Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4604 and Echvi_4605 overlap by 4 nucleotides Echvi_4605 and Echvi_4606 are separated by 3 nucleotides Echvi_4606 and Echvi_4607 are separated by 119 nucleotides
Echvi_4604: Echvi_4604 - Threonine aldolase, at 5,513,275 to 5,514,282
_4604
Echvi_4605: Echvi_4605 - Glycerophosphoryl diester phosphodiesterase, at 5,514,279 to 5,515,181
_4605
Echvi_4606: Echvi_4606 - Protein of unknown function (DUF2721)., at 5,515,185 to 5,515,649
_4606
Echvi_4607: Echvi_4607 - Uncharacterized protein conserved in bacteria, at 5,515,769 to 5,516,602
_4607
Position (kb) 5514
5515
5516 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5513.538 kb on + strand, within Echvi_4604 at 5513.538 kb on + strand, within Echvi_4604 at 5513.539 kb on - strand, within Echvi_4604 at 5513.555 kb on + strand, within Echvi_4604 at 5513.555 kb on + strand, within Echvi_4604 at 5513.592 kb on + strand, within Echvi_4604 at 5513.657 kb on - strand at 5513.843 kb on + strand, within Echvi_4604 at 5513.908 kb on + strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5514.026 kb on + strand, within Echvi_4604 at 5514.030 kb on + strand, within Echvi_4604 at 5514.205 kb on + strand at 5514.244 kb on - strand at 5514.267 kb on + strand at 5514.274 kb on + strand at 5514.275 kb on - strand at 5514.275 kb on - strand at 5514.275 kb on - strand at 5514.417 kb on + strand, within Echvi_4605 at 5514.417 kb on + strand, within Echvi_4605 at 5514.762 kb on - strand, within Echvi_4605 at 5514.818 kb on - strand, within Echvi_4605 at 5514.852 kb on - strand, within Echvi_4605 at 5514.866 kb on + strand, within Echvi_4605 at 5514.867 kb on - strand, within Echvi_4605 at 5514.945 kb on + strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.949 kb on + strand, within Echvi_4605 at 5515.076 kb on + strand, within Echvi_4605 at 5515.186 kb on + strand at 5515.187 kb on - strand at 5515.193 kb on + strand at 5515.276 kb on - strand, within Echvi_4606 at 5515.361 kb on + strand, within Echvi_4606 at 5515.361 kb on + strand, within Echvi_4606 at 5515.362 kb on - strand, within Echvi_4606 at 5515.370 kb on + strand, within Echvi_4606 at 5515.396 kb on + strand, within Echvi_4606 at 5515.410 kb on - strand, within Echvi_4606 at 5515.456 kb on + strand, within Echvi_4606 at 5515.457 kb on - strand, within Echvi_4606 at 5515.584 kb on - strand, within Echvi_4606 at 5515.584 kb on - strand, within Echvi_4606 at 5515.586 kb on - strand, within Echvi_4606 at 5515.650 kb on - strand at 5515.672 kb on + strand at 5515.698 kb on + strand at 5515.743 kb on + strand at 5515.770 kb on + strand at 5516.003 kb on + strand, within Echvi_4607 at 5516.092 kb on - strand, within Echvi_4607 at 5516.092 kb on - strand, within Echvi_4607 at 5516.149 kb on + strand, within Echvi_4607 at 5516.174 kb on - strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.177 kb on - strand, within Echvi_4607 at 5516.177 kb on - strand, within Echvi_4607
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,513,538 + Echvi_4604 0.26 -2.7 5,513,538 + Echvi_4604 0.26 -1.0 5,513,539 - Echvi_4604 0.26 +0.8 5,513,555 + Echvi_4604 0.28 -1.5 5,513,555 + Echvi_4604 0.28 +2.4 5,513,592 + Echvi_4604 0.31 +0.2 5,513,657 - +1.4 5,513,843 + Echvi_4604 0.56 +1.4 5,513,908 + Echvi_4604 0.63 -0.6 5,513,909 - Echvi_4604 0.63 -1.3 5,513,909 - Echvi_4604 0.63 -0.2 5,513,909 - Echvi_4604 0.63 +0.3 5,513,950 + Echvi_4604 0.67 +0.1 5,513,950 + Echvi_4604 0.67 -4.3 5,513,950 + Echvi_4604 0.67 -0.4 5,514,026 + Echvi_4604 0.75 +0.1 5,514,030 + Echvi_4604 0.75 +1.2 5,514,205 + +3.3 5,514,244 - +1.2 5,514,267 + -0.1 5,514,274 + +0.4 5,514,275 - -0.5 5,514,275 - +0.1 5,514,275 - -0.8 5,514,417 + Echvi_4605 0.15 +1.4 5,514,417 + Echvi_4605 0.15 +0.3 5,514,762 - Echvi_4605 0.53 -1.3 5,514,818 - Echvi_4605 0.60 -1.9 5,514,852 - Echvi_4605 0.63 -1.4 5,514,866 + Echvi_4605 0.65 +1.4 5,514,867 - Echvi_4605 0.65 +1.2 5,514,945 + Echvi_4605 0.74 +0.6 5,514,946 - Echvi_4605 0.74 -0.6 5,514,946 - Echvi_4605 0.74 +1.2 5,514,946 - Echvi_4605 0.74 +2.1 5,514,949 + Echvi_4605 0.74 +0.6 5,515,076 + Echvi_4605 0.88 +1.6 5,515,186 + -1.0 5,515,187 - -1.4 5,515,193 + +1.1 5,515,276 - Echvi_4606 0.20 -1.5 5,515,361 + Echvi_4606 0.38 +1.5 5,515,361 + Echvi_4606 0.38 -0.8 5,515,362 - Echvi_4606 0.38 +2.1 5,515,370 + Echvi_4606 0.40 +1.6 5,515,396 + Echvi_4606 0.45 +1.7 5,515,410 - Echvi_4606 0.48 +1.1 5,515,456 + Echvi_4606 0.58 -2.1 5,515,457 - Echvi_4606 0.58 +2.2 5,515,584 - Echvi_4606 0.86 -0.3 5,515,584 - Echvi_4606 0.86 -1.8 5,515,586 - Echvi_4606 0.86 -0.5 5,515,650 - -0.1 5,515,672 + +2.4 5,515,698 + -1.1 5,515,743 + +0.1 5,515,770 + -0.4 5,516,003 + Echvi_4607 0.28 -0.2 5,516,092 - Echvi_4607 0.39 +1.0 5,516,092 - Echvi_4607 0.39 +1.0 5,516,149 + Echvi_4607 0.46 +1.1 5,516,174 - Echvi_4607 0.49 +1.0 5,516,176 + Echvi_4607 0.49 -0.8 5,516,176 + Echvi_4607 0.49 +1.1 5,516,176 + Echvi_4607 0.49 +0.9 5,516,176 + Echvi_4607 0.49 +0.0 5,516,177 - Echvi_4607 0.49 -0.4 5,516,177 - Echvi_4607 0.49 +0.1
Or see this region's nucleotide sequence