Strain Fitness in Pseudomonas sp. RS175 around PFR28_01063

Experiment: Adenosine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adenosine (C) 10 mM
1,168,175	-				-0.1
1,168,291	+				-3.4
1,168,291	+				-2.4
1,168,291	+				-1.4
1,168,291	+				-2.5
1,168,291	+				-3.1
1,168,291	+				-3.1
1,168,291	+				-0.3
1,168,291	+				-3.0
1,168,291	+				-1.4
1,168,291	+				-0.9
1,168,292	-				-4.4
1,168,292	-				+0.0
1,168,292	-				-2.3
1,168,292	-				-1.3
1,168,292	-				-0.6
1,168,292	-				-3.3
1,168,292	-				-2.1
1,168,292	-				-1.9
1,168,546	+		PFR28_01062	0.40	-0.8
1,168,546	+		PFR28_01062	0.40	-1.4
1,168,546	+		PFR28_01062	0.40	-1.6
1,168,546	+		PFR28_01062	0.40	-1.3
1,168,546	+		PFR28_01062	0.40	-0.9
1,168,546	+		PFR28_01062	0.40	-1.6
1,168,546	+		PFR28_01062	0.40	-3.4
1,168,546	+		PFR28_01062	0.40	-0.9
1,168,547	-		PFR28_01062	0.40	-0.6
1,168,547	-		PFR28_01062	0.40	-0.8
1,168,547	-		PFR28_01062	0.40	-1.5
1,168,547	-		PFR28_01062	0.40	-3.3
1,168,547	-		PFR28_01062	0.40	-1.5
1,168,879	+		PFR28_01062	0.80	-0.9
1,168,879	+		PFR28_01062	0.80	-0.8
1,168,879	+		PFR28_01062	0.80	-0.4
1,168,879	+		PFR28_01062	0.80	-1.6
1,168,879	+		PFR28_01062	0.80	-2.3
1,168,879	+		PFR28_01062	0.80	-1.8
1,168,879	+		PFR28_01062	0.80	-1.6
1,168,879	+		PFR28_01062	0.80	-1.6
1,168,880	-		PFR28_01062	0.80	-0.8
1,168,880	-		PFR28_01062	0.80	-0.2
1,168,880	-		PFR28_01062	0.80	-0.3
1,169,041	+				-2.2
1,169,041	+				-0.8
1,169,041	+				-0.5
1,169,041	+				-1.9
1,169,041	+				-1.0
1,169,041	+				-1.9
1,169,041	+				-0.9
1,169,041	+				-1.4
1,169,041	+				-1.6
1,169,042	-				-1.1
1,169,042	-				-0.4
1,169,042	-				-0.8
1,169,042	-				+1.1
1,169,042	-				-2.0
1,169,042	-				-0.3
1,169,042	-				-0.6
1,169,042	-				-2.5
1,169,042	-				-0.7
1,169,042	-				-0.6
1,169,042	-				-2.1
1,169,042	-				-1.6
1,169,042	-				-0.3
1,169,042	-				-0.7
1,169,045	+				-0.6
1,169,045	+				-1.4
1,169,045	+				-1.2
1,169,045	+				-1.1
1,169,045	+				-0.3
1,169,045	+				-4.7
1,169,045	+				-3.7
1,169,045	+				+0.4
1,169,046	-				-0.5
1,169,046	-				-2.0
1,169,046	-				-1.6
1,169,046	-				-0.8
1,169,046	-				-2.4
1,169,046	-				+0.1
1,169,046	-				+1.4
1,169,046	-				-3.6
1,169,046	-				-0.4
1,169,046	-				-0.1
1,169,046	-				-0.4
1,169,046	-				-1.5
1,169,046	-				-2.1
1,169,046	-				-0.8
1,169,046	-				-0.8
1,169,046	-				-0.1
1,169,046	-				-1.0
1,169,168	+				-0.4
1,169,169	-				-1.4
1,169,169	-				+0.1
1,169,169	-				+0.9
1,169,169	-				-0.8
1,169,465	+		PFR28_01063	0.12	-0.6
1,169,465	+		PFR28_01063	0.12	-2.3
1,169,633	+		PFR28_01063	0.19	-0.7
1,169,633	+		PFR28_01063	0.19	-2.4
1,169,633	+		PFR28_01063	0.19	-1.9
1,169,681	+		PFR28_01063	0.21	-1.9
1,169,681	+		PFR28_01063	0.21	-1.1
1,169,681	+		PFR28_01063	0.21	-1.4
1,169,682	-		PFR28_01063	0.21	-0.4
1,169,687	+		PFR28_01063	0.22	-1.5
1,169,687	+		PFR28_01063	0.22	-0.8
1,169,687	+		PFR28_01063	0.22	+0.6
1,169,687	+		PFR28_01063	0.22	-0.1
1,169,687	+		PFR28_01063	0.22	-1.2
1,169,687	+		PFR28_01063	0.22	-1.6
1,169,687	+		PFR28_01063	0.22	+0.3
1,169,687	+		PFR28_01063	0.22	+0.1
1,169,687	+		PFR28_01063	0.22	-0.6
1,169,688	-		PFR28_01063	0.22	-1.6
1,169,688	-		PFR28_01063	0.22	-1.7
1,169,688	-		PFR28_01063	0.22	+0.7
1,169,688	-		PFR28_01063	0.22	-1.1
1,169,688	-		PFR28_01063	0.22	-3.5
1,169,688	-		PFR28_01063	0.22	-2.4
1,169,688	-		PFR28_01063	0.22	-2.2
1,169,688	-		PFR28_01063	0.22	-2.7
1,169,688	-		PFR28_01063	0.22	+0.6
1,169,688	-		PFR28_01063	0.22	-1.0
1,169,688	-		PFR28_01063	0.22	-1.1
1,169,688	-		PFR28_01063	0.22	-1.7
1,169,690	+		PFR28_01063	0.22	-1.7
1,169,690	+		PFR28_01063	0.22	-1.7
1,169,690	+		PFR28_01063	0.22	-0.4
1,169,690	+		PFR28_01063	0.22	-2.2
1,169,691	-		PFR28_01063	0.22	-4.8
1,169,691	-		PFR28_01063	0.22	-1.1
1,169,691	-		PFR28_01063	0.22	+1.9
1,169,691	-		PFR28_01063	0.22	-3.1
1,169,693	+		PFR28_01063	0.22	-1.9
1,169,693	+		PFR28_01063	0.22	+0.2
1,169,693	+		PFR28_01063	0.22	-1.6
1,169,693	+		PFR28_01063	0.22	-0.9
1,169,694	-		PFR28_01063	0.22	-2.4
1,169,694	-		PFR28_01063	0.22	-1.0
1,169,694	-		PFR28_01063	0.22	-0.5
1,169,726	+		PFR28_01063	0.23	-0.8
1,169,726	+		PFR28_01063	0.23	-1.8
1,169,726	+		PFR28_01063	0.23	-1.4
1,169,726	+		PFR28_01063	0.23	-2.0
1,169,726	+		PFR28_01063	0.23	-1.4
1,169,726	+		PFR28_01063	0.23	-1.7
1,169,727	-		PFR28_01063	0.23	-0.8
1,169,727	-		PFR28_01063	0.23	-0.2
1,169,727	-		PFR28_01063	0.23	-2.4
1,169,729	+		PFR28_01063	0.23	-1.0
1,169,729	+		PFR28_01063	0.23	-2.1
1,169,729	+		PFR28_01063	0.23	-3.8
1,169,729	+		PFR28_01063	0.23	-2.5
1,169,729	+		PFR28_01063	0.23	-1.1
1,169,729	+		PFR28_01063	0.23	-2.6
1,169,729	+		PFR28_01063	0.23	-4.3
1,169,730	-		PFR28_01063	0.23	-1.2
1,169,730	-		PFR28_01063	0.23	-2.1
1,169,747	+		PFR28_01063	0.24	-0.4
1,169,747	+		PFR28_01063	0.24	-0.9
1,169,748	-		PFR28_01063	0.24	-0.8
1,169,748	-		PFR28_01063	0.24	-1.4
1,169,748	-		PFR28_01063	0.24	-1.6
1,169,783	+		PFR28_01063	0.26	-3.1
1,169,876	+		PFR28_01063	0.30	+0.3
1,169,876	+		PFR28_01063	0.30	-1.3
1,169,876	+		PFR28_01063	0.30	-2.4
1,169,876	+		PFR28_01063	0.30	-1.4
1,169,876	+		PFR28_01063	0.30	-1.4
1,169,877	-		PFR28_01063	0.30	-1.8
1,169,877	-		PFR28_01063	0.30	-2.9
1,169,877	-		PFR28_01063	0.30	-1.8
1,169,877	-		PFR28_01063	0.30	-0.7
1,170,108	+		PFR28_01063	0.39	-1.3
1,170,108	+		PFR28_01063	0.39	-1.3
1,170,108	+		PFR28_01063	0.39	-1.9
1,170,109	-		PFR28_01063	0.39	-0.7
1,170,109	-		PFR28_01063	0.39	-3.0
1,170,109	-		PFR28_01063	0.39	-3.8
1,170,131	+		PFR28_01063	0.40	-0.7
1,170,131	+		PFR28_01063	0.40	-0.9
1,170,132	-		PFR28_01063	0.40	-1.4
1,170,132	-		PFR28_01063	0.40	+0.1
1,170,132	-		PFR28_01063	0.40	-0.7
1,170,242	+		PFR28_01063	0.45	-1.5
1,170,242	+		PFR28_01063	0.45	-1.0
1,170,243	-		PFR28_01063	0.45	-0.7
1,170,272	+		PFR28_01063	0.46	-2.0
1,170,335	+		PFR28_01063	0.49	-0.4
1,170,335	+		PFR28_01063	0.49	-1.4
1,170,336	-		PFR28_01063	0.49	-0.7
1,170,336	-		PFR28_01063	0.49	-1.3
1,170,336	-		PFR28_01063	0.49	-1.8
1,170,338	+		PFR28_01063	0.49	-2.5
1,170,339	-		PFR28_01063	0.49	-0.1
1,170,339	-		PFR28_01063	0.49	-0.9
1,170,369	-		PFR28_01063	0.50	-0.4
1,170,371	+		PFR28_01063	0.50	-1.7
1,170,371	+		PFR28_01063	0.50	-1.2
1,170,371	+		PFR28_01063	0.50	-1.6
1,170,371	+		PFR28_01063	0.50	+0.1
1,170,371	+		PFR28_01063	0.50	-1.4
1,170,372	-		PFR28_01063	0.50	-2.2
1,170,372	-		PFR28_01063	0.50	-4.8
1,170,372	-		PFR28_01063	0.50	-1.1
1,170,372	-		PFR28_01063	0.50	-2.8
1,170,372	-		PFR28_01063	0.50	-2.1
1,170,372	-		PFR28_01063	0.50	-0.4
1,170,372	-		PFR28_01063	0.50	-1.8
1,170,372	-		PFR28_01063	0.50	-2.8
1,170,372	-		PFR28_01063	0.50	-1.9
1,170,372	-		PFR28_01063	0.50	-1.6
1,170,372	-		PFR28_01063	0.50	-1.0
1,170,372	-		PFR28_01063	0.50	-1.5
1,170,539	+		PFR28_01063	0.57	-3.1
1,170,540	-		PFR28_01063	0.57	-1.0
1,170,542	+		PFR28_01063	0.57	-2.1
1,170,542	+		PFR28_01063	0.57	-0.4
1,170,542	+		PFR28_01063	0.57	-1.9
1,170,543	-		PFR28_01063	0.57	-2.8
1,170,543	-		PFR28_01063	0.57	-2.0
1,170,543	-		PFR28_01063	0.57	-0.4
1,170,579	+		PFR28_01063	0.59	-0.8
1,170,579	+		PFR28_01063	0.59	-2.7
1,170,671	+		PFR28_01063	0.63	+0.6
1,170,680	+		PFR28_01063	0.63	-0.1
1,170,680	+		PFR28_01063	0.63	-0.3
1,170,680	+		PFR28_01063	0.63	-1.8
1,170,680	+		PFR28_01063	0.63	-0.2
1,170,680	+		PFR28_01063	0.63	-0.6
1,170,680	+		PFR28_01063	0.63	-3.4
1,170,680	+		PFR28_01063	0.63	-2.3
1,170,681	-		PFR28_01063	0.63	-0.2
1,170,681	-		PFR28_01063	0.63	-1.3
1,170,977	+		PFR28_01063	0.75	-1.0
1,170,978	-		PFR28_01063	0.75	-0.9
1,171,139	+		PFR28_01063	0.82	-0.7
1,171,139	+		PFR28_01063	0.82	-3.1
1,171,140	-		PFR28_01063	0.82	-1.7
1,171,288	+		PFR28_01063	0.88	-1.8
1,171,288	+		PFR28_01063	0.88	-1.8
1,171,288	+		PFR28_01063	0.88	-0.4
1,171,288	+		PFR28_01063	0.88	-3.0
1,171,291	-		PFR28_01063	0.89	-2.0
1,171,291	-		PFR28_01063	0.89	-0.8
1,171,291	-		PFR28_01063	0.89	-1.3
1,171,291	-		PFR28_01063	0.89	-0.3
1,171,302	+		PFR28_01063	0.89	-2.8
1,171,331	+				+1.6
1,171,332	-				-1.6
1,171,391	+				-0.8
1,171,391	+				-1.0
1,171,392	-				-1.7
1,171,392	-				-1.3
1,171,392	-				+1.6
1,171,392	-				-1.0
1,171,392	-				-1.7
1,171,433	+				-2.2
1,171,433	+				-1.4
1,171,433	+				-2.9
1,171,434	-				-2.3
1,171,434	-				-2.3
1,171,434	-				-0.4
1,171,434	-				-1.9
1,171,497	+				-2.4
1,171,560	+				-0.1
1,171,561	-				-2.6
1,171,566	+				-1.6
1,171,566	+				-1.3
1,171,566	+				-1.3
1,171,566	+				-0.9
1,171,566	+				-2.1
1,171,566	+				-0.2
1,171,566	+				-2.6
1,171,567	-				-0.4
1,171,567	-				+0.6
1,171,567	-				-2.4
1,171,567	-				-1.4
1,171,567	-				-1.4
1,171,567	-				-2.5
1,171,567	-				-0.8
1,171,567	-				-2.3
1,171,614	+				+0.7
1,171,614	+				-3.0
1,171,614	+				-1.2
1,171,650	+				-2.4
1,171,899	+		PFR28_01064	0.23	-2.1
1,171,899	+		PFR28_01064	0.23	-2.7
1,171,899	+		PFR28_01064	0.23	-1.6
1,171,900	-		PFR28_01064	0.23	-1.8
1,171,900	-		PFR28_01064	0.23	-2.3
1,171,995	+		PFR28_01064	0.30	-1.8
1,171,995	+		PFR28_01064	0.30	-3.6
1,171,995	+		PFR28_01064	0.30	-0.5
1,171,995	+		PFR28_01064	0.30	-0.9
1,171,995	+		PFR28_01064	0.30	+1.6
1,171,996	-		PFR28_01064	0.30	-1.0
1,171,996	-		PFR28_01064	0.30	-1.9
1,171,996	-		PFR28_01064	0.30	-1.1
1,172,039	+		PFR28_01064	0.33	-1.1
1,172,040	-		PFR28_01064	0.33	-0.8
1,172,199	+		PFR28_01064	0.44	-3.3
1,172,200	-		PFR28_01064	0.44	+0.8
1,172,200	-		PFR28_01064	0.44	-1.9
1,172,200	-		PFR28_01064	0.44	-1.3
1,172,286	+		PFR28_01064	0.50	-2.3
1,172,286	+		PFR28_01064	0.50	-2.4
1,172,286	+		PFR28_01064	0.50	-1.5
1,172,286	+		PFR28_01064	0.50	-1.6
1,172,286	+		PFR28_01064	0.50	-1.4
1,172,286	+		PFR28_01064	0.50	-0.8
1,172,286	+		PFR28_01064	0.50	-3.1
1,172,286	+		PFR28_01064	0.50	-3.2
1,172,286	+		PFR28_01064	0.50	+0.8
1,172,286	+		PFR28_01064	0.50	-1.4
1,172,286	+		PFR28_01064	0.50	-1.1
1,172,286	+		PFR28_01064	0.50	-1.7
1,172,287	-		PFR28_01064	0.50	-0.6
1,172,287	-		PFR28_01064	0.50	-2.8
1,172,287	-		PFR28_01064	0.50	-1.4
1,172,287	-		PFR28_01064	0.50	-2.8
1,172,287	-		PFR28_01064	0.50	-1.4
1,172,287	-		PFR28_01064	0.50	-3.4
1,172,287	-		PFR28_01064	0.50	+0.4
1,172,287	-		PFR28_01064	0.50	-1.9
1,172,287	-		PFR28_01064	0.50	-1.3
1,172,287	-		PFR28_01064	0.50	-2.1
1,172,287	-		PFR28_01064	0.50	-2.5
1,172,287	-		PFR28_01064	0.50	-2.4
1,172,370	+		PFR28_01064	0.56	-2.6
1,172,371	-		PFR28_01064	0.56	-2.9
1,172,379	+		PFR28_01064	0.56	+0.2