Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4628 and Echvi_4629 are separated by 132 nucleotides Echvi_4629 and Echvi_4630 are separated by 119 nucleotides Echvi_4630 and Echvi_4631 are separated by 70 nucleotides
Echvi_4628: Echvi_4628 - adenylosuccinate synthase, at 5,537,833 to 5,539,098
_4628
Echvi_4629: Echvi_4629 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 5,539,231 to 5,539,575
_4629
Echvi_4630: Echvi_4630 - Fe2+/Zn2+ uptake regulation proteins, at 5,539,695 to 5,540,162
_4630
Echvi_4631: Echvi_4631 - (p)ppGpp synthetase, RelA/SpoT family, at 5,540,233 to 5,542,455
_4631
Position (kb) 5539
5540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5539.108 kb on - strand at 5539.113 kb on - strand at 5539.113 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.203 kb on + strand at 5539.203 kb on + strand at 5539.203 kb on + strand at 5539.237 kb on + strand at 5539.296 kb on + strand, within Echvi_4629 at 5539.315 kb on + strand, within Echvi_4629 at 5539.315 kb on + strand, within Echvi_4629 at 5539.316 kb on - strand, within Echvi_4629 at 5539.341 kb on - strand, within Echvi_4629 at 5539.341 kb on - strand, within Echvi_4629 at 5539.354 kb on + strand, within Echvi_4629 at 5539.371 kb on + strand, within Echvi_4629 at 5539.411 kb on - strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.435 kb on - strand, within Echvi_4629 at 5539.437 kb on + strand, within Echvi_4629 at 5539.437 kb on + strand, within Echvi_4629 at 5539.438 kb on - strand, within Echvi_4629 at 5539.459 kb on + strand, within Echvi_4629 at 5539.563 kb on - strand at 5539.563 kb on - strand at 5539.563 kb on - strand at 5539.575 kb on + strand at 5539.575 kb on + strand at 5540.190 kb on + strand at 5540.219 kb on - strand at 5540.230 kb on - strand at 5540.230 kb on - strand at 5540.319 kb on - strand at 5540.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,539,108 - +0.2 5,539,113 - -1.9 5,539,113 - -0.1 5,539,117 - +4.5 5,539,117 - -0.2 5,539,117 - -2.1 5,539,117 - -3.0 5,539,117 - -3.1 5,539,117 - +3.1 5,539,117 - -1.4 5,539,117 - -2.0 5,539,117 - +0.7 5,539,117 - -0.8 5,539,117 - +0.3 5,539,117 - +0.1 5,539,119 - -0.6 5,539,119 - +0.6 5,539,119 - +0.6 5,539,119 - -0.0 5,539,119 - +0.4 5,539,203 + -1.8 5,539,203 + -2.2 5,539,203 + +0.8 5,539,237 + -1.0 5,539,296 + Echvi_4629 0.19 +1.2 5,539,315 + Echvi_4629 0.24 -2.1 5,539,315 + Echvi_4629 0.24 +1.2 5,539,316 - Echvi_4629 0.25 -2.6 5,539,341 - Echvi_4629 0.32 -0.4 5,539,341 - Echvi_4629 0.32 -2.5 5,539,354 + Echvi_4629 0.36 -0.9 5,539,371 + Echvi_4629 0.41 +0.3 5,539,411 - Echvi_4629 0.52 -1.8 5,539,412 + Echvi_4629 0.52 -4.5 5,539,412 + Echvi_4629 0.52 +2.3 5,539,412 + Echvi_4629 0.52 -3.4 5,539,413 - Echvi_4629 0.53 -1.6 5,539,413 - Echvi_4629 0.53 +1.8 5,539,413 - Echvi_4629 0.53 +1.0 5,539,413 - Echvi_4629 0.53 -1.2 5,539,435 - Echvi_4629 0.59 +0.9 5,539,437 + Echvi_4629 0.60 +0.8 5,539,437 + Echvi_4629 0.60 -1.4 5,539,438 - Echvi_4629 0.60 -3.3 5,539,459 + Echvi_4629 0.66 -0.1 5,539,563 - -2.8 5,539,563 - -1.7 5,539,563 - +0.9 5,539,575 + -2.7 5,539,575 + -2.9 5,540,190 + -1.8 5,540,219 - +1.2 5,540,230 - +0.4 5,540,230 - +2.3 5,540,319 - -1.7 5,540,359 + -1.2
Or see this region's nucleotide sequence