Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4647 and Echvi_4648 are separated by 459 nucleotides Echvi_4648 and Echvi_4649 are separated by 21 nucleotides
Echvi_4647: Echvi_4647 - Outer membrane receptor proteins, mostly Fe transport, at 5,561,618 to 5,564,674
_4647
Echvi_4648: Echvi_4648 - hypothetical protein, at 5,565,134 to 5,565,676
_4648
Echvi_4649: Echvi_4649 - Type III restriction enzyme, res subunit., at 5,565,698 to 5,567,629
_4649
Position (kb) 5565
5566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5564.189 kb on - strand, within Echvi_4647 at 5564.189 kb on - strand, within Echvi_4647 at 5564.301 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.357 kb on - strand, within Echvi_4647 at 5564.375 kb on + strand at 5564.375 kb on + strand at 5564.375 kb on + strand at 5564.376 kb on - strand at 5564.392 kb on + strand at 5564.446 kb on + strand at 5564.450 kb on - strand at 5564.450 kb on - strand at 5564.489 kb on - strand at 5564.496 kb on - strand at 5564.606 kb on + strand at 5564.607 kb on - strand at 5564.607 kb on - strand at 5564.662 kb on + strand at 5564.662 kb on + strand at 5564.663 kb on - strand at 5564.663 kb on - strand at 5564.663 kb on - strand at 5564.730 kb on + strand at 5564.731 kb on - strand at 5564.733 kb on + strand at 5564.837 kb on + strand at 5564.838 kb on - strand at 5564.877 kb on + strand at 5564.877 kb on + strand at 5564.878 kb on - strand at 5564.887 kb on - strand at 5564.942 kb on + strand at 5564.973 kb on - strand at 5564.976 kb on + strand at 5564.976 kb on + strand at 5564.977 kb on - strand at 5565.001 kb on + strand at 5565.002 kb on - strand at 5565.179 kb on + strand at 5565.180 kb on - strand at 5565.180 kb on - strand at 5565.180 kb on - strand at 5565.180 kb on - strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.189 kb on - strand, within Echvi_4648 at 5565.189 kb on - strand, within Echvi_4648 at 5565.189 kb on - strand, within Echvi_4648 at 5565.194 kb on + strand, within Echvi_4648 at 5565.195 kb on - strand, within Echvi_4648 at 5565.195 kb on - strand, within Echvi_4648 at 5565.221 kb on + strand, within Echvi_4648 at 5565.251 kb on + strand, within Echvi_4648 at 5565.252 kb on - strand, within Echvi_4648 at 5565.435 kb on - strand, within Echvi_4648 at 5565.435 kb on - strand, within Echvi_4648 at 5565.446 kb on + strand, within Echvi_4648 at 5565.446 kb on + strand, within Echvi_4648 at 5565.447 kb on - strand, within Echvi_4648 at 5565.468 kb on + strand, within Echvi_4648 at 5565.537 kb on + strand, within Echvi_4648 at 5565.538 kb on - strand, within Echvi_4648 at 5565.538 kb on - strand, within Echvi_4648 at 5565.539 kb on + strand, within Echvi_4648 at 5565.540 kb on - strand, within Echvi_4648 at 5565.549 kb on + strand, within Echvi_4648 at 5565.549 kb on + strand, within Echvi_4648 at 5565.549 kb on + strand, within Echvi_4648 at 5565.550 kb on - strand, within Echvi_4648 at 5565.550 kb on - strand, within Echvi_4648 at 5565.618 kb on + strand, within Echvi_4648 at 5565.618 kb on + strand, within Echvi_4648 at 5565.619 kb on - strand, within Echvi_4648 at 5565.619 kb on - strand, within Echvi_4648 at 5565.619 kb on - strand, within Echvi_4648 at 5565.641 kb on + strand at 5565.641 kb on + strand at 5565.641 kb on + strand at 5565.642 kb on - strand at 5565.652 kb on + strand at 5565.653 kb on - strand at 5565.653 kb on - strand at 5565.675 kb on - strand at 5565.680 kb on + strand at 5565.699 kb on + strand at 5565.710 kb on - strand at 5565.710 kb on - strand at 5565.710 kb on - strand at 5565.711 kb on + strand at 5565.711 kb on + strand at 5565.711 kb on + strand at 5565.712 kb on - strand at 5565.717 kb on + strand at 5565.718 kb on - strand at 5565.721 kb on + strand at 5565.730 kb on - strand at 5565.730 kb on - strand at 5565.768 kb on + strand at 5565.813 kb on - strand at 5566.039 kb on + strand, within Echvi_4649 at 5566.063 kb on + strand, within Echvi_4649 at 5566.212 kb on + strand, within Echvi_4649 at 5566.213 kb on - strand, within Echvi_4649 at 5566.213 kb on - strand, within Echvi_4649 at 5566.285 kb on - strand, within Echvi_4649 at 5566.291 kb on - strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.313 kb on - strand, within Echvi_4649 at 5566.313 kb on - strand, within Echvi_4649 at 5566.419 kb on + strand, within Echvi_4649 at 5566.481 kb on + strand, within Echvi_4649 at 5566.481 kb on + strand, within Echvi_4649 at 5566.484 kb on + strand, within Echvi_4649 at 5566.531 kb on + strand, within Echvi_4649 at 5566.535 kb on + strand, within Echvi_4649 at 5566.616 kb on + strand, within Echvi_4649 at 5566.617 kb on - strand, within Echvi_4649 at 5566.630 kb on + strand, within Echvi_4649 at 5566.630 kb on + strand, within Echvi_4649 at 5566.631 kb on - strand, within Echvi_4649 at 5566.631 kb on - strand, within Echvi_4649 at 5566.632 kb on + strand, within Echvi_4649 at 5566.632 kb on + strand, within Echvi_4649
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,564,189 - Echvi_4647 0.84 -2.1 5,564,189 - Echvi_4647 0.84 -1.2 5,564,301 + Echvi_4647 0.88 +1.3 5,564,356 + Echvi_4647 0.90 -1.1 5,564,356 + Echvi_4647 0.90 +0.5 5,564,356 + Echvi_4647 0.90 -0.3 5,564,356 + Echvi_4647 0.90 -2.1 5,564,357 - Echvi_4647 0.90 +0.1 5,564,375 + -1.2 5,564,375 + -0.4 5,564,375 + +1.1 5,564,376 - +0.4 5,564,392 + -2.5 5,564,446 + -1.2 5,564,450 - -1.0 5,564,450 - -1.4 5,564,489 - -0.1 5,564,496 - +0.4 5,564,606 + -2.4 5,564,607 - +0.6 5,564,607 - -0.7 5,564,662 + -1.1 5,564,662 + +2.3 5,564,663 - -0.5 5,564,663 - +0.7 5,564,663 - -2.4 5,564,730 + -1.9 5,564,731 - +0.6 5,564,733 + +0.2 5,564,837 + -0.8 5,564,838 - +0.2 5,564,877 + -1.3 5,564,877 + -0.5 5,564,878 - -0.3 5,564,887 - -3.7 5,564,942 + +0.5 5,564,973 - +1.6 5,564,976 + +1.2 5,564,976 + -0.4 5,564,977 - -1.4 5,565,001 + +0.1 5,565,002 - -1.3 5,565,179 + +1.1 5,565,180 - +2.2 5,565,180 - +1.3 5,565,180 - +0.7 5,565,180 - -1.4 5,565,188 + -0.9 5,565,188 + -0.6 5,565,188 + -1.2 5,565,188 + -0.4 5,565,188 + +0.7 5,565,188 + -3.3 5,565,188 + +2.5 5,565,189 - Echvi_4648 0.10 +1.8 5,565,189 - Echvi_4648 0.10 +2.8 5,565,189 - Echvi_4648 0.10 +0.5 5,565,194 + Echvi_4648 0.11 +0.9 5,565,195 - Echvi_4648 0.11 -0.9 5,565,195 - Echvi_4648 0.11 -2.0 5,565,221 + Echvi_4648 0.16 +0.8 5,565,251 + Echvi_4648 0.22 +0.4 5,565,252 - Echvi_4648 0.22 +1.4 5,565,435 - Echvi_4648 0.55 +0.5 5,565,435 - Echvi_4648 0.55 +0.8 5,565,446 + Echvi_4648 0.57 -2.9 5,565,446 + Echvi_4648 0.57 +1.2 5,565,447 - Echvi_4648 0.58 +1.7 5,565,468 + Echvi_4648 0.62 +0.8 5,565,537 + Echvi_4648 0.74 -0.1 5,565,538 - Echvi_4648 0.74 +1.1 5,565,538 - Echvi_4648 0.74 -0.9 5,565,539 + Echvi_4648 0.75 -0.0 5,565,540 - Echvi_4648 0.75 -2.0 5,565,549 + Echvi_4648 0.76 +0.2 5,565,549 + Echvi_4648 0.76 -2.5 5,565,549 + Echvi_4648 0.76 +1.9 5,565,550 - Echvi_4648 0.77 -0.9 5,565,550 - Echvi_4648 0.77 -0.6 5,565,618 + Echvi_4648 0.89 +2.1 5,565,618 + Echvi_4648 0.89 +2.4 5,565,619 - Echvi_4648 0.89 -2.3 5,565,619 - Echvi_4648 0.89 +3.0 5,565,619 - Echvi_4648 0.89 +0.4 5,565,641 + -1.3 5,565,641 + +1.1 5,565,641 + +2.3 5,565,642 - +1.3 5,565,652 + -0.3 5,565,653 - +0.4 5,565,653 - +2.1 5,565,675 - -1.1 5,565,680 + -2.3 5,565,699 + +0.8 5,565,710 - +1.9 5,565,710 - -0.3 5,565,710 - -3.5 5,565,711 + +1.4 5,565,711 + +1.0 5,565,711 + +1.0 5,565,712 - -0.8 5,565,717 + -1.7 5,565,718 - +2.8 5,565,721 + -1.7 5,565,730 - -4.5 5,565,730 - -2.0 5,565,768 + +0.4 5,565,813 - +0.4 5,566,039 + Echvi_4649 0.18 -0.2 5,566,063 + Echvi_4649 0.19 -1.5 5,566,212 + Echvi_4649 0.27 +0.8 5,566,213 - Echvi_4649 0.27 +0.2 5,566,213 - Echvi_4649 0.27 +2.0 5,566,285 - Echvi_4649 0.30 -0.8 5,566,291 - Echvi_4649 0.31 +1.3 5,566,312 + Echvi_4649 0.32 +3.4 5,566,312 + Echvi_4649 0.32 +1.5 5,566,312 + Echvi_4649 0.32 -1.7 5,566,312 + Echvi_4649 0.32 -1.6 5,566,312 + Echvi_4649 0.32 -2.9 5,566,313 - Echvi_4649 0.32 +0.8 5,566,313 - Echvi_4649 0.32 -1.9 5,566,419 + Echvi_4649 0.37 -2.1 5,566,481 + Echvi_4649 0.41 +1.0 5,566,481 + Echvi_4649 0.41 -1.4 5,566,484 + Echvi_4649 0.41 -0.6 5,566,531 + Echvi_4649 0.43 -2.4 5,566,535 + Echvi_4649 0.43 +0.1 5,566,616 + Echvi_4649 0.48 +1.2 5,566,617 - Echvi_4649 0.48 -1.2 5,566,630 + Echvi_4649 0.48 -1.4 5,566,630 + Echvi_4649 0.48 -1.7 5,566,631 - Echvi_4649 0.48 -0.3 5,566,631 - Echvi_4649 0.48 -1.4 5,566,632 + Echvi_4649 0.48 -2.1 5,566,632 + Echvi_4649 0.48 -0.2
Or see this region's nucleotide sequence