Strain Fitness in Pseudomonas sp. RS175 around PFR28_00310

Experiment: Adenosine (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00308 and PFR28_00309 are separated by 67 nucleotidesPFR28_00309 and PFR28_00310 are separated by 291 nucleotidesPFR28_00310 and PFR28_00311 are separated by 78 nucleotides PFR28_00308: PFR28_00308 - hypothetical protein, at 336,944 to 337,711 _00308 PFR28_00309: PFR28_00309 - hypothetical protein, at 337,779 to 338,327 _00309 PFR28_00310: PFR28_00310 - 'Inosine-5'-monophosphate dehydrogenase' transl_table=11, at 338,619 to 340,088 _00310 PFR28_00311: PFR28_00311 - GMP synthase [glutamine-hydrolyzing], at 340,167 to 341,744 _00311 Position (kb) 338 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 337.698 kb on - strandat 337.730 kb on + strandat 337.731 kb on - strandat 337.731 kb on - strandat 337.864 kb on + strand, within PFR28_00309at 337.864 kb on + strand, within PFR28_00309at 337.864 kb on + strand, within PFR28_00309at 337.874 kb on + strand, within PFR28_00309at 337.874 kb on + strand, within PFR28_00309at 337.874 kb on + strand, within PFR28_00309at 337.874 kb on + strand, within PFR28_00309at 337.874 kb on + strand, within PFR28_00309at 337.875 kb on - strand, within PFR28_00309at 337.875 kb on - strand, within PFR28_00309at 337.875 kb on - strand, within PFR28_00309at 337.875 kb on - strand, within PFR28_00309at 338.012 kb on + strand, within PFR28_00309at 338.024 kb on + strand, within PFR28_00309at 338.024 kb on + strand, within PFR28_00309at 338.024 kb on + strand, within PFR28_00309at 338.024 kb on + strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.025 kb on - strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.028 kb on + strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.029 kb on - strand, within PFR28_00309at 338.325 kb on + strandat 338.325 kb on + strandat 338.325 kb on + strandat 338.326 kb on - strandat 338.326 kb on - strandat 338.326 kb on - strandat 338.326 kb on - strandat 338.329 kb on + strandat 338.329 kb on + strandat 338.329 kb on + strandat 338.330 kb on - strandat 338.330 kb on - strandat 338.330 kb on - strandat 338.330 kb on - strandat 338.404 kb on - strandat 338.410 kb on + strandat 338.422 kb on - strandat 338.491 kb on + strandat 338.491 kb on + strandat 338.491 kb on + strandat 338.491 kb on + strandat 338.491 kb on + strandat 338.491 kb on + strandat 338.492 kb on - strandat 338.492 kb on - strandat 338.492 kb on - strandat 338.492 kb on - strandat 338.492 kb on - strandat 338.492 kb on - strandat 338.535 kb on + strandat 338.536 kb on - strandat 338.539 kb on - strandat 338.539 kb on - strandat 338.539 kb on - strandat 338.550 kb on + strandat 340.081 kb on + strandat 340.153 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM
remove
337,698 - +0.3
337,730 + +0.4
337,731 - +1.0
337,731 - -0.7
337,864 + PFR28_00309 0.15 +0.2
337,864 + PFR28_00309 0.15 +0.1
337,864 + PFR28_00309 0.15 +0.0
337,874 + PFR28_00309 0.17 -1.0
337,874 + PFR28_00309 0.17 +0.1
337,874 + PFR28_00309 0.17 -0.1
337,874 + PFR28_00309 0.17 -1.0
337,874 + PFR28_00309 0.17 +0.8
337,875 - PFR28_00309 0.17 -0.5
337,875 - PFR28_00309 0.17 -0.1
337,875 - PFR28_00309 0.17 -0.0
337,875 - PFR28_00309 0.17 +0.2
338,012 + PFR28_00309 0.42 -1.4
338,024 + PFR28_00309 0.45 -0.5
338,024 + PFR28_00309 0.45 +0.4
338,024 + PFR28_00309 0.45 +0.6
338,024 + PFR28_00309 0.45 -1.2
338,025 - PFR28_00309 0.45 -1.0
338,025 - PFR28_00309 0.45 -0.3
338,025 - PFR28_00309 0.45 +0.1
338,025 - PFR28_00309 0.45 -0.9
338,025 - PFR28_00309 0.45 -1.0
338,025 - PFR28_00309 0.45 +1.8
338,025 - PFR28_00309 0.45 -0.0
338,028 + PFR28_00309 0.45 +0.4
338,028 + PFR28_00309 0.45 +0.0
338,028 + PFR28_00309 0.45 -0.5
338,028 + PFR28_00309 0.45 -0.1
338,028 + PFR28_00309 0.45 +1.1
338,028 + PFR28_00309 0.45 +1.1
338,028 + PFR28_00309 0.45 +0.2
338,028 + PFR28_00309 0.45 +0.5
338,028 + PFR28_00309 0.45 -0.0
338,028 + PFR28_00309 0.45 +0.4
338,028 + PFR28_00309 0.45 +0.1
338,028 + PFR28_00309 0.45 +1.5
338,028 + PFR28_00309 0.45 +0.1
338,028 + PFR28_00309 0.45 +0.9
338,028 + PFR28_00309 0.45 -0.0
338,029 - PFR28_00309 0.46 -0.4
338,029 - PFR28_00309 0.46 +0.1
338,029 - PFR28_00309 0.46 +0.5
338,029 - PFR28_00309 0.46 +1.1
338,029 - PFR28_00309 0.46 -1.3
338,029 - PFR28_00309 0.46 -1.5
338,029 - PFR28_00309 0.46 -1.3
338,029 - PFR28_00309 0.46 +0.7
338,029 - PFR28_00309 0.46 -0.5
338,029 - PFR28_00309 0.46 -1.7
338,029 - PFR28_00309 0.46 +0.1
338,029 - PFR28_00309 0.46 +0.3
338,029 - PFR28_00309 0.46 +0.2
338,029 - PFR28_00309 0.46 +0.3
338,325 + +0.4
338,325 + +0.9
338,325 + -0.7
338,326 - +0.4
338,326 - -0.9
338,326 - +0.4
338,326 - +0.8
338,329 + +0.7
338,329 + -1.8
338,329 + +0.5
338,330 - -2.0
338,330 - -0.4
338,330 - -0.8
338,330 - +1.5
338,404 - +0.3
338,410 + +0.0
338,422 - -0.7
338,491 + -1.8
338,491 + +0.8
338,491 + -0.5
338,491 + -0.6
338,491 + +0.2
338,491 + -0.8
338,492 - +0.5
338,492 - +0.6
338,492 - +0.8
338,492 - -0.5
338,492 - +0.8
338,492 - +2.3
338,535 + -0.1
338,536 - -0.1
338,539 - +0.3
338,539 - +0.4
338,539 - +0.1
338,550 + +1.1
340,081 + +0.6
340,153 + +1.9

Or see this region's nucleotide sequence