Strain Fitness in Pseudomonas sp. RS175 around PFR28_01064

Experiment: Adenosine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adenosine (C) 10 mM
1,170,579	+		PFR28_01063	0.59	-0.8
1,170,579	+		PFR28_01063	0.59	-2.7
1,170,671	+		PFR28_01063	0.63	+0.6
1,170,680	+		PFR28_01063	0.63	-0.1
1,170,680	+		PFR28_01063	0.63	-0.3
1,170,680	+		PFR28_01063	0.63	-1.8
1,170,680	+		PFR28_01063	0.63	-0.2
1,170,680	+		PFR28_01063	0.63	-0.6
1,170,680	+		PFR28_01063	0.63	-3.4
1,170,680	+		PFR28_01063	0.63	-2.3
1,170,681	-		PFR28_01063	0.63	-0.2
1,170,681	-		PFR28_01063	0.63	-1.3
1,170,977	+		PFR28_01063	0.75	-1.0
1,170,978	-		PFR28_01063	0.75	-0.9
1,171,139	+		PFR28_01063	0.82	-0.7
1,171,139	+		PFR28_01063	0.82	-3.1
1,171,140	-		PFR28_01063	0.82	-1.7
1,171,288	+		PFR28_01063	0.88	-1.8
1,171,288	+		PFR28_01063	0.88	-1.8
1,171,288	+		PFR28_01063	0.88	-0.4
1,171,288	+		PFR28_01063	0.88	-3.0
1,171,291	-		PFR28_01063	0.89	-2.0
1,171,291	-		PFR28_01063	0.89	-0.8
1,171,291	-		PFR28_01063	0.89	-1.3
1,171,291	-		PFR28_01063	0.89	-0.3
1,171,302	+		PFR28_01063	0.89	-2.8
1,171,331	+				+1.6
1,171,332	-				-1.6
1,171,391	+				-0.8
1,171,391	+				-1.0
1,171,392	-				-1.7
1,171,392	-				-1.3
1,171,392	-				+1.6
1,171,392	-				-1.0
1,171,392	-				-1.7
1,171,433	+				-2.2
1,171,433	+				-1.4
1,171,433	+				-2.9
1,171,434	-				-2.3
1,171,434	-				-2.3
1,171,434	-				-0.4
1,171,434	-				-1.9
1,171,497	+				-2.4
1,171,560	+				-0.1
1,171,561	-				-2.6
1,171,566	+				-1.6
1,171,566	+				-1.3
1,171,566	+				-1.3
1,171,566	+				-0.9
1,171,566	+				-2.1
1,171,566	+				-0.2
1,171,566	+				-2.6
1,171,567	-				-0.4
1,171,567	-				+0.6
1,171,567	-				-2.4
1,171,567	-				-1.4
1,171,567	-				-1.4
1,171,567	-				-2.5
1,171,567	-				-0.8
1,171,567	-				-2.3
1,171,614	+				+0.7
1,171,614	+				-3.0
1,171,614	+				-1.2
1,171,650	+				-2.4
1,171,899	+		PFR28_01064	0.23	-2.1
1,171,899	+		PFR28_01064	0.23	-2.7
1,171,899	+		PFR28_01064	0.23	-1.6
1,171,900	-		PFR28_01064	0.23	-1.8
1,171,900	-		PFR28_01064	0.23	-2.3
1,171,995	+		PFR28_01064	0.30	-1.8
1,171,995	+		PFR28_01064	0.30	-3.6
1,171,995	+		PFR28_01064	0.30	-0.5
1,171,995	+		PFR28_01064	0.30	-0.9
1,171,995	+		PFR28_01064	0.30	+1.6
1,171,996	-		PFR28_01064	0.30	-1.0
1,171,996	-		PFR28_01064	0.30	-1.9
1,171,996	-		PFR28_01064	0.30	-1.1
1,172,039	+		PFR28_01064	0.33	-1.1
1,172,040	-		PFR28_01064	0.33	-0.8
1,172,199	+		PFR28_01064	0.44	-3.3
1,172,200	-		PFR28_01064	0.44	+0.8
1,172,200	-		PFR28_01064	0.44	-1.9
1,172,200	-		PFR28_01064	0.44	-1.3
1,172,286	+		PFR28_01064	0.50	-2.3
1,172,286	+		PFR28_01064	0.50	-2.4
1,172,286	+		PFR28_01064	0.50	-1.5
1,172,286	+		PFR28_01064	0.50	-1.6
1,172,286	+		PFR28_01064	0.50	-1.4
1,172,286	+		PFR28_01064	0.50	-0.8
1,172,286	+		PFR28_01064	0.50	-3.1
1,172,286	+		PFR28_01064	0.50	-3.2
1,172,286	+		PFR28_01064	0.50	+0.8
1,172,286	+		PFR28_01064	0.50	-1.4
1,172,286	+		PFR28_01064	0.50	-1.1
1,172,286	+		PFR28_01064	0.50	-1.7
1,172,287	-		PFR28_01064	0.50	-0.6
1,172,287	-		PFR28_01064	0.50	-2.8
1,172,287	-		PFR28_01064	0.50	-1.4
1,172,287	-		PFR28_01064	0.50	-2.8
1,172,287	-		PFR28_01064	0.50	-1.4
1,172,287	-		PFR28_01064	0.50	-3.4
1,172,287	-		PFR28_01064	0.50	+0.4
1,172,287	-		PFR28_01064	0.50	-1.9
1,172,287	-		PFR28_01064	0.50	-1.3
1,172,287	-		PFR28_01064	0.50	-2.1
1,172,287	-		PFR28_01064	0.50	-2.5
1,172,287	-		PFR28_01064	0.50	-2.4
1,172,370	+		PFR28_01064	0.56	-2.6
1,172,371	-		PFR28_01064	0.56	-2.9
1,172,379	+		PFR28_01064	0.56	+0.2
1,172,846	+		PFR28_01064	0.88	-2.6
1,172,846	+		PFR28_01064	0.88	-1.0
1,172,846	+		PFR28_01064	0.88	-3.4
1,172,846	+		PFR28_01064	0.88	-0.8
1,172,846	+		PFR28_01064	0.88	-0.3
1,172,847	-		PFR28_01064	0.89	-0.5
1,172,940	+				-1.4
1,172,941	-				-0.2
1,172,941	-				-1.5
1,172,999	+				-0.2
1,173,034	+				-0.7
1,173,035	-				+1.3
1,173,035	-				+0.2
1,173,035	-				-0.2
1,173,042	+				-3.1
1,173,043	-				-1.4
1,173,061	+				+0.2
1,173,179	-				-0.8
1,173,305	+				-0.0
1,173,305	+				-1.0
1,173,305	+				-1.0
1,173,305	+				+0.9
1,173,305	+				+0.1
1,173,305	+				+0.3
1,173,305	+				+0.4
1,173,306	-				+0.0
1,173,306	-				-0.3
1,173,306	-				-0.1
1,173,307	+				+1.1
1,173,307	+				+1.6
1,173,307	+				+0.6
1,173,307	+				+0.4
1,173,307	+				-1.6
1,173,308	-				+0.6
1,173,308	-				+0.9
1,173,308	-				-1.3
1,173,308	-				-0.4
1,173,308	-				+1.6
1,173,308	-				+1.4
1,173,347	+				-1.0
1,173,359	+				-2.2
1,173,359	+				+0.2
1,173,360	-				+0.6
1,173,360	-				-0.1
1,173,360	-				+0.2
1,173,360	-				+0.2
1,173,639	-		PFR28_01065	0.36	+1.6
1,173,639	-		PFR28_01065	0.36	-0.1
1,173,639	-		PFR28_01065	0.36	-0.0
1,173,670	+		PFR28_01065	0.40	+0.1
1,173,670	+		PFR28_01065	0.40	+0.6
1,173,670	+		PFR28_01065	0.40	+0.9
1,173,670	+		PFR28_01065	0.40	+0.2
1,173,670	+		PFR28_01065	0.40	+0.1
1,173,670	+		PFR28_01065	0.40	-0.4
1,173,670	+		PFR28_01065	0.40	-0.1
1,173,670	+		PFR28_01065	0.40	-0.1
1,173,670	+		PFR28_01065	0.40	-2.1
1,173,671	-		PFR28_01065	0.41	+0.3
1,173,671	-		PFR28_01065	0.41	+1.8
1,173,671	-		PFR28_01065	0.41	+0.8
1,173,671	-		PFR28_01065	0.41	-0.4
1,173,671	-		PFR28_01065	0.41	-1.3
1,173,671	-		PFR28_01065	0.41	+0.1
1,173,671	-		PFR28_01065	0.41	+0.4
1,173,671	-		PFR28_01065	0.41	-0.8
1,173,671	-		PFR28_01065	0.41	-2.1
1,173,671	-		PFR28_01065	0.41	+0.0
1,173,784	-		PFR28_01065	0.58	+0.6
1,173,784	-		PFR28_01065	0.58	+0.1
1,173,845	-		PFR28_01065	0.67	-0.3
1,173,845	-		PFR28_01065	0.67	-0.4
1,173,892	+		PFR28_01065	0.74	-2.4
1,173,893	-		PFR28_01065	0.74	+0.9
1,173,893	-		PFR28_01065	0.74	-0.0
1,173,893	-		PFR28_01065	0.74	+0.4
1,174,012	+				+0.6
1,174,012	+				-0.7
1,174,012	+				-0.7
1,174,012	+				-0.2
1,174,013	-				+0.0
1,174,013	-				-0.4
1,174,013	-				-0.4