Experiment: Adenosine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00290 and PFR28_00291 are separated by 3 nucleotides PFR28_00291 and PFR28_00292 are separated by 14 nucleotides PFR28_00292 and PFR28_00293 are separated by 92 nucleotides PFR28_00293 and PFR28_00294 are separated by 27 nucleotides
PFR28_00290: PFR28_00290 - Chaperone protein HscA, at 317,910 to 319,772
_00290
PFR28_00291: PFR28_00291 - 2Fe-2S ferredoxin, at 319,776 to 320,117
_00291
PFR28_00292: PFR28_00292 - Protein IscX, at 320,132 to 320,332
_00292
PFR28_00293: PFR28_00293 - Nucleoside diphosphate kinase, at 320,425 to 320,850
_00293
PFR28_00294: PFR28_00294 - Dual-specificity RNA methyltransferase RlmN, at 320,878 to 322,026
_00294
Position (kb) 320
321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 320.196 kb on + strand, within PFR28_00292 at 320.196 kb on + strand, within PFR28_00292 at 320.196 kb on + strand, within PFR28_00292 at 320.196 kb on + strand, within PFR28_00292 at 320.197 kb on - strand, within PFR28_00292 at 320.197 kb on - strand, within PFR28_00292 at 320.207 kb on + strand, within PFR28_00292 at 320.207 kb on + strand, within PFR28_00292 at 320.338 kb on + strand at 320.338 kb on + strand at 320.338 kb on + strand at 320.338 kb on + strand at 320.343 kb on + strand at 320.343 kb on + strand at 320.351 kb on + strand at 320.389 kb on + strand at 320.848 kb on + strand at 320.848 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.981 kb on + strand at 321.172 kb on + strand, within PFR28_00294 at 321.270 kb on + strand, within PFR28_00294 at 321.270 kb on + strand, within PFR28_00294 at 321.604 kb on + strand, within PFR28_00294 at 321.604 kb on + strand, within PFR28_00294 at 321.604 kb on + strand, within PFR28_00294 at 321.612 kb on + strand, within PFR28_00294 at 321.613 kb on - strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.682 kb on + strand, within PFR28_00294 at 321.682 kb on + strand, within PFR28_00294 at 321.682 kb on + strand, within PFR28_00294
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) 10 mM remove 320,196 + PFR28_00292 0.32 +0.6 320,196 + PFR28_00292 0.32 +0.9 320,196 + PFR28_00292 0.32 +0.4 320,196 + PFR28_00292 0.32 +0.1 320,197 - PFR28_00292 0.32 -1.9 320,197 - PFR28_00292 0.32 -1.6 320,207 + PFR28_00292 0.37 +2.1 320,207 + PFR28_00292 0.37 +1.0 320,338 + +0.0 320,338 + -0.1 320,338 + -0.1 320,338 + +0.7 320,343 + -1.8 320,343 + +0.5 320,351 + -0.0 320,389 + -0.5 320,848 + -0.3 320,848 + +0.4 320,852 + -0.3 320,852 + -0.1 320,852 + -0.4 320,852 + -0.3 320,852 + +0.3 320,852 + -0.2 320,852 + -2.4 320,981 + +1.0 321,172 + PFR28_00294 0.26 -2.5 321,270 + PFR28_00294 0.34 -1.9 321,270 + PFR28_00294 0.34 +1.5 321,604 + PFR28_00294 0.63 -1.0 321,604 + PFR28_00294 0.63 -0.0 321,604 + PFR28_00294 0.63 -2.0 321,612 + PFR28_00294 0.64 +0.5 321,613 - PFR28_00294 0.64 -2.0 321,640 + PFR28_00294 0.66 -0.0 321,640 + PFR28_00294 0.66 +1.6 321,640 + PFR28_00294 0.66 -1.2 321,640 + PFR28_00294 0.66 +1.0 321,640 + PFR28_00294 0.66 -0.0 321,682 + PFR28_00294 0.70 -1.4 321,682 + PFR28_00294 0.70 -0.1 321,682 + PFR28_00294 0.70 -2.3
Or see this region's nucleotide sequence