Strain Fitness in Pseudomonas sp. RS175 around PFR28_00752

Experiment: Adenosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00751 and PFR28_00752 are separated by 65 nucleotidesPFR28_00752 and PFR28_00753 are separated by 13 nucleotides PFR28_00751: PFR28_00751 - Sensor histidine kinase RcsC, at 794,481 to 796,349 _00751 PFR28_00752: PFR28_00752 - Biotin transporter, at 796,415 to 797,281 _00752 PFR28_00753: PFR28_00753 - HTH-type transcriptional regulator DmlR, at 797,295 to 798,203 _00753 Position (kb) 796 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 795.428 kb on + strand, within PFR28_00751at 795.469 kb on + strand, within PFR28_00751at 795.470 kb on - strand, within PFR28_00751at 795.538 kb on + strand, within PFR28_00751at 795.539 kb on - strand, within PFR28_00751at 795.539 kb on - strand, within PFR28_00751at 795.539 kb on - strand, within PFR28_00751at 795.907 kb on - strand, within PFR28_00751at 796.089 kb on - strand, within PFR28_00751at 796.161 kb on + strand, within PFR28_00751at 796.161 kb on + strand, within PFR28_00751at 796.162 kb on - strand, within PFR28_00751at 796.162 kb on - strand, within PFR28_00751at 796.162 kb on - strand, within PFR28_00751at 796.162 kb on - strand, within PFR28_00751at 796.162 kb on - strand, within PFR28_00751at 796.175 kb on + strandat 796.175 kb on + strandat 796.384 kb on + strandat 796.421 kb on + strandat 796.421 kb on + strandat 796.422 kb on - strandat 796.425 kb on + strandat 796.499 kb on + strandat 796.499 kb on + strandat 796.499 kb on + strandat 796.499 kb on + strandat 796.499 kb on + strandat 796.499 kb on + strandat 796.499 kb on + strandat 796.500 kb on - strandat 796.500 kb on - strandat 796.500 kb on - strandat 796.500 kb on - strandat 796.500 kb on - strandat 796.500 kb on - strandat 796.500 kb on - strandat 796.515 kb on + strand, within PFR28_00752at 796.516 kb on - strand, within PFR28_00752at 796.516 kb on - strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.628 kb on + strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.629 kb on - strand, within PFR28_00752at 796.641 kb on - strand, within PFR28_00752at 796.684 kb on + strand, within PFR28_00752at 796.684 kb on + strand, within PFR28_00752at 796.684 kb on + strand, within PFR28_00752at 796.684 kb on + strand, within PFR28_00752at 796.684 kb on + strand, within PFR28_00752at 796.685 kb on - strand, within PFR28_00752at 796.685 kb on - strand, within PFR28_00752at 796.800 kb on - strand, within PFR28_00752at 796.862 kb on + strand, within PFR28_00752at 796.926 kb on - strand, within PFR28_00752at 796.940 kb on + strand, within PFR28_00752at 796.941 kb on - strand, within PFR28_00752at 796.946 kb on + strand, within PFR28_00752at 796.946 kb on + strand, within PFR28_00752at 796.946 kb on + strand, within PFR28_00752at 796.946 kb on + strand, within PFR28_00752at 796.947 kb on - strand, within PFR28_00752at 796.947 kb on - strand, within PFR28_00752at 796.947 kb on - strand, within PFR28_00752at 796.947 kb on - strand, within PFR28_00752at 796.947 kb on - strand, within PFR28_00752at 796.947 kb on - strand, within PFR28_00752at 797.075 kb on + strand, within PFR28_00752at 797.075 kb on + strand, within PFR28_00752at 797.076 kb on - strand, within PFR28_00752at 797.103 kb on + strand, within PFR28_00752at 797.104 kb on - strand, within PFR28_00752at 797.104 kb on - strand, within PFR28_00752at 797.342 kb on + strandat 797.342 kb on + strandat 797.342 kb on + strandat 797.343 kb on - strandat 797.343 kb on - strandat 797.343 kb on - strandat 797.343 kb on - strandat 797.392 kb on + strand, within PFR28_00753at 797.392 kb on + strand, within PFR28_00753at 797.393 kb on - strand, within PFR28_00753at 797.393 kb on - strand, within PFR28_00753at 797.393 kb on - strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.630 kb on - strand, within PFR28_00753at 797.630 kb on - strand, within PFR28_00753at 797.630 kb on - strand, within PFR28_00753at 798.011 kb on - strand, within PFR28_00753at 798.120 kb on + strandat 798.257 kb on + strandat 798.275 kb on + strandat 798.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM
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795,428 + PFR28_00751 0.51 +0.5
795,469 + PFR28_00751 0.53 -0.8
795,470 - PFR28_00751 0.53 +1.5
795,538 + PFR28_00751 0.57 -1.2
795,539 - PFR28_00751 0.57 +0.6
795,539 - PFR28_00751 0.57 -0.1
795,539 - PFR28_00751 0.57 -0.4
795,907 - PFR28_00751 0.76 +0.2
796,089 - PFR28_00751 0.86 +0.7
796,161 + PFR28_00751 0.90 +0.4
796,161 + PFR28_00751 0.90 -0.2
796,162 - PFR28_00751 0.90 +0.0
796,162 - PFR28_00751 0.90 -0.9
796,162 - PFR28_00751 0.90 -2.4
796,162 - PFR28_00751 0.90 -0.0
796,162 - PFR28_00751 0.90 -0.3
796,175 + +0.4
796,175 + +0.7
796,384 + -1.1
796,421 + +0.7
796,421 + +0.4
796,422 - -1.6
796,425 + -0.3
796,499 + +0.6
796,499 + +0.1
796,499 + -0.3
796,499 + -0.2
796,499 + -0.5
796,499 + -0.3
796,499 + -0.3
796,500 - -0.4
796,500 - -0.4
796,500 - +0.1
796,500 - +0.8
796,500 - -0.2
796,500 - +1.1
796,500 - -0.0
796,515 + PFR28_00752 0.12 +0.4
796,516 - PFR28_00752 0.12 -1.4
796,516 - PFR28_00752 0.12 +0.5
796,628 + PFR28_00752 0.25 +2.5
796,628 + PFR28_00752 0.25 -1.8
796,628 + PFR28_00752 0.25 -0.4
796,628 + PFR28_00752 0.25 +0.2
796,628 + PFR28_00752 0.25 -0.5
796,628 + PFR28_00752 0.25 -0.4
796,628 + PFR28_00752 0.25 +0.5
796,628 + PFR28_00752 0.25 +1.0
796,628 + PFR28_00752 0.25 -2.3
796,629 - PFR28_00752 0.25 +0.8
796,629 - PFR28_00752 0.25 -1.1
796,629 - PFR28_00752 0.25 -0.8
796,629 - PFR28_00752 0.25 +1.6
796,629 - PFR28_00752 0.25 +0.0
796,629 - PFR28_00752 0.25 +1.4
796,629 - PFR28_00752 0.25 -0.3
796,641 - PFR28_00752 0.26 -0.9
796,684 + PFR28_00752 0.31 -0.1
796,684 + PFR28_00752 0.31 +0.1
796,684 + PFR28_00752 0.31 -0.6
796,684 + PFR28_00752 0.31 +0.6
796,684 + PFR28_00752 0.31 -2.1
796,685 - PFR28_00752 0.31 +0.2
796,685 - PFR28_00752 0.31 -0.3
796,800 - PFR28_00752 0.44 +0.4
796,862 + PFR28_00752 0.52 +2.2
796,926 - PFR28_00752 0.59 -1.3
796,940 + PFR28_00752 0.61 +0.5
796,941 - PFR28_00752 0.61 +1.4
796,946 + PFR28_00752 0.61 -0.3
796,946 + PFR28_00752 0.61 -0.2
796,946 + PFR28_00752 0.61 +0.5
796,946 + PFR28_00752 0.61 +0.4
796,947 - PFR28_00752 0.61 -1.1
796,947 - PFR28_00752 0.61 +0.5
796,947 - PFR28_00752 0.61 +0.8
796,947 - PFR28_00752 0.61 +0.8
796,947 - PFR28_00752 0.61 +1.5
796,947 - PFR28_00752 0.61 -0.2
797,075 + PFR28_00752 0.76 +0.1
797,075 + PFR28_00752 0.76 +0.4
797,076 - PFR28_00752 0.76 +0.9
797,103 + PFR28_00752 0.79 -0.3
797,104 - PFR28_00752 0.79 -0.2
797,104 - PFR28_00752 0.79 +0.1
797,342 + -0.2
797,342 + -1.7
797,342 + +0.0
797,343 - +0.2
797,343 - +2.0
797,343 - +0.1
797,343 - +1.2
797,392 + PFR28_00753 0.11 -0.6
797,392 + PFR28_00753 0.11 +0.4
797,393 - PFR28_00753 0.11 -0.6
797,393 - PFR28_00753 0.11 -1.2
797,393 - PFR28_00753 0.11 -0.3
797,629 + PFR28_00753 0.37 -0.1
797,629 + PFR28_00753 0.37 -0.6
797,629 + PFR28_00753 0.37 -0.7
797,629 + PFR28_00753 0.37 +1.0
797,630 - PFR28_00753 0.37 -0.1
797,630 - PFR28_00753 0.37 -0.2
797,630 - PFR28_00753 0.37 +0.6
798,011 - PFR28_00753 0.79 -0.2
798,120 + +0.6
798,257 + +1.3
798,275 + +0.2
798,276 - +0.8

Or see this region's nucleotide sequence