat 1272.292 kb on - strandat 1272.292 kb on - strandat 1272.292 kb on - strandat 1272.292 kb on - strandat 1272.301 kb on + strandat 1272.312 kb on + strandat 1272.312 kb on + strandat 1272.313 kb on - strandat 1272.313 kb on - strandat 1272.382 kb on + strandat 1272.382 kb on + strandat 1272.382 kb on + strandat 1272.383 kb on - strandat 1272.383 kb on - strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.433 kb on + strandat 1272.434 kb on - strandat 1272.434 kb on - strandat 1272.434 kb on - strandat 1272.463 kb on + strandat 1272.526 kb on + strandat 1272.526 kb on + strandat 1272.526 kb on + strandat 1272.526 kb on + strandat 1272.527 kb on - strandat 1272.618 kb on + strand, within PFR28_01153at 1272.679 kb on + strand, within PFR28_01153at 1272.824 kb on + strandat 1272.888 kb on + strand, within PFR28_01154at 1273.056 kb on + strand, within PFR28_01154at 1273.057 kb on - strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.077 kb on - strand, within PFR28_01154at 1273.096 kb on + strand, within PFR28_01154at 1273.096 kb on + strand, within PFR28_01154at 1273.096 kb on + strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.298 kb on + strand, within PFR28_01155at 1273.401 kb on + strand, within PFR28_01155at 1273.401 kb on + strand, within PFR28_01155at 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.556 kb on + strand, within PFR28_01156at 1273.557 kb on - strand, within PFR28_01156at 1273.604 kb on - strand, within PFR28_01156at 1273.604 kb on - strand, within PFR28_01156at 1273.604 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.667 kb on - strand, within PFR28_01156at 1273.667 kb on - strand, within PFR28_01156at 1273.667 kb on - strand, within PFR28_01156at 1273.679 kb on + strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.751 kb on + strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.835 kb on + strand, within PFR28_01156at 1273.945 kb on + strandat 1273.946 kb on - strandat 1273.946 kb on - strandat 1273.946 kb on - strandat 1273.948 kb on + strandat 1273.949 kb on - strandat 1273.949 kb on - strandat 1273.993 kb on + strandat 1274.069 kb on + strand, within PFR28_01157at 1274.150 kb on + strand, within PFR28_01157at 1274.150 kb on + strand, within PFR28_01157

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM
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1,272,016 + PFR28_01152 0.82 -0.0
1,272,016 + PFR28_01152 0.82 +1.0
1,272,016 + PFR28_01152 0.82 +1.4
1,272,016 + PFR28_01152 0.82 +0.6
1,272,163 + PFR28_01152 0.87 -0.1
1,272,226 + PFR28_01152 0.89 -0.9
1,272,226 + PFR28_01152 0.89 -0.4
1,272,226 + PFR28_01152 0.89 -0.3
1,272,260 + +0.0
1,272,260 + +1.5
1,272,260 + -1.4
1,272,261 - -0.4
1,272,261 - +1.1
1,272,261 - -0.6
1,272,261 - -0.4
1,272,291 + -0.3
1,272,291 + +0.2
1,272,291 + +0.6
1,272,291 + -0.1
1,272,291 + +0.6
1,272,291 + +0.9
1,272,292 - +1.2
1,272,292 - -0.2
1,272,292 - -1.1
1,272,292 - +1.1
1,272,292 - -0.9
1,272,301 + +0.8
1,272,312 + +1.6
1,272,312 + -1.0
1,272,313 - -1.8
1,272,313 - +0.2
1,272,382 + +0.6
1,272,382 + -1.9
1,272,382 + -0.7
1,272,383 - -1.7
1,272,383 - +0.5
1,272,433 + +1.0
1,272,433 + -0.4
1,272,433 + +0.7
1,272,433 + +0.5
1,272,433 + -1.2
1,272,433 + -0.4
1,272,433 + +0.6
1,272,433 + -0.3
1,272,434 - -0.2
1,272,434 - +1.0
1,272,434 - +1.3
1,272,463 + +0.2
1,272,526 + -1.0
1,272,526 + +0.3
1,272,526 + +0.5
1,272,526 + +0.5
1,272,527 - +0.2
1,272,618 + PFR28_01153 0.40 -0.6
1,272,679 + PFR28_01153 0.66 +0.1
1,272,824 + -0.3
1,272,888 + PFR28_01154 0.15 +0.4
1,273,056 + PFR28_01154 0.60 +2.0
1,273,057 - PFR28_01154 0.60 -6.4
1,273,076 + PFR28_01154 0.65 -1.1
1,273,076 + PFR28_01154 0.65 -1.9
1,273,076 + PFR28_01154 0.65 -0.3
1,273,076 + PFR28_01154 0.65 -0.3
1,273,076 + PFR28_01154 0.65 -0.1
1,273,077 - PFR28_01154 0.65 -3.0
1,273,096 + PFR28_01154 0.70 +0.3
1,273,096 + PFR28_01154 0.70 -0.5
1,273,096 + PFR28_01154 0.70 -0.6
1,273,097 - PFR28_01154 0.71 -5.0
1,273,097 - PFR28_01154 0.71 -3.7
1,273,097 - PFR28_01154 0.71 -2.6
1,273,097 - PFR28_01154 0.71 -6.4
1,273,298 + PFR28_01155 0.33 -0.8
1,273,401 + PFR28_01155 0.68 -0.7
1,273,401 + PFR28_01155 0.68 +1.5
1,273,482 + +0.9
1,273,482 + -0.2
1,273,482 + +0.0
1,273,482 + -0.8
1,273,482 + -0.5
1,273,482 + -0.4
1,273,482 + +0.5
1,273,483 - -6.5
1,273,483 - -7.3
1,273,483 - -5.8
1,273,483 - -2.1
1,273,483 - -3.2
1,273,483 - -9.0
1,273,483 - -5.2
1,273,483 - -6.7
1,273,556 + PFR28_01156 0.14 +0.6
1,273,557 - PFR28_01156 0.14 -2.4
1,273,604 - PFR28_01156 0.24 -3.9
1,273,604 - PFR28_01156 0.24 -4.4
1,273,604 - PFR28_01156 0.24 -3.0
1,273,644 - PFR28_01156 0.33 -5.1
1,273,644 - PFR28_01156 0.33 -1.5
1,273,644 - PFR28_01156 0.33 -2.4
1,273,644 - PFR28_01156 0.33 -3.8
1,273,666 + PFR28_01156 0.37 -0.2
1,273,666 + PFR28_01156 0.37 -0.6
1,273,666 + PFR28_01156 0.37 +0.5
1,273,666 + PFR28_01156 0.37 -0.6
1,273,666 + PFR28_01156 0.37 -0.4
1,273,666 + PFR28_01156 0.37 -0.6
1,273,667 - PFR28_01156 0.38 -5.6
1,273,667 - PFR28_01156 0.38 -2.8
1,273,667 - PFR28_01156 0.38 -1.6
1,273,679 + PFR28_01156 0.40 +0.4
1,273,680 - PFR28_01156 0.40 -2.8
1,273,680 - PFR28_01156 0.40 -5.6
1,273,680 - PFR28_01156 0.40 -4.3
1,273,680 - PFR28_01156 0.40 -1.3
1,273,736 + PFR28_01156 0.52 -0.2
1,273,736 + PFR28_01156 0.52 +1.0
1,273,736 + PFR28_01156 0.52 +0.5
1,273,736 + PFR28_01156 0.52 +0.7
1,273,736 + PFR28_01156 0.52 +0.9
1,273,736 + PFR28_01156 0.52 +0.5
1,273,736 + PFR28_01156 0.52 -0.6
1,273,736 + PFR28_01156 0.52 +0.8
1,273,736 + PFR28_01156 0.52 +0.8
1,273,737 - PFR28_01156 0.52 -2.9
1,273,737 - PFR28_01156 0.52 -5.8
1,273,737 - PFR28_01156 0.52 -2.2
1,273,737 - PFR28_01156 0.52 -4.1
1,273,737 - PFR28_01156 0.52 -4.6
1,273,737 - PFR28_01156 0.52 -3.2
1,273,737 - PFR28_01156 0.52 -2.0
1,273,737 - PFR28_01156 0.52 -4.3
1,273,737 - PFR28_01156 0.52 -2.2
1,273,737 - PFR28_01156 0.52 -4.3
1,273,737 - PFR28_01156 0.52 -4.3
1,273,737 - PFR28_01156 0.52 -1.5
1,273,751 + PFR28_01156 0.55 -0.5
1,273,752 - PFR28_01156 0.55 -3.0
1,273,752 - PFR28_01156 0.55 -2.7
1,273,752 - PFR28_01156 0.55 -3.3
1,273,752 - PFR28_01156 0.55 -3.8
1,273,835 + PFR28_01156 0.73 -1.2
1,273,945 + -0.8
1,273,946 - -2.8
1,273,946 - +1.4
1,273,946 - -0.8
1,273,948 + +0.4
1,273,949 - -1.5
1,273,949 - -0.8
1,273,993 + +1.8
1,274,069 + PFR28_01157 0.27 -0.6
1,274,150 + PFR28_01157 0.59 -1.1
1,274,150 + PFR28_01157 0.59 -0.8

Or see this region's nucleotide sequence